GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM113174
Query DataSets for GSM113174
Status
Public on Sep 30, 2006
Title
NA18576_TechnicalReplicate_Nsp_EA_rep1
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Female Cell lot number: 2
Biomaterial provider
Coriell NA18576
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA18576
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used as technical replicates to determine reproducibility
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 06, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3811
Series (1)
GSE5013
Global variation of copy number in the human genome_EA
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotype call
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1825791
AA
0.007813
16.663
0.858333
0.982818
SNP_A-2222671
AA
0.039063
5.797
0.797546
0.980159
SNP_A-1879718
AB
0.015625
10.007
0.289694
0.308276
SNP_A-2192013
BB
0.023438
21.197
0.000000
0.015385
SNP_A-2161785
AA
0.046875
9.637
0.924877
1.000000
SNP_A-1924692
AB
0.023438
13.054
0.489796
0.413118
SNP_A-2059484
AA
0.023438
17.329
1.000000
0.994135
SNP_A-1921272
AA
0.007813
15.749
1.000000
1.000000
SNP_A-2045948
BB
0.039063
10.246
0.113139
0.150564
SNP_A-2024190
AA
0.265625
1.748
0.961694
0.683908
SNP_A-2166839
AB
0.382813
1.666
0.704334
0.724570
SNP_A-1999651
BB
0.007813
16.448
0.000000
0.079310
SNP_A-2049421
BB
0.023438
13.037
0.113812
0.035294
SNP_A-2220047
AB
0.015625
2.483
0.396240
0.334320
SNP_A-1916560
BB
0.007813
24.280
0.000000
0.000000
SNP_A-2094813
AB
0.007813
10.864
0.490373
0.495814
SNP_A-2190792
AA
0.312500
1.618
0.838374
0.851389
SNP_A-2033074
BB
0.093750
8.230
0.055882
0.289157
SNP_A-2131660
AA
0.007813
16.048
1.000000
0.914493
SNP_A-1780523
AB
0.265625
6.811
0.897436
0.642586
Total number of rows:
267231
Table truncated, full table size
13185 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM113174.CEL.gz
40.2 Mb
(ftp)
(http)
CEL
GSM113174_raw.txt.gz
11.8 Mb
(ftp)
(http)
TXT
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
