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GEO accession:
Sample GSM112980
Query DataSets for GSM112980
Status
Public on Sep 30, 2006
Title
NA18570_Sty_EA
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Female Cell lot number: 1
Biomaterial provider
Coriell NA18570
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA18570
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 06, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3812
Series (1)
GSE5013
Global variation of copy number in the human genome_EA
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotype call
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-2128504
AB
0.023438
6.645
0.350412
0.266055
SNP_A-2183388
AB
0.187500
5.681
0.625229
0.786799
SNP_A-1999657
BB
0.007813
14.681
0.080061
0.000000
SNP_A-2298105
BB
0.093750
6.731
0.154355
0.289803
SNP_A-1999647
AB
0.156250
0.012
0.818515
0.720625
SNP_A-2231588
AA
0.007813
11.434
1.000000
0.842105
SNP_A-1869885
AA
0.023438
16.388
1.000000
0.904661
SNP_A-2025428
AA
0.007813
8.712
1.000000
1.000000
SNP_A-1802236
AA
0.007813
26.702
1.000000
0.989684
SNP_A-2026297
AB
0.312500
1.323
0.194210
0.250852
SNP_A-1784073
AA
0.015625
5.955
0.871879
0.865381
SNP_A-1999656
BB
0.062500
6.202
0.108182
0.238335
SNP_A-1809045
AB
0.093750
8.267
0.360754
0.434568
SNP_A-2082354
AB
0.039063
8.093
0.668861
0.600811
SNP_A-2191778
BB
0.007813
23.611
0.000000
0.000000
SNP_A-2236359
BB
0.007813
9.723
0.159966
0.000000
SNP_A-2104498
AA
0.031250
5.431
0.970430
0.916007
SNP_A-2109914
AA
0.007813
21.835
1.000000
0.769217
SNP_A-2118217
AA
0.015625
17.697
0.985185
0.998673
SNP_A-2186627
AA
0.265625
0.409
0.825617
0.729651
Total number of rows:
267269
Table truncated, full table size
13182 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM112980.CEL.gz
44.1 Mb
(ftp)
(http)
CEL
GSM112980_raw.txt.gz
26.9 Mb
(ftp)
(http)
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