|
|
GEO help: Mouse over screen elements for information. |
|
Status |
Public on May 25, 2006 |
Title |
Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP) |
Technology type |
in situ oligonucleotide |
Distribution |
non-commercial |
Organism |
Homo sapiens |
Manufacturer |
Affymetrix |
Manufacture protocol |
see manufacturer's web site
|
|
|
Description |
Early Access Array The GeneChip® Human Mapping 500K Array Set is comprised of two arrays (Nsp/Sty arrays).
|
|
|
Submission date |
May 25, 2006 |
Last update date |
Oct 05, 2007 |
Contact name |
Fan Shen |
E-mail(s) |
Fan_Shen@affymetrix.com
|
Phone |
408-731-5762
|
Organization name |
Affymetrix, Inc
|
Street address |
3420 Central Expressway
|
City |
Santa Clara |
State/province |
CA |
ZIP/Postal code |
95051 |
Country |
USA |
|
|
Samples (398)
|
GSM112759, GSM112760, GSM112761, GSM112762, GSM112763, GSM112764
GSM112765, GSM112766, GSM112767, GSM112768, GSM112769, GSM112770, GSM112771, GSM112772, GSM112773, GSM112774, GSM112775, GSM112776, GSM112777, GSM112778, GSM112779, GSM112780, GSM112781, GSM112782, GSM112783, GSM112784, GSM112785, GSM112786, GSM112787, GSM112788, GSM112789, GSM112790, GSM112791, GSM112792, GSM112818, GSM112819, GSM112820, GSM112821, GSM112822, GSM112823, GSM112824, GSM112825, GSM112826, GSM112827, GSM112828, GSM112829, GSM112830, GSM112831, GSM112832, GSM112833, GSM112834, GSM112835, GSM112836, GSM112837, GSM112838, GSM112839, GSM112840, GSM112841, GSM112842, GSM112843, GSM112844, GSM112845, GSM112846, GSM112847, GSM112848, GSM112849, GSM112850, GSM112851, GSM112852, GSM112853, GSM112854, GSM112855, GSM112856, GSM112857, GSM112858, GSM112859, GSM112860, GSM112861, GSM112862, GSM112863, GSM112864, GSM112865, GSM112866, GSM112867, GSM112868, GSM112869, GSM112870, GSM112871, GSM112872, GSM112873, GSM112874, GSM112875, GSM112876, GSM112877, GSM112878, GSM112880, GSM112881, GSM112882, GSM112883, GSM112884, GSM112885, GSM112886, GSM112887, GSM112888, GSM112889, GSM112890, GSM112891, GSM112892, GSM112893, GSM112894, GSM112895, GSM112896, GSM112897, GSM112898, GSM112899, GSM112900, GSM112901, GSM112974, GSM112975, GSM112976, GSM112977, GSM112978, GSM112979, GSM112980, GSM112981, GSM112982, GSM112983, GSM112984, GSM112985, GSM112986, GSM112987, GSM112988, GSM112989, GSM112990, GSM112991, GSM112992, GSM112993, GSM112994, GSM112995, GSM112996, GSM112997, GSM112998, GSM112999, GSM113000, GSM113001, GSM113002, GSM113003, GSM113004, GSM113005, GSM113006, GSM113007, GSM113008, GSM113009, GSM113010, GSM113011, GSM113012, GSM113017, GSM113018, GSM113019, GSM113020, GSM113021, GSM113023, GSM113024, GSM113025, GSM113026, GSM113027, GSM113028, GSM113029, GSM113030, GSM113031, GSM113032, GSM113033, GSM113034, GSM113035, GSM113036, GSM113037, GSM113038, GSM113039, GSM113040, GSM113041, GSM113042, GSM113043, GSM113044, GSM113045, GSM113046, GSM113047, GSM113048, GSM113049, GSM113050, GSM113051, GSM113052, GSM113053, GSM113054, GSM113055, GSM113056, GSM113057, GSM113058, GSM113059, GSM113060, GSM113061, GSM113062, GSM113063, GSM113064, GSM113065, GSM113066, GSM113067, GSM113068, GSM113069, GSM113070, GSM113071, GSM113072, GSM113073, GSM113074, GSM113075, GSM113076, GSM113077, GSM113078, GSM113086, GSM113090, GSM113095, GSM113098, GSM113099, GSM113100, GSM113101, GSM113102, GSM113103, GSM113104, GSM113106, GSM113107, GSM113108, GSM113109, GSM113110, GSM113111, GSM113112, GSM113113, GSM113114, GSM113115, GSM113116, GSM113118, GSM113119, GSM113120, GSM113121, GSM113122, GSM113123, GSM113124, GSM113125, GSM113126, GSM113127, GSM113128, GSM113129, GSM113130, GSM113131, GSM113132, GSM113134, GSM113135, GSM113136, GSM113137, GSM113138, GSM113139, GSM113140, GSM113141, GSM113142, GSM113143, GSM113144, GSM113145, GSM113146, GSM113147, GSM113148, GSM113150, GSM113151, GSM113199, GSM113200, GSM113201, GSM113203, GSM113204, GSM113205, GSM113206, GSM113207, GSM113208, GSM113209, GSM113210, GSM113211, GSM113212, GSM113213, GSM113214, GSM113215, GSM113217, GSM113218, GSM113219, GSM113220, GSM113221, GSM113222, GSM113223, GSM113224, GSM113225, GSM113226, GSM113227, GSM113228, GSM113229, GSM113231, GSM113232, GSM113233, GSM113234, GSM113235, GSM113236, GSM113237, GSM233523, GSM233559, GSM233719, GSM233731, GSM233743, GSM233749, GSM233761, GSM233769, GSM233771, GSM233781, GSM233783, GSM233789, GSM233791, GSM233797, GSM233823, GSM233833, GSM233847, GSM233871, GSM233879, GSM233885, GSM233897, GSM233901, GSM233903, GSM233905, GSM233913, GSM233917, GSM233923, GSM233925, GSM233927, GSM233929, GSM233945, GSM233957, GSM233961, GSM233969, GSM233977, GSM233987, GSM233989, GSM233993, GSM234001, GSM234031, GSM234043, GSM234057, GSM234063, GSM234069, GSM234075, GSM234101, GSM234113, GSM234119, GSM234129, GSM234131, GSM234145, GSM234147, GSM234157, GSM234163, GSM234173, GSM234179, GSM234183, GSM234187, GSM234193, GSM234201, GSM234207, GSM234213, GSM234219, GSM234227, GSM234229, GSM234235, GSM234237, GSM234249, GSM234255, GSM234283, GSM234289, GSM234301, GSM234309, GSM234315, GSM234321, GSM234335, GSM234389, GSM234393, GSM234399, GSM234401, GSM234425, GSM234431, GSM234437, GSM234439, GSM234451, GSM234453, GSM234471, GSM234477, GSM234491, GSM234493, GSM234501, GSM234509
|
Series (2) |
GSE5013 |
Global variation of copy number in the human genome_EA |
GSE9222 |
Structural Variation of Chromosomes in Autism Spectrum Disorder. |
|
Data table header descriptions |
ID |
Affymetrix Probe Set ID |
dbSNP RS ID |
refSNP ID |
Chromosome |
|
Genome Version |
|
DB SNP Version |
|
Physical Position |
|
Strand |
|
ChrX pseudo-autosomal region |
|
Cytoband |
|
Flank |
|
Allele A |
|
Allele B |
|
Associated Gene |
|
Genetic Map |
|
Microsatellite |
|
Fragment Length Start Stop |
|
Data table |
ID |
dbSNP RS ID |
Chromosome |
Genome Version |
DB SNP Version |
Physical Position |
Strand |
ChrX pseudo-autosomal region |
Cytoband |
Flank |
Allele A |
Allele B |
Associated Gene |
Genetic Map |
Microsatellite |
Fragment Length Start Stop |
SNP_A-1963768 |
rs2092435 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
14125072 |
- |
0 |
p36.21 |
tcactcaggttgttgg[A/C]aaaattccatttctca |
A |
C |
