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GEO accession:
Sample GSM113045
Query DataSets for GSM113045
Status
Public on Sep 30, 2006
Title
NA18964_Sty_EA
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Female Cell lot number: 2
Biomaterial provider
Coriell NA18964
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA18964
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 06, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3812
Series (1)
GSE5013
Global variation of copy number in the human genome_EA
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotype call
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-2128504
AB
0.023438
15.220
0.506807
0.490291
SNP_A-2183388
AB
0.007813
13.938
0.672232
0.716131
SNP_A-1999657
BB
0.007813
17.513
0.140838
0.000000
SNP_A-2298105
BB
0.007813
15.891
0.028215
0.207850
SNP_A-1999647
AB
0.046875
17.845
0.560871
0.512671
SNP_A-2231588
AA
0.023438
24.431
1.000000
0.977860
SNP_A-1869885
AA
0.023438
15.055
1.000000
0.947400
SNP_A-2025428
AB
0.007813
8.701
0.532300
0.685008
SNP_A-1802236
AA
0.007813
17.355
1.000000
0.970247
SNP_A-2026297
AB
0.093750
8.656
0.309013
0.332566
SNP_A-1784073
AA
0.046875
6.322
0.896353
1.000000
SNP_A-1999656
BB
0.007813
8.795
0.040315
0.140000
SNP_A-1809045
AB
0.007813
13.344
0.380269
0.369544
SNP_A-2082354
AB
0.062500
9.574
0.619792
0.641588
SNP_A-2191778
BB
0.007813
31.132
0.000000
0.000000
SNP_A-2236359
BB
0.007813
12.649
0.045455
0.000000
SNP_A-2104498
BB
0.046875
4.740
0.198235
0.137725
SNP_A-2109914
AA
0.007813
13.480
0.993585
0.948579
SNP_A-2118217
AA
0.125000
15.573
0.517636
1.000000
SNP_A-2186627
AB
0.359375
0.034
0.914653
0.568598
Total number of rows:
267269
Table truncated, full table size
13232 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM113045.CEL.gz
43.4 Mb
(ftp)
(http)
CEL
GSM113045_raw.txt.gz
26.3 Mb
(ftp)
(http)
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