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GEO accession:
Sample GSM112977
Query DataSets for GSM112977
Status
Public on Sep 30, 2006
Title
NA18563_Sty_EA
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Male Cell lot number: 2
Biomaterial provider
Coriell NA18563
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA18563
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 06, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3812
Series (1)
GSE5013
Global variation of copy number in the human genome_EA
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotype call
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-2128504
AB
0.007813
8.694
0.643651
0.453285
SNP_A-2183388
AB
0.039063
8.724
0.667391
0.789619
SNP_A-1999657
AB
0.062500
4.173
0.572674
0.270833
SNP_A-2298105
AB
0.007813
3.806
0.372387
0.480818
SNP_A-1999647
AB
0.023438
5.296
0.716544
0.709322
SNP_A-2231588
AB
0.007813
10.215
0.422483
0.487143
SNP_A-1869885
AA
0.007813
14.169
1.000000
0.920934
SNP_A-2025428
AA
0.007813
13.918
1.000000
0.955108
SNP_A-1802236
BB
0.007813
14.821
0.056180
0.015424
SNP_A-2026297
AB
0.062500
11.862
0.201154
0.358353
SNP_A-1784073
AB
0.125000
4.122
0.712726
0.782759
SNP_A-1999656
AB
0.039063
10.308
0.313697
0.341009
SNP_A-1809045
AB
0.007813
18.032
0.463464
0.521040
SNP_A-2082354
AB
0.039063
12.847
0.591589
0.269807
SNP_A-2191778
BB
0.007813
28.907
0.000827
0.013948
SNP_A-2236359
BB
0.093750
3.035
0.073623
0.000000
SNP_A-2104498
BB
0.023438
10.676
0.000000
0.000000
SNP_A-2109914
AA
0.007813
20.085
1.000000
0.870833
SNP_A-2118217
AA
0.046875
17.963
1.000000
1.000000
SNP_A-2186627
AA
0.546875
-1.562
0.847656
0.628173
Total number of rows:
267269
Table truncated, full table size
13207 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM112977.CEL.gz
42.7 Mb
(ftp)
(http)
CEL
GSM112977_raw.txt.gz
25.8 Mb
(ftp)
(http)
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