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GEO accession:
Sample GSM112781
Query DataSets for GSM112781
Status
Public on Sep 30, 2006
Title
NA10851_Sty_EA
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Male Cell lot number: 3
Biomaterial provider
Coriell NA10851
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA10851
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 05, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3812
Series (1)
GSE5013
Global variation of copy number in the human genome_EA
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotype call
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-2128504
AB
0.007813
12.353
0.461806
0.546083
SNP_A-2183388
AA
0.007813
22.079
0.982036
0.966361
SNP_A-1999657
AB
0.023438
13.442
0.495181
0.347405
SNP_A-2298105
AB
0.007813
5.579
0.341165
0.584058
SNP_A-1999647
AB
0.187500
2.035
0.717039
0.705258
SNP_A-2231588
AB
0.007813
9.298
0.405642
0.424144
SNP_A-1869885
AA
0.007813
22.282
1.000000
0.935236
SNP_A-2025428
AA
0.015625
22.538
1.000000
1.000000
SNP_A-1802236
AB
0.039063
12.988
0.639535
0.603196
SNP_A-2026297
AB
0.039063
13.785
0.255956
0.338751
SNP_A-1784073
AB
0.156250
0.449
0.816853
0.628959
SNP_A-1999656
AB
0.007813
16.012
0.413151
0.425617
SNP_A-1809045
AB
0.460938
1.353
0.180259
0.301640
SNP_A-2082354
AA
0.039063
7.453
0.841890
0.958427
SNP_A-2191778
BB
0.007813
27.079
0.007974
0.020317
SNP_A-2236359
BB
0.007813
15.764
0.096059
0.000000
SNP_A-2104498
BB
0.359375
2.819
0.056270
0.378307
SNP_A-2109914
AA
0.007813
30.049
1.000000
0.970775
SNP_A-2118217
AB
0.187500
7.886
0.751256
0.610465
SNP_A-2186627
BB
0.375000
1.441
0.463450
0.201711
Total number of rows:
267269
Table truncated, full table size
13222 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM112781.CEL.gz
42.6 Mb
(ftp)
(http)
CEL
GSM112781_raw.txt.gz
25.7 Mb
(ftp)
(http)
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