NM_015866 // downstream // 265197 // Hs.371823 // PRDM2 // 7799 // Homo sapiens PR domain containing 2, with ZNF domain (PRDM2), transcript variant 2, mRNA. /// NM_012231 // downstream // 228191 // Hs.371823 // PRDM2 // 7799 // Homo sapiens PR domain containing 2, with ZNF domain (PRDM2), transcript variant 1, mRNA. /// NM_015866 // downstream // 228191 // Hs.371823 // PRDM2 // 7799 // Homo sapiens PR domain containing 2, with ZNF domain (PRDM2), transcript variant 2, mRNA. /// NM_201628 // upstream // 1045759 // Hs.531424 // FLJ43806 // 399563 // Homo sapiens hypothetical protein FLJ43806 (FLJ43806), mRNA. /// NM_182534 // downstream // 1062683 // Hs.447976 // FLJ23703 // 200197 // Homo sapiens hypothetical protein FLJ23703 (FLJ23703), mRNA. /// ENST00000311066 // downstream // 265197 // --- // --- // --- // --- /// ENST00000235372 // downstream // 228191 // --- // --- // --- // --- /// ENST00000343137 // downstream // 265197 // --- // --- // --- // --- /// ENST00000251295 // upstream // 545434 // --- // --- // --- // --- /// ENST00000303864 // upstream // 870860 // --- // --- // --- // --- /// ENST00000316575 // downstream // 1012363 // --- // --- // --- // --- /// ENST00000338894 // upstream // 1045759 // --- // --- // --- // --- /// ENST00000361061 // upstream // 1056717 // --- // --- // --- // --- /// ENST00000310916 // downstream // 1062683 // --- // --- // --- // --- |
24.7438594194138 // D1S228 // D1S2834 // --- // --- /// 30.8271264258995 // D1S2667 // D1S2834 // AFMA224WG9 // AFM321ZB9 /// 27.7970013200476 // D1S2740 // --- // --- // 815107 |
D1S1263 // upstream // 28984 /// D1S1314 // downstream // 92383 |
694 // 14124739 // 14125432 |
SNP_A-1974000 |
rs1883911 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
17226503 |
- |
0 |
p36.13 |
ggaacctgtgaacgtg[A/G]caagaggacctttgca |
A |
G |
NM_007365 // upstream // 35267 // Hs.33455 // PADI2 // 11240 // Homo sapiens peptidyl arginine deiminase, type II (PADI2), mRNA. /// NM_013358 // upstream // 50424 // Hs.412941 // PADI1 // 29943 // Homo sapiens peptidyl arginine deiminase, type I (PADI1), mRNA. /// ENST00000245530 // upstream // 35267 // --- // --- // --- // --- /// ENST00000270737 // upstream // 50424 // --- // --- // --- // --- |
31.1448110583215 // D1S2672 // D1S1592 // --- // --- /// 36.6514045979985 // D1S2672 // D1S3669 // AFMA232ZB9 // GATA29A05 /// 34.2831485364371 // --- // D1S1592 // 15353 // --- |
D1S1415 // upstream // 156413 /// D1S1511 // downstream // 4552 |
656 // 17226201 // 17226856 |
SNP_A-1815814 |
rs2076655 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
11223427 |
+ |
0 |
p36.22 |
gcctctcaccatcaag[A/G]agtaaacggtttttgg |
A |
G |
ENST00000263936 // intron // 0 // --- // --- // --- // --- |
19.1779906427299 // D1S2736 // D1S2667 // --- // --- /// 24.152766521094 // UNKNOWN // D1S2667 // ATA9B08 // AFMA224WG9 /// 19.3866929994637 // D1S2736 // --- // --- // 41639 |
D1S1292 // upstream // 59729 /// D1S1298 // downstream // 90844 |
466 // 11223164 // 11223629 |
SNP_A-1962434 |
rs17390405 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
13694393 |
- |
0 |
p36.21 |
gcaaccaataagggag[C/T]atgtcatgcaggccaa |
C |
T |
NM_198389 // downstream // 4635 // Hs.468675 // T1A-2 // 10630 // Homo sapiens lung type-I cell membrane-associated glycoprotein (T1A-2), transcript variant 2, mRNA. /// NM_006474 // downstream // 4635 // Hs.468675 // T1A-2 // 10630 // Homo sapiens lung type-I cell membrane-associated glycoprotein (T1A-2), transcript variant 1, mRNA. /// NM_015866 // upstream // 82263 // Hs.371823 // PRDM2 // 7799 // Homo sapiens PR domain containing 2, with ZNF domain (PRDM2), transcript variant 2, mRNA. /// NM_012231 // upstream // 82263 // Hs.371823 // PRDM2 // 7799 // Homo sapiens PR domain containing 2, with ZNF domain (PRDM2), transcript variant 1, mRNA. /// ENST00000294489 // downstream // 4635 // --- // --- // --- // --- /// ENST00000311066 // upstream // 82263 // --- // --- // --- // --- /// ENST00000235372 // upstream // 82263 // --- // --- // --- // --- /// ENST00000343137 // upstream // 126811 // --- // --- // --- // --- |
