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GEO accession:
Sample GSM112882
Query DataSets for GSM112882
Status
Public on Sep 30, 2006
Title
NA18507_Sty_EA
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Male Cell lot number: 1
Biomaterial provider
Coriell NA18507
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA18507
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 06, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3812
Series (1)
GSE5013
Global variation of copy number in the human genome_EA
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotype call
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-2128504
AB
0.007813
16.305
0.565441
0.490030
SNP_A-2183388
AB
0.007813
4.505
0.674238
0.745314
SNP_A-1999657
AA
0.007813
21.698
1.000000
1.000000
SNP_A-2298105
AB
0.007813
8.397
0.375874
0.447613
SNP_A-1999647
AA
0.265625
3.571
0.902401
1.000000
SNP_A-2231588
AB
0.007813
19.340
0.418308
0.409134
SNP_A-1869885
AA
0.023438
18.399
1.000000
0.959509
SNP_A-2025428
AB
0.250000
3.363
0.205765
0.704380
SNP_A-1802236
AB
0.007813
5.498
0.628571
0.602281
SNP_A-2026297
BB
0.382813
1.067
0.169443
0.151049
SNP_A-1784073
AB
0.265625
1.131
0.764127
0.735029
SNP_A-1999656
AA
0.007813
12.180
0.983929
0.858060
SNP_A-1809045
AB
0.007813
18.248
0.538716
0.501148
SNP_A-2082354
AB
0.023438
13.995
0.407883
0.284350
SNP_A-2191778
AB
0.039063
11.355
0.380000
0.430658
SNP_A-2236359
BB
0.187500
3.021
0.154506
0.065840
SNP_A-2104498
AA
0.046875
13.760
1.000000
0.940828
SNP_A-2109914
AA
0.007813
16.216
1.000000
0.892665
SNP_A-2118217
AA
0.078125
6.999
0.707143
1.000000
SNP_A-2186627
BB
0.250000
0.000
0.000000
0.294053
Total number of rows:
267269
Table truncated, full table size
13211 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM112882.CEL.gz
44.3 Mb
(ftp)
(http)
CEL
GSM112882_raw.txt.gz
13.3 Mb
(ftp)
(http)
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