GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM113060
Query DataSets for GSM113060
Status
Public on Sep 30, 2006
Title
NA18981_Sty_EA
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Female Cell lot number: 1
Biomaterial provider
Coriell NA18981
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA18981
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 06, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3812
Series (1)
GSE5013
Global variation of copy number in the human genome_EA
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotype call
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-2128504
AB
0.007813
19.687
0.559075
0.511815
SNP_A-2183388
AB
0.039063
13.275
0.583344
0.773748
SNP_A-1999657
BB
0.007813
28.280
0.017367
0.011883
SNP_A-2298105
BB
0.007813
6.201
0.156831
0.110356
SNP_A-1999647
AB
0.078125
4.020
0.785102
0.681362
SNP_A-2231588
AA
0.023438
15.398
1.000000
0.884199
SNP_A-1869885
AA
0.062500
14.035
1.000000
0.848959
SNP_A-2025428
AA
0.007813
22.072
0.986239
1.000000
SNP_A-1802236
AB
0.015625
6.504
0.676471
0.610727
SNP_A-2026297
AB
0.007813
14.332
0.318548
0.417273
SNP_A-1784073
AB
0.187500
3.470
0.745124
0.678425
SNP_A-1999656
BB
0.062500
4.707
0.132032
0.162389
SNP_A-1809045
AB
0.382813
2.450
0.235365
0.205447
SNP_A-2082354
AB
0.023438
10.681
0.659267
0.568227
SNP_A-2191778
BB
0.007813
24.374
0.000000
0.000000
SNP_A-2236359
BB
0.093750
8.520
0.230657
0.000000
SNP_A-2104498
AB
0.453125
1.146
0.199799
0.289837
SNP_A-2109914
AA
0.007813
13.430
1.000000
0.888755
SNP_A-2118217
AA
0.015625
5.316
0.811728
1.000000
SNP_A-2186627
BB
0.031250
2.190
0.084052
0.032258
Total number of rows:
267269
Table truncated, full table size
13207 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM113060.CEL.gz
44.6 Mb
(ftp)
(http)
CEL
GSM113060_raw.txt.gz
27.3 Mb
(ftp)
(http)
TXT
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
