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GEO accession:
Sample GSM112785
Query DataSets for GSM112785
Status
Public on Sep 30, 2006
Title
NA10857_Sty_EA
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Male Cell lot number: 2
Biomaterial provider
Coriell NA10857
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA10857
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 05, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3812
Series (1)
GSE5013
Global variation of copy number in the human genome_EA
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotype call
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-2128504
AB
0.007813
14.820
0.593496
0.522505
SNP_A-2183388
AA
0.007813
24.845
1.000000
1.000000
SNP_A-1999657
AA
0.007813
19.147
0.929091
0.951943
SNP_A-2298105
AB
0.007813
7.832
0.459919
0.576963
SNP_A-1999647
AB
0.125000
3.086
0.743654
0.720588
SNP_A-2231588
AB
0.007813
12.935
0.411382
0.473765
SNP_A-1869885
AA
0.062500
20.524
1.000000
0.915727
SNP_A-2025428
AB
0.062500
10.371
0.356667
0.567599
SNP_A-1802236
BB
0.007813
13.826
0.044811
0.000000
SNP_A-2026297
BB
0.187500
4.264
0.157072
0.145086
SNP_A-1784073
AB
0.031250
0.793
0.765934
0.614896
SNP_A-1999656
AB
0.007813
15.085
0.449115
0.466458
SNP_A-1809045
BB
0.187500
5.677
0.142304
0.162162
SNP_A-2082354
AA
0.039063
4.456
0.865079
0.901639
SNP_A-2191778
BB
0.007813
25.431
0.000000
0.000000
SNP_A-2236359
BB
0.062500
10.894
0.094215
0.078182
SNP_A-2104498
BB
0.015625
12.182
0.039084
0.062847
SNP_A-2109914
AA
0.007813
25.370
1.000000
0.967413
SNP_A-2118217
AB
0.093750
6.075
0.839674
0.308133
SNP_A-2186627
BB
0.125000
3.046
0.225394
0.055372
Total number of rows:
267269
Table truncated, full table size
13224 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM112785.CEL.gz
43.0 Mb
(ftp)
(http)
CEL
GSM112785_raw.txt.gz
26.0 Mb
(ftp)
(http)
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