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GEO accession:
Sample GSM112780
Query DataSets for GSM112780
Status
Public on Sep 30, 2006
Title
NA10847_Sty_EA
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Female Cell lot number: 3
Biomaterial provider
Coriell NA10847
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA10847
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 05, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3812
Series (1)
GSE5013
Global variation of copy number in the human genome_EA
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotype call
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-2128504
AB
0.007813
6.611
0.323570
0.333485
SNP_A-2183388
AA
0.132813
3.490
0.727737
0.865452
SNP_A-1999657
BB
0.007813
25.331
0.005949
0.000000
SNP_A-2298105
BB
0.382813
6.459
0.138272
0.329149
SNP_A-1999647
AB
0.046875
7.297
0.649810
0.595028
SNP_A-2231588
AA
0.023438
8.659
0.906250
0.859788
SNP_A-1869885
AA
0.039063
15.864
1.000000
0.896538
SNP_A-2025428
AB
0.062500
3.398
0.522422
0.732177
SNP_A-1802236
AB
0.039063
5.059
0.692053
0.640093
SNP_A-2026297
AB
0.007813
14.008
0.320380
0.366752
SNP_A-1784073
AA
0.015625
5.086
0.843678
0.932754
SNP_A-1999656
BB
0.187500
5.206
0.014590
0.216677
SNP_A-1809045
BB
0.007813
8.824
0.078053
0.126141
SNP_A-2082354
AA
0.007813
3.064
0.811725
1.000000
SNP_A-2191778
BB
0.007813
19.848
0.011066
0.000000
SNP_A-2236359
BB
0.007813
8.760
0.151214
0.000000
SNP_A-2104498
BB
0.453125
0.968
0.085483
0.347875
SNP_A-2109914
AA
0.023438
21.997
1.000000
0.878721
SNP_A-2118217
AB
0.015625
6.833
0.545807
0.303520
SNP_A-2186627
BB
0.359375
3.514
0.000000
0.478873
Total number of rows:
267269
Table truncated, full table size
13194 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM112780.CEL.gz
43.7 Mb
(ftp)
(http)
CEL
GSM112780_raw.txt.gz
26.6 Mb
(ftp)
(http)
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