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GEO accession:
Sample GSM112873
Query DataSets for GSM112873
Status
Public on Sep 30, 2006
Title
NA12892_Sty_EA
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Female Cell lot number: 2
Biomaterial provider
Coriell NA12892
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA12892
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 06, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3812
Series (1)
GSE5013
Global variation of copy number in the human genome_EA
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotype call
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-2128504
BB
0.007813
24.383
0.037488
0.051200
SNP_A-2183388
AB
0.007813
12.056
0.656792
0.689973
SNP_A-1999657
BB
0.007813
20.637
0.001799
0.015663
SNP_A-2298105
BB
0.023438
17.319
0.097996
0.107764
SNP_A-1999647
AB
0.062500
16.964
0.547778
0.451089
SNP_A-2231588
AA
0.007813
6.069
0.883046
0.894292
SNP_A-1869885
AA
0.007813
15.381
1.000000
0.894865
SNP_A-2025428
AB
0.007813
10.442
0.475781
0.585563
SNP_A-1802236
AA
0.007813
22.029
1.000000
0.979345
SNP_A-2026297
AB
0.023438
17.301
0.331567
0.404413
SNP_A-1784073
AA
0.015625
7.943
0.885299
0.928471
SNP_A-1999656
BB
0.039063
5.103
0.125751
0.151276
SNP_A-1809045
BB
0.062500
2.915
0.180225
0.153073
SNP_A-2082354
AA
0.007813
8.384
0.861362
0.931319
SNP_A-2191778
BB
0.007813
26.859
0.000000
0.000000
SNP_A-2236359
BB
0.007813
13.470
0.095833
0.019718
SNP_A-2104498
BB
0.125000
9.204
0.000000
0.374835
SNP_A-2109914
AA
0.007813
20.737
1.000000
0.885976
SNP_A-2118217
AB
0.046875
7.421
0.607389
0.326968
SNP_A-2186627
BB
0.007813
6.169
0.138298
0.000000
Total number of rows:
267269
Table truncated, full table size
13231 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM112873.CEL.gz
44.0 Mb
(ftp)
(http)
CEL
GSM112873_raw.txt.gz
26.7 Mb
(ftp)
(http)
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