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GEO accession:
Sample GSM113193
Query DataSets for GSM113193
Status
Public on Sep 30, 2006
Title
NA10851_Nsp_EA_rep1
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Male Cell lot number: 3
Biomaterial provider
Coriell NA10851
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA10851
Extracted molecule
genomic DNA
Label
Biotin
Description
Samples used for parameter tuning and validation of algorithm
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 06, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3811
Series (1)
GSE5013
Global variation of copy number in the human genome_EA
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotype call
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1825791
AB
0.046875
10.409
0.202970
0.436508
SNP_A-2222671
AB
0.007813
2.072
0.576607
0.364662
SNP_A-1879718
AA
0.015625
7.201
0.809817
1.000000
SNP_A-2192013
BB
0.023438
15.606
0.005828
0.082431
SNP_A-2161785
AB
0.250000
3.100
0.450769
0.285124
SNP_A-1924692
AB
0.023438
5.018
0.557884
0.614629
SNP_A-2059484
BB
0.007813
16.540
0.000000
0.000000
SNP_A-1921272
BB
0.093750
7.015
0.037500
0.114007
SNP_A-2045948
AB
0.132813
5.823
0.209239
0.376374
SNP_A-2024190
AB
0.187500
2.559
0.289203
0.132813
SNP_A-2166839
AA
0.007813
27.593
1.000000
1.000000
SNP_A-1999651
AB
0.132813
8.073
0.782313
0.542253
SNP_A-2049421
BB
0.007813
26.347
0.011836
0.000000
SNP_A-2220047
AB
0.078125
4.982
0.067460
0.407307
SNP_A-1916560
AB
0.023438
6.699
0.437500
0.358815
SNP_A-2094813
AB
0.007813
9.000
0.531378
0.494893
SNP_A-2190792
AB
0.023438
13.446
0.520768
0.570707
SNP_A-2033074
BB
0.062500
6.421
0.000000
0.295100
SNP_A-2131660
AB
0.382813
1.048
0.916667
0.404475
SNP_A-1780523
AA
0.023438
16.645
1.000000
0.935025
Total number of rows:
267231
Table truncated, full table size
13166 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM113193.CEL.gz
42.6 Mb
(ftp)
(http)
CEL
GSM113193_raw.txt.gz
12.7 Mb
(ftp)
(http)
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