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Status |
Public on Aug 15, 2007 |
Title |
wt 150 minutes growth rep3 |
Sample type |
RNA |
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|
Source name |
Escherichia coli MG1655 wt grown 150 minutes
|
Organism |
Escherichia coli |
Characteristics |
wildtype Escherichia coli 150 minutes growth in LB
|
Treatment protocol |
Cells were grown in LB at 37 degrees celsius with shaking for 150 minutes
|
Growth protocol |
Saturated E. coli cultures were diluted in LB toan OD.of 0.05 OD600, grown at 37 degrees Celsius
|
Extracted molecule |
total RNA |
Extraction protocol |
MasterPure RNA purification Kit per manufacturers protocol
|
Label |
biotin
|
Label protocol |
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
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|
|
Hybridization protocol |
Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip E.coli antisense. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
|
Scan protocol |
GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
|
Description |
Gene expression data from MG1655 wildtype after 150 minutes of growth in LB medium
|
Data processing |
The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
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Submission date |
Mar 27, 2007 |
Last update date |
Mar 29, 2007 |
Contact name |
Robert Osuna |
E-mail(s) |
osuna@albany.edu
|
Phone |
518-591-8827
|
Fax |
518-442-4767
|
Organization name |
University at Albany
|
Department |
Biology
|
Lab |
Dr. Osuna
|
Street address |
1400 Washington Avenue
|
City |
Albany |
State/province |
NY |
ZIP/Postal code |
12222 |
Country |
USA |
|
|
Platform ID |
GPL199 |
Series (2) |
GSE7380 |
WT (Fis+) strain |
GSE7398 |
Expression data from E. coli covering four phases of growth in Fis KO and WT (Fis+) strains |
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