23.8812712689944 // D1S1597 // D1S228 // --- // --- /// 29.847925449605 // D1S2667 // D1S2834 // AFMA224WG9 // AFM321ZB9 /// 27.2662971970937 // D1S2740 // --- // --- // 815107 |
D1S228 // upstream // 37241 /// D1S2028E // downstream // 147646 |
472 // 13694044 // 13694515 |
SNP_A-2000230 |
rs12059199 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
4251250 |
+ |
0 |
p36.32 |
cctggcttatcatgga[A/G]gtgctgttgaataggc |
A |
G |
NM_018836 // upstream // 374228 // Hs.25924 // SHREW1 // 55966 // Homo sapiens transmembrane protein SHREW1 (SHREW1), mRNA. /// ENST00000356772 // upstream // 287987 // --- // --- // --- // --- /// ENST00000360071 // upstream // 279978 // --- // --- // --- // --- /// ENST00000359090 // upstream // 374228 // --- // --- // --- // --- /// ENST00000354985 // upstream // 374228 // --- // --- // --- // --- |
5.74803775598439 // D1S468 // D1S2893 // --- // --- /// 8.13357692191417 // D1S468 // D1S2845 // AFM280WE5 // AFM344WE9 /// 8.75011297452257 // D1S468 // D1S2845 // --- // --- |
D1S2845 // upstream // 117524 /// D15S1313 // downstream // 61164 |
597 // 4251035 // 4251631 |
SNP_A-1995107 |
rs6669265 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
27045361 |
+ |
0 |
p36.11 |
agcccagctgtgggac[A/G]cgctcacctttccatg |
A |
G |
NM_052943 // upstream // 21892 // Hs.59771 // FAM46B // 115572 // Homo sapiens family with sequence similarity 46, member B (FAM46B), mRNA. /// NM_052943 // upstream // 21757 // Hs.59771 // FAM46B // 115572 // Homo sapiens family with sequence similarity 46, member B (FAM46B), mRNA. /// NM_003047 // downstream // 64088 // Hs.469116 // SLC9A1 // 6548 // Homo sapiens solute carrier family 9 (sodium/hydrogen exchanger), isoform 1 (antiporter, Na+/H+, amiloride sensitive) (SLC9A1), /// ENST00000289166 // upstream // 21892 // --- // --- // --- // --- /// ENST00000358665 // upstream // 21757 // --- // --- // --- // --- /// ENST00000263980 // downstream // 64088 // --- // --- // --- // --- |
46.347486476251 // D1S2749 // D1S2639 // --- // --- /// 56.2127930120853 // D1S2749 // D1S2787 // AFMB291WB5 // AFMB350ZB1 /// 48.9315316087757 // D1S455 // --- // --- // 739277 |
D1S1277 // upstream // 49563 /// D1S2749 // downstream // 65492 |
541 // 27044833 // 27045373 |
SNP_A-1990391 |
rs942542 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
24379733 |
- |
0 |
p36.11 |
agataagcgtgccata[C/T]aatgagaggacagagc |
C |
T |
NM_173065 // upstream // 120676 // Hs.221375 // IL28RA // 163702 // Homo sapiens interleukin 28 receptor, alpha (interferon, lambda receptor) (IL28RA), transcript variant 3, mRNA. /// NM_170743 // upstream // 120676 // Hs.221375 // IL28RA // 163702 // Homo sapiens interleukin 28 receptor, alpha (interferon, lambda receptor) (IL28RA), transcript variant 1, mRNA. /// NM_198174 // upstream // 11629 // Hs.369825 // TFCP2L4 // 57822 // Homo sapiens transcription factor CP2-like 4 (TFCP2L4), transcript variant 3, mRNA. /// NM_198174 // upstream // 15103 // Hs.369825 // TFCP2L4 // 57822 // Homo sapiens transcription factor CP2-like 4 (TFCP2L4), transcript variant 3, mRNA. /// NM_021180 // upstream // 15103 // Hs.369825 // TFCP2L4 // 57822 // Homo sapiens transcription factor CP2-like 4 (TFCP2L4), transcript variant 1, mRNA. /// NM_198173 // upstream // 15103 // Hs.369825 // TFCP2L4 // 57822 // Homo sapiens transcription factor CP2-like 4 (TFCP2L4), transcript variant 2, mRNA. /// NM_178122 // downstream // 49084 // Hs.403187 // LOC90529 // 90529 // Homo sapiens hypothetical protein LOC90529 (LOC90529), mRNA. /// NM_178122 // downstream // 49100 // Hs.403187 // LOC90529 // 90529 // Homo sapiens hypothetical protein LOC90529 (LOC90529), mRNA. /// ENST00000327575 // upstream // 120676 // --- // --- // --- // --- /// ENST00000327535 // upstream // 120676 // --- // --- // --- // --- /// ENST00000350501 // upstream // 11488 // --- // --- // --- // --- /// ENST00000356046 // upstream // 11629 // --- // --- // --- // --- /// ENST00000342072 // upstream // 15103 // --- // --- // --- // --- /// ENST00000236255 // upstream // 15103 // --- // --- // --- // --- /// ENST00000337248 // downstream // 49084 // --- // --- // --- // --- /// ENST00000003583 // downstream // 49100 // --- // --- // --- // --- |
43.8475592965554 // D1S2620 // D1S234 // --- // --- /// 53.9501452146084 // D1S2620 // D1S2674 // AFMA114YD5 // AFMA240WD9 /// 45.8386777349508 // --- // --- // 614545 // 49062 |
D1S1385 // upstream // 80353 /// D1S1419 // downstream // 15487 |
208 // 24379618 // 24379825 |
SNP_A-1978489 |
rs2236815 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
18795252 |
+ |
0 |
p36.13 |
atgggcactgagaggg[A/G]aatcgaagatgattgg |
A |
G |
NM_002584 // intron // 0 // Hs.113253 // PAX7 // 5081 // Homo sapiens paired box gene 7 (PAX7), transcript variant 1, mRNA. /// NM_013945 // intron // 0 // Hs.113253 // PAX7 // 5081 // Homo sapiens paired box gene 7 (PAX7), transcript variant 2, mRNA. /// ENST00000234492 // intron // 0 // --- // --- // --- // --- |
35.797251908397 // D1S2644 // D1S3726 // --- // --- /// 43.760334961244 // D1S2644 // D1S199 // AFMA153XE9 // AFM078YG5 /// 38.9288586784423 // --- // --- // 613868 // 64451 |
D1S1473 // upstream // 18263 /// D1S2644 // downstream // 23480 |
302 // 18795210 // 18795511 |
SNP_A-2011662 |
rs17423513 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
5251487 |
+ |
0 |
p36.32 |
ttgtagaattaatgga[C/T]gatccctttgttggtt |
C |
T |
NM_018836 // downstream // 497264 // Hs.25924 // SHREW1 // 55966 // Homo sapiens transmembrane protein SHREW1 (SHREW1), mRNA. /// ENST00000359090 // downstream // 497264 // --- // --- // --- // --- /// ENST00000354985 // downstream // 497264 // --- // --- // --- // --- /// ENST00000253998 // downstream // 605650 // --- // --- // --- // --- |
8.4952792091147 // D1S2132 // D1S2633 // --- // --- /// 11.0114411404561 // UNKNOWN // D1S2633 // GATA68D01 // AFMA131YA5 /// 11.3317359496855 // D1S2660 // --- // --- // 609730 |
D1S1372 // upstream // 16644 /// D1S385 // downstream // 1999 |
1046 // 5250842 // 5251887 |
SNP_A-2013771 |
rs2211417 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
5545995 |
+ |
0 |
p36.31 |
aggattaccttgctga[A/C]acaggaacaaacattc |
A |
C |
