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GEO accession:
Sample GSM113076
Query DataSets for GSM113076
Status
Public on Sep 30, 2006
Title
NA19093_Sty_EA
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Female Cell lot number: 1
Biomaterial provider
Coriell NA19093
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA19093
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 06, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3812
Series (1)
GSE5013
Global variation of copy number in the human genome_EA
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotype call
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-2128504
AB
0.007813
14.373
0.562130
0.566384
SNP_A-2183388
AA
0.007813
11.183
0.895035
0.939438
SNP_A-1999657
BB
0.007813
10.666
0.085294
0.020174
SNP_A-2298105
BB
0.062500
6.278
0.145134
0.147426
SNP_A-1999647
AB
0.062500
8.447
0.652760
0.680869
SNP_A-2231588
AA
0.007813
15.022
1.000000
0.941176
SNP_A-1869885
AA
0.007813
22.384
1.000000
0.958628
SNP_A-2025428
AB
0.312500
2.721
0.286810
0.594885
SNP_A-1802236
AA
0.007813
26.000
1.000000
1.000000
SNP_A-2026297
AB
0.039063
16.137
0.305987
0.340123
SNP_A-1784073
AA
0.015625
10.039
0.931364
1.000000
SNP_A-1999656
BB
0.023438
6.913
0.121622
0.094017
SNP_A-1809045
AB
0.023438
13.192
0.316689
0.330889
SNP_A-2082354
AB
0.007813
13.333
0.619117
0.562081
SNP_A-2191778
BB
0.007813
27.556
0.003388
0.002431
SNP_A-2236359
BB
0.007813
8.708
0.130273
0.007813
SNP_A-2104498
BB
0.500000
0.000
0.108108
0.441935
SNP_A-2109914
AA
0.007813
10.901
0.995434
0.929464
SNP_A-2118217
AB
0.093750
11.658
0.687500
0.509975
SNP_A-2186627
AB
0.265625
0.023
0.714385
0.616981
Total number of rows:
267269
Table truncated, full table size
13225 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM113076.CEL.gz
41.7 Mb
(ftp)
(http)
CEL
GSM113076_raw.txt.gz
24.9 Mb
(ftp)
(http)
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