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Sample GSM118625 Query DataSets for GSM118625
Status Public on Apr 01, 2010
Title Mouse liver WT_430A
Sample type RNA
 
Source name Livers from non-transgenic, wild-type mice provided with drinking water containing 25 micrograms/ml doxycycline plus 2.5% sucrose for 4 days
Organism Mus musculus
Characteristics genetic background: Hybrid B6SJL
gender: Male
age: 32-37 days old
tissue: Liver
genotype: wild type
Biomaterial provider Sarah Comerford, Robert Hammer lab, UT Southwestern
Extracted molecule total RNA
Extraction protocol RNA STAT-60 (Tel-Test)
Label standard Affymetrix protocol
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description NA
Data processing MAS 5.0, target value = 250, Tau = 0.015
 
Submission date Jul 06, 2006
Last update date Nov 23, 2009
Contact name Nikolaus Schultz
E-mail(s) schultz@cbio.mskcc.org
Phone 646-888-2604
Organization name Memorial Sloan-Kettering Cancer Center
Department Computational Biology Center
Street address 1275 York Ave, Box 460
City New York
State/province NY
ZIP/Postal code 10065
Country USA
 
Platform ID GPL339
Series (1)
GSE5242 Hepatic gene expression in transgenic mice with conditional liver-specific expression of the SV40 17kT/LT oncoproteins

Data table header descriptions
ID_REF
VALUE MAS 5 signal
ABS_CALL Detection call
DETECTION P-VALUE p-value for detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 290.3 P 0.000581
AFFX-BioB-M_at 972.8 P 0.000127
AFFX-BioB-3_at 298.7 P 0.000225
AFFX-BioC-5_at 1028.5 P 0.00006
AFFX-BioC-3_at 830.9 P 0.000044
AFFX-BioDn-5_at 813.5 P 0.000044
AFFX-BioDn-3_at 4206.9 P 0.000044
AFFX-CreX-5_at 11599.4 P 0.000044
AFFX-CreX-3_at 16804.3 P 0.000044
AFFX-DapX-5_at 10.3 A 0.425962
AFFX-DapX-M_at 27.5 A 0.262827
AFFX-DapX-3_at 6.1 A 0.737173
AFFX-LysX-5_at 20 A 0.227636
AFFX-LysX-M_at 7.3 A 0.724854
AFFX-LysX-3_at 9.9 A 0.574044
AFFX-PheX-5_at 3.1 A 0.949771
AFFX-PheX-M_at 1.5 A 0.978098
AFFX-PheX-3_at 15.1 A 0.52976
AFFX-ThrX-5_at 3.7 A 0.783476
AFFX-ThrX-M_at 15.1 A 0.58862

Total number of rows: 22690

Table truncated, full table size 612 Kbytes.




Supplementary file Size Download File type/resource
GSM118625.CEL.gz 3.4 Mb (ftp)(http) CEL
GSM118625.CHP.gz 5.9 Mb (ftp)(http) CHP
GSM118625.DAT.gz 36.8 Mb (ftp)(http) DAT
GSM118625.EXP.gz 501 b (ftp)(http) EXP
GSM118625.RPT.gz 1.1 Kb (ftp)(http) RPT
Processed data included within Sample table
Processed data provided as supplementary file

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