NM_018836 // downstream // 791772 // Hs.25924 // SHREW1 // 55966 // Homo sapiens transmembrane protein SHREW1 (SHREW1), mRNA. /// ENST00000359090 // downstream // 791772 // --- // --- // --- // --- /// ENST00000354985 // downstream // 791772 // --- // --- // --- // --- /// ENST00000253998 // downstream // 311142 // --- // --- // --- // --- |
9.12072482280083 // D1S2132 // D1S2633 // --- // --- /// 11.3439951496843 // UNKNOWN // D1S2633 // GATA68D01 // AFMA131YA5 /// 11.5688241509434 // D1S2660 // --- // --- // 609730 |
D1S1371 // upstream // 30 /// D1S2795 // downstream // 35224 |
210 // 5545969 // 5546178 |
SNP_A-1909471 |
rs848577 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
12772106 |
+ |
0 |
p36.21 |
cctgctcaatgtgaac[C/G]ggaaaggaaaggggat |
C |
G |
NM_023013 // upstream // 13706 // Hs.454859 // LOC65121 // 65121 // Homo sapiens hypothetical protein similar to preferentially expressed antigen of melanoma (LOC65121), mRNA. /// AL049680 // downstream // 46628 // Hs.451982 // LOC343068 // 343068 // Human gene from PAC 845O24, chromosome 1, similar to preferentially expressed antigen of melanoma. /// NM_023014 // upstream // 79101 // Hs.104991 // LOC65122 // 65122 // Homo sapiens hypothetical protein similar to preferentially expressed antigen of melanoma (LOC65122), mRNA. /// AL049681 // downstream // 101193 // Hs.451982 // LOC343070 // 343070 // Human gene from PAC 845O24, chromosome 1, similar to preferentially expressed antigen of melanoma. /// ENST00000235367 // downstream // 98 // --- // --- // --- // --- /// ENST00000332296 // upstream // 13706 // --- // --- // --- // --- /// ENST00000354823 // upstream // 17000 // --- // --- // --- // --- /// ENST00000331684 // downstream // 46628 // --- // --- // --- // --- /// ENST00000235360 // downstream // 69421 // --- // --- // --- // --- /// ENST00000240189 // upstream // 79101 // --- // --- // --- // --- /// ENST00000235349 // downstream // 101193 // --- // --- // --- // --- |
22.0944550318427 // D1S434 // D1S1597 // --- // --- /// 27.7509940208061 // D1S2667 // D1S2834 // AFMA224WG9 // AFM321ZB9 /// 26.1298092015175 // D1S2740 // --- // --- // 815107 |
D1S1379 // upstream // 7460 /// D1S3510 // downstream // 163112 |
394 // 12772039 // 12772432 |
SNP_A-2008981 |
rs10489136 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
4843608 |
+ |
0 |
p36.32 |
actccattttgcagaa[A/G]atttaagatgccagtg |
A |
G |
NM_018836 // downstream // 89385 // Hs.25924 // SHREW1 // 55966 // Homo sapiens transmembrane protein SHREW1 (SHREW1), mRNA. /// ENST00000359090 // downstream // 89385 // --- // --- // --- // --- /// ENST00000354985 // downstream // 89385 // --- // --- // --- // --- /// ENST00000253998 // downstream // 1013529 // --- // --- // --- // --- |
7.46595133611401 // D1S2660 // D1S2132 // --- // --- /// 10.2019966851302 // D1S2845 // UNKNOWN // AFM344WE9 // GATA68D01 /// 11.0033805283019 // D1S2660 // --- // --- // 609730 |
D1S1608 // upstream // 70477 /// D1S3378 // downstream // 81303 |
392 // 4843252 // 4843643 |
SNP_A-1980898 |
rs4587514 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
3118283 |
- |
0 |
p36.32 |
cccttattgaccctga[C/G]gtttttcaagttaagt |
C |
G |
NM_199454 // intron // 0 // Hs.99500 // PRDM16 // 63976 // Homo sapiens PR domain containing 16 (PRDM16), transcript variant 2, mRNA. /// NM_022114 // intron // 0 // Hs.99500 // PRDM16 // 63976 // Homo sapiens PR domain containing 16 (PRDM16), transcript variant 1, mRNA. /// ENST00000270722 // intron // 0 // --- // --- // --- // --- |
