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GEO accession:
Sample GSM113033
Query DataSets for GSM113033
Status
Public on Sep 30, 2006
Title
NA18944_Sty_EA
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Male Cell lot number: 2
Biomaterial provider
Coriell NA18944
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA18944
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 06, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3812
Series (1)
GSE5013
Global variation of copy number in the human genome_EA
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotype call
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-2128504
AB
0.007813
13.266
0.582286
0.516372
SNP_A-2183388
AB
0.007813
12.301
0.630578
0.691430
SNP_A-1999657
AA
0.007813
17.195
0.904851
0.969965
SNP_A-2298105
AB
0.007813
5.994
0.339528
0.538355
SNP_A-1999647
AB
0.031250
3.241
0.746289
0.724251
SNP_A-2231588
AB
0.007813
18.289
0.462759
0.497904
SNP_A-1869885
AA
0.039063
18.010
1.000000
0.915719
SNP_A-2025428
AA
0.007813
20.443
1.000000
1.000000
SNP_A-1802236
AB
0.015625
13.548
0.570707
0.629299
SNP_A-2026297
AB
0.023438
20.425
0.390827
0.399777
SNP_A-1784073
AB
0.156250
0.096
0.858367
0.627482
SNP_A-1999656
AB
0.007813
15.240
0.446078
0.487791
SNP_A-1809045
BB
0.132813
4.600
0.113583
0.205966
SNP_A-2082354
AA
0.250000
6.143
0.739913
0.893966
SNP_A-2191778
BB
0.007813
30.944
0.000000
0.000000
SNP_A-2236359
BB
0.023438
4.875
0.173098
0.000000
SNP_A-2104498
AB
0.031250
3.417
0.138278
0.388235
SNP_A-2109914
AA
0.007813
29.497
1.000000
0.998000
SNP_A-2118217
AA
0.132813
8.508
0.402778
1.000000
SNP_A-2186627
AB
0.046875
4.923
0.663770
0.561404
Total number of rows:
267269
Table truncated, full table size
13230 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM113033.CEL.gz
44.3 Mb
(ftp)
(http)
CEL
GSM113033_raw.txt.gz
27.0 Mb
(ftp)
(http)
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