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GEO accession:
Sample GSM112778
Query DataSets for GSM112778
Status
Public on Sep 30, 2006
Title
NA10839_Sty_EA
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Female Cell lot number: 2
Biomaterial provider
Coriell NA10839
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA10839
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 05, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3812
Series (1)
GSE5013
Global variation of copy number in the human genome_EA
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotype call
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-2128504
AB
0.187500
2.933
0.340410
0.244311
SNP_A-2183388
AB
0.382813
2.464
0.712393
0.829285
SNP_A-1999657
AB
0.007813
14.027
0.525234
0.352857
SNP_A-2298105
BB
0.007813
7.594
0.121257
0.168571
SNP_A-1999647
AB
0.125000
1.456
0.801727
0.735362
SNP_A-2231588
AA
0.062500
15.735
1.000000
0.771057
SNP_A-1869885
AA
0.007813
17.295
1.000000
0.909676
SNP_A-2025428
AB
0.039063
8.386
0.276423
0.557453
SNP_A-1802236
AA
0.007813
13.686
0.938750
1.000000
SNP_A-2026297
AB
0.023438
8.537
0.312347
0.370347
SNP_A-1784073
AA
0.015625
6.775
0.888246
0.975671
SNP_A-1999656
BB
0.093750
4.048
0.137949
0.144254
SNP_A-1809045
BB
0.187500
0.932
0.151554
0.190320
SNP_A-2082354
AA
0.062500
6.182
0.840810
0.982256
SNP_A-2191778
BB
0.007813
18.819
0.000000
0.067719
SNP_A-2236359
BB
0.007813
7.073
0.152485
0.128086
SNP_A-2104498
BB
0.078125
6.137
0.000000
0.000000
SNP_A-2109914
AA
0.007813
15.383
0.950628
0.950448
SNP_A-2118217
AB
0.039063
5.556
0.680272
0.310777
SNP_A-2186627
BB
0.187500
1.558
0.081152
0.185654
Total number of rows:
267269
Table truncated, full table size
13202 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM112778.CEL.gz
43.2 Mb
(ftp)
(http)
CEL
GSM112778_raw.txt.gz
26.2 Mb
(ftp)
(http)
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