3.45690388420308 // --- // D1S468 // --- // --- /// 3.64703359783425 // --- // D1S468 // --- // AFM280WE5 /// 3.27834782949443 // --- // --- // --- // 42051 |
D1S1278 // upstream // 10429 /// D1S1467 // downstream // 5907 |
921 // 3117782 // 3118702 |
SNP_A-1980279 |
rs717536 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
19650952 |
- |
0 |
p36.13 |
gtgtgtttgagagaga[C/G]taggaggagaggggct |
C |
G |
NM_004930 // upstream // 93639 // Hs.432760 // CAPZB // 832 // Homo sapiens capping protein (actin filament) muscle Z-line, beta (CAPZB), mRNA. /// U03271 // upstream // 159402 // Hs.432760 // CAPZB // 832 // Human F-actin capping protein beta subunit mRNA, complete cds. /// ENST00000264203 // upstream // 93639 // --- // --- // --- // --- /// ENST00000264202 // upstream // 159402 // --- // --- // --- // --- /// ENST00000322753 // upstream // 17848 // --- // --- // --- // --- |
37.4665834911957 // D1S552 // D1S199 // --- // --- /// 45.2410139117575 // D1S2644 // D1S199 // AFMA153XE9 // AFM078YG5 /// 40.1393670678081 // --- // --- // 613868 // 64451 |
D1S199 // upstream // 51346 /// D1S2485 // downstream // 11901 |
293 // 19650704 // 19650996 |
SNP_A-1975375 |
rs4920385 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
17868638 |
- |
0 |
p36.13 |
tagaagttaacactcc[A/G]acaagtagccacctaa |
A |
G |
NM_030812 // upstream // 26145 // Hs.2149 // LOC81569 // 81569 // Homo sapiens actin like protein (LOC81569), mRNA. /// ENST00000290568 // downstream // 98969 // --- // --- // --- // --- /// ENST00000167825 // downstream // 98969 // --- // --- // --- // --- /// ENST00000235799 // upstream // 26145 // --- // --- // --- // --- /// ENST00000325482 // upstream // 26319 // --- // --- // --- // --- |
32.3132338585971 // D1S1592 // D1S2826 // --- // --- /// 39.0287993306373 // D1S1592 // D1S2826 // GAAT4D10 // AFM296TE9 /// 35.1313903862848 // D1S1592 // --- // --- // 613868 |
D1S1358 // upstream // 83500 /// D1S1592 // downstream // 55802 |
487 // 17868325 // 17868811 |
SNP_A-1997922 |
rs17404435 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
3789443 |
- |
0 |
p36.32 |
aactatctaaagcagc[A/C]ctttactgacatgaaa |
A |
C |
AB011134 // intron // 0 // Hs.509017 // KIAA0562 // 9731 // Homo sapiens mRNA for KIAA0562 protein, partial cds. /// ENST00000263739 // intron // 0 // --- // --- // --- // --- /// ENST00000335437 // intron // 0 // --- // --- // --- // --- |
4.4927217375449 // D1S468 // D1S2893 // --- // --- /// 5.32312515526603 // D1S468 // D1S2845 // AFM280WE5 // AFM344WE9 /// 6.2006750868504 // D1S468 // D1S2845 // --- // --- |
D15S1313 // upstream // 400643 /// D1S1403 // downstream // 90304 |
918 // 3788879 // 3789796 |
SNP_A-2087594 |
|
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
6924757 |
- |
0 |
p36.31 |
agactgaagtagaaat[C/T]agaatcagttacagaa |
C |
T |
ENST00000303646 // intron // 0 // --- // --- // --- // --- |
12.0670964781304 // D1S2642 // D1S1646 // --- // --- /// 14.0927155598262 // D1S214 // D1S2663 // AFM147YF8 // AFMA210XG9 /// 13.3659864443445 // D1S2870 // D1S2694 // --- // --- |
D1S1365 // upstream // 139311 /// D1S214 // downstream // 28502 |
715 // 6924539 // 6925253 |
SNP_A-1964179 |
