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GEO accession:
Sample GSM113000
Query DataSets for GSM113000
Status
Public on Sep 30, 2006
Title
NA18623_Sty_EA
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Male Cell lot number: 1
Biomaterial provider
Coriell NA18623
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA18623
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 06, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3812
Series (1)
GSE5013
Global variation of copy number in the human genome_EA
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotype call
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-2128504
AB
0.007813
13.233
0.546980
0.479381
SNP_A-2183388
AB
0.250000
1.363
0.695545
0.812212
SNP_A-1999657
AB
0.007813
12.162
0.401734
0.328343
SNP_A-2298105
AB
0.007813
9.785
0.350458
0.530500
SNP_A-1999647
AA
0.187500
7.899
0.933283
0.992466
SNP_A-2231588
AB
0.007813
15.220
0.444487
0.420465
SNP_A-1869885
AA
0.023438
19.238
1.000000
0.843500
SNP_A-2025428
AA
0.015625
14.684
0.968300
1.000000
SNP_A-1802236
AB
0.132813
5.651
0.537037
0.669620
SNP_A-2026297
AB
0.007813
18.431
0.385797
0.452058
SNP_A-1784073
AA
0.265625
0.888
0.813552
0.735425
SNP_A-1999656
AB
0.007813
12.224
0.360140
0.537225
SNP_A-1809045
BB
0.062500
7.051
0.112717
0.174385
SNP_A-2082354
AA
0.093750
5.944
0.855550
1.000000
SNP_A-2191778
BB
0.007813
25.573
0.000000
0.000000
SNP_A-2236359
BB
0.187500
1.900
0.184229
0.171975
SNP_A-2104498
AB
0.078125
3.221
0.302326
0.430894
SNP_A-2109914
AA
0.007813
26.497
1.000000
0.966876
SNP_A-2118217
AA
0.187500
11.350
0.440754
1.000000
SNP_A-2186627
AB
0.078125
2.560
0.723468
0.600616
Total number of rows:
267269
Table truncated, full table size
13220 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM113000.CEL.gz
44.0 Mb
(ftp)
(http)
CEL
GSM113000_raw.txt.gz
26.8 Mb
(ftp)
(http)
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