GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM112852
Query DataSets for GSM112852
Status
Public on Sep 30, 2006
Title
NA12751_Sty_EA
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Female Cell lot number: 2
Biomaterial provider
Coriell NA12751
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA12751
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 06, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3812
Series (1)
GSE5013
Global variation of copy number in the human genome_EA
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotype call
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-2128504
BB
0.007813
6.668
0.095475
0.123016
SNP_A-2183388
AA
0.062500
5.598
0.783722
0.896527
SNP_A-1999657
AB
0.007813
12.444
0.379310
0.328184
SNP_A-2298105
BB
0.023438
14.842
0.038889
0.000000
SNP_A-1999647
AB
0.187500
2.096
0.808247
0.740135
SNP_A-2231588
AA
0.023438
13.231
1.000000
0.842342
SNP_A-1869885
AA
0.062500
16.248
1.000000
0.866813
SNP_A-2025428
AB
0.015625
11.441
0.437173
0.580947
SNP_A-1802236
AA
0.007813
24.437
0.945351
0.975904
SNP_A-2026297
AB
0.007813
12.013
0.323081
0.356923
SNP_A-1784073
AA
0.015625
6.027
0.866186
0.947063
SNP_A-1999656
BB
0.023438
7.737
0.070743
0.154630
SNP_A-1809045
BB
0.007813
14.323
0.106952
0.060798
SNP_A-2082354
AA
0.312500
2.773
0.776119
0.887569
SNP_A-2191778
BB
0.007813
25.873
0.000000
0.027431
SNP_A-2236359
BB
0.062500
3.381
0.193580
0.091912
SNP_A-2104498
AA
0.015625
6.263
0.900000
0.910985
SNP_A-2109914
AA
0.007813
14.895
1.000000
0.846168
SNP_A-2118217
AB
0.015625
5.954
0.537291
0.298074
SNP_A-2186627
BB
0.265625
2.582
0.278689
0.000000
Total number of rows:
267269
Table truncated, full table size
13206 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM112852.CEL.gz
43.5 Mb
(ftp)
(http)
CEL
GSM112852_raw.txt.gz
26.4 Mb
(ftp)
(http)
TXT
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