rs10489143 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
14241201 |
+ |
0 |
p36.21 |
tggctgtccattccag[C/G]agagtttccatgttat |
C |
G |
NM_015866 // downstream // 381326 // Hs.371823 // PRDM2 // 7799 // Homo sapiens PR domain containing 2, with ZNF domain (PRDM2), transcript variant 2, mRNA. /// NM_012231 // downstream // 344320 // Hs.371823 // PRDM2 // 7799 // Homo sapiens PR domain containing 2, with ZNF domain (PRDM2), transcript variant 1, mRNA. /// NM_015866 // downstream // 344320 // Hs.371823 // PRDM2 // 7799 // Homo sapiens PR domain containing 2, with ZNF domain (PRDM2), transcript variant 2, mRNA. /// NM_201628 // upstream // 929630 // Hs.531424 // FLJ43806 // 399563 // Homo sapiens hypothetical protein FLJ43806 (FLJ43806), mRNA. /// NM_182534 // downstream // 946554 // Hs.447976 // FLJ23703 // 200197 // Homo sapiens hypothetical protein FLJ23703 (FLJ23703), mRNA. /// ENST00000311066 // downstream // 381326 // --- // --- // --- // --- /// ENST00000235372 // downstream // 344320 // --- // --- // --- // --- /// ENST00000343137 // downstream // 381326 // --- // --- // --- // --- /// ENST00000251295 // upstream // 429305 // --- // --- // --- // --- /// ENST00000303864 // upstream // 754731 // --- // --- // --- // --- /// ENST00000316575 // downstream // 896234 // --- // --- // --- // --- /// ENST00000338894 // upstream // 929630 // --- // --- // --- // --- /// ENST00000361061 // upstream // 940588 // --- // --- // --- // --- /// ENST00000310916 // downstream // 946554 // --- // --- // --- // --- |
24.9743268912105 // D1S2834 // D1S507 // --- // --- /// 31.1249360388287 // D1S2834 // D1S2672 // AFM321ZB9 // AFMA232ZB9 /// 27.9401012601295 // D1S2740 // --- // --- // 815107 |
D1S1413 // upstream // 225740 /// D1S1418 // downstream // 25393 |
309 // 14241013 // 14241321 |
SNP_A-1997896 |
rs16824230 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
3789397 |
+ |
0 |
p36.32 |
cacaaattgggaaacc[A/G]agcaacttttgaaatg |
A |
G |
AB011134 // intron // 0 // Hs.509017 // KIAA0562 // 9731 // Homo sapiens mRNA for KIAA0562 protein, partial cds. /// ENST00000263739 // intron // 0 // --- // --- // --- // --- /// ENST00000335437 // intron // 0 // --- // --- // --- // --- |
4.49259669713441 // D1S468 // D1S2893 // --- // --- /// 5.32284520978823 // D1S468 // D1S2845 // AFM280WE5 // AFM344WE9 /// 6.20042114062864 // D1S468 // D1S2845 // --- // --- |
D15S1313 // upstream // 400689 /// D1S1403 // downstream // 90258 |
918 // 3788879 // 3789796 |
SNP_A-1983828 |
rs10493006 |
1 |
NCBI Build 35, May 2004 |
123, October 2004 |
21121210 |
+ |
0 |
p36.12 |
ttaatacaccttaata[A/G]taagttgagaggttgt |
A |
G |
NM_003760 // intron // 0 // Hs.467084 // EIF4G3 // 8672 // Homo sapiens eukaryotic translation initiation factor 4 gamma, 3 (EIF4G3), mRNA. /// ENST00000264211 // intron // 0 // --- // --- // --- // --- /// ENST00000356916 // intron // 0 // --- // --- // --- // --- |
39.7769041946565 // D1S2732 // D1S478 // --- // --- /// 47.2409515298832 // UNKNOWN // D1S1539 // ATA47D07 // UT5123 /// 41.3939481200406 // --- // --- // 44838 // 548760 |
D1S1387 // upstream // 171523 /// D1S1269 // downstream // 85038 |
913 // 21120750 // 21121662 |
Total number of rows: 267343
Table truncated, full table size 222992 Kbytes.
Supplementary data files not provided |
|
|
|
|
|