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GEO accession:
Sample GSM112871
Query DataSets for GSM112871
Status
Public on Sep 30, 2006
Title
NA12878_Sty_EA
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Female Cell lot number: 4
Biomaterial provider
Coriell NA12878
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA12878
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 06, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3812
Series (1)
GSE5013
Global variation of copy number in the human genome_EA
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotype call
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-2128504
AB
0.023438
6.387
0.334559
0.286708
SNP_A-2183388
AB
0.062500
5.552
0.706242
0.832391
SNP_A-1999657
AB
0.023438
9.051
0.408981
0.357614
SNP_A-2298105
AB
0.250000
0.666
0.316011
0.287265
SNP_A-1999647
AB
0.312500
0.081
0.791137
0.736307
SNP_A-2231588
AA
0.007813
10.236
0.970443
0.846074
SNP_A-1869885
AA
0.007813
21.977
1.000000
0.950106
SNP_A-2025428
BB
0.023438
17.996
0.180445
0.000000
SNP_A-1802236
AB
0.015625
13.033
0.656334
0.581978
SNP_A-2026297
AB
0.093750
2.923
0.192308
0.279935
SNP_A-1784073
AA
0.015625
5.372
0.872129
0.861341
SNP_A-1999656
BB
0.007813
8.670
0.077911
0.119134
SNP_A-1809045
BB
0.007813
24.808
0.000000
0.000000
SNP_A-2082354
AA
0.132813
3.265
0.768858
0.863636
SNP_A-2191778
BB
0.007813
28.738
0.000000
0.014011
SNP_A-2236359
BB
0.007813
19.549
0.000000
0.046875
SNP_A-2104498
BB
0.265625
8.405
0.000000
0.453145
SNP_A-2109914
AA
0.007813
21.281
1.000000
0.946275
SNP_A-2118217
AB
0.187500
4.753
0.715971
0.288195
SNP_A-2186627
BB
0.078125
8.604
0.208347
0.000000
Total number of rows:
267269
Table truncated, full table size
13220 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM112871.CEL.gz
43.2 Mb
(ftp)
(http)
CEL
GSM112871_raw.txt.gz
26.1 Mb
(ftp)
(http)
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