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GEO accession:
Sample GSM112838
Query DataSets for GSM112838
Status
Public on Sep 30, 2006
Title
NA12154_Sty_EA
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Male Cell lot number: 3
Biomaterial provider
Coriell NA12154
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA12154
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 06, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3812
Series (1)
GSE5013
Global variation of copy number in the human genome_EA
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotype call
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-2128504
AB
0.023438
13.685
0.598413
0.513841
SNP_A-2183388
AA
0.007813
32.060
0.984118
1.000000
SNP_A-1999657
AA
0.023438
20.434
0.908898
0.979600
SNP_A-2298105
AB
0.023438
7.498
0.411680
0.531220
SNP_A-1999647
AA
0.093750
7.109
0.985681
1.000000
SNP_A-2231588
AB
0.023438
12.108
0.399524
0.448391
SNP_A-1869885
AA
0.023438
20.928
1.000000
0.910647
SNP_A-2025428
AB
0.007813
5.482
0.290150
0.668299
SNP_A-1802236
AB
0.093750
9.273
0.880109
0.659125
SNP_A-2026297
BB
0.382813
0.209
0.159468
0.170241
SNP_A-1784073
AB
0.093750
1.428
0.747891
0.554553
SNP_A-1999656
AB
0.007813
8.779
0.402041
0.440442
SNP_A-1809045
AB
0.023438
6.248
0.303003
0.311552
SNP_A-2082354
AA
0.023438
9.152
0.906174
1.000000
SNP_A-2191778
BB
0.007813
26.569
0.004719
0.000000
SNP_A-2236359
BB
0.023438
10.588
0.074744
0.031250
SNP_A-2104498
AB
0.265625
0.052
0.449890
0.461983
SNP_A-2109914
AB
0.007813
7.627
0.735319
0.520699
SNP_A-2118217
AB
0.093750
4.098
1.000000
0.308695
SNP_A-2186627
BB
0.125000
4.818
0.326562
0.000000
Total number of rows:
267269
Table truncated, full table size
13209 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM112838.CEL.gz
43.8 Mb
(ftp)
(http)
CEL
GSM112838_raw.txt.gz
26.7 Mb
(ftp)
(http)
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