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GEO accession:
Sample GSM113047
Query DataSets for GSM113047
Status
Public on Sep 30, 2006
Title
NA18966_Sty_EA
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Male Cell lot number: 2
Biomaterial provider
Coriell NA18966
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA18966
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 06, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3812
Series (1)
GSE5013
Global variation of copy number in the human genome_EA
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotype call
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-2128504
AB
0.007813
14.182
0.534830
0.425347
SNP_A-2183388
AB
0.007813
11.748
0.656497
0.752145
SNP_A-1999657
AB
0.007813
9.337
0.540541
0.380796
SNP_A-2298105
AB
0.007813
9.599
0.464368
0.585176
SNP_A-1999647
AA
0.007813
5.800
0.908705
0.998567
SNP_A-2231588
AB
0.007813
12.856
0.487981
0.465657
SNP_A-1869885
AA
0.039063
12.722
1.000000
0.878995
SNP_A-2025428
AB
0.062500
8.336
0.465064
0.743142
SNP_A-1802236
AB
0.023438
14.212
0.594444
0.536624
SNP_A-2026297
BB
0.039063
9.584
0.111747
0.070269
SNP_A-1784073
AB
0.265625
3.131
0.669849
0.301404
SNP_A-1999656
AB
0.007813
14.809
0.522140
0.475728
SNP_A-1809045
AB
0.187500
3.983
0.302143
0.344583
SNP_A-2082354
AB
0.039063
9.729
0.628401
0.652574
SNP_A-2191778
BB
0.007813
27.692
0.000000
0.009694
SNP_A-2236359
BB
0.007813
7.897
0.140851
0.105634
SNP_A-2104498
BB
0.156250
0.478
0.063953
0.244681
SNP_A-2109914
AA
0.007813
20.802
1.000000
0.880890
SNP_A-2118217
AA
0.125000
7.160
0.506512
0.998747
SNP_A-2186627
AA
0.125000
2.260
0.914787
0.758824
Total number of rows:
267269
Table truncated, full table size
13216 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM113047.CEL.gz
43.5 Mb
(ftp)
(http)
CEL
GSM113047_raw.txt.gz
26.5 Mb
(ftp)
(http)
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