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Sample GSM255828 Query DataSets for GSM255828
Status Public on Feb 09, 2008
Title WT-GFP-lamin A Induction: day 10 Replicate B (3b_WT_10d_B)
Sample type RNA
 
Source name hTERT-immortalized human skin fibroblasts
Organism Homo sapiens
Characteristics Cell line expressing inducible wt-GFP-lamin A. Induction: day 10. Replicate B
Extracted molecule total RNA
Extraction protocol RNA extracted with Qiagen coulumns
Label Biotin
Label protocol First and second strand cDNA was prepared from the total RNA samples
Biotinylated cRNA target was prepared from the DNA template.
 
Hybridization protocol cRNA was fragmented to uniform size.
CodeLink Bioarrays were hybridized with the cRNA target and stained with Cy5-streptavidin
Scan protocol Slides were washed and then scanned on an Axon GenePix 4000B scanner
Description Labelling, hybridisation and data analysis was performed by GenUs Biosystems
Data processing Data was analyzed with CodeLink and GeneSpring software packages
 
Submission date Jan 09, 2008
Last update date Jan 10, 2008
Contact name paola scaffidi
E-mail(s) scaffidp@mail.nih.gov
Organization name NCI, NIH
Street address 41 Library Drive, B508
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL2895
Series (1)
GSE10123 Progerin-induced changes in gene expression

Data table header descriptions
ID_REF
RAWINTENSITY Raw signal intensity value
VALUE Median normalized signal intensity value
CODELINKFLAG hybridization quality flag
SPOTMEAN Spot mean
SPOTMEDIAN Spot median
BKGMEAN Background mean
BKGMEDIAN Background median

Data table
ID_REF RAWINTENSITY VALUE CODELINKFLAG SPOTMEAN SPOTMEDIAN BKGMEAN BKGMEDIAN
1002 657.5866699 17.92096236 G 709.5866699 808 55.20329666 52
1003 10.71875 0.292114065 L 62.71875 56 55.89629745 52
1004 9.561405182 0.260573382 L 60.56140518 57 53.09999847 51
1005 3.322582245 0.090549085 L 56.32258224 49 55.80714417 53
1006 7.588233948 0.206799288 L 62.58823395 56 58.08994675 55
1007 11 0.299778866 L 65 64 56.10988998 54
1009 51.33333588 1.398968109 G 105.3333359 107 54.99370956 54
1010 298.875 8.145128041 G 349.875 367 54.17159653 51
1011 11.88095093 0.32378709 L 64.88095093 63 55.29608917 53
1012 28.65789795 0.781002922 L 81.65789795 79 57.1165657 53
1013 6.727272034 0.183335816 L 60.72727203 53 55.16788483 54
1014 -1.22580719 -0.033406463 L 56.77419281 52 59.6593399 58
1016 14.28333282 0.389258301 L 68.28333282 64 55.52222061 54
1017 1.636363983 0.044595213 L 56.63636398 54 56.50595093 55
1018 7.837207794 0.213584478 L 62.83720779 59 56.75124359 55
1019 6.178569794 0.16838224 L 59.17856979 56 55.13274384 53
1020 4.96774292 0.135384031 L 59.96774292 59 57.5725174 55
1021 491.8493042 13.40418422 G 549.8493042 605 58.37277985 58
1023 121.4385986 3.309520485 G 177.4385986 172 57.15037537 56
1024 10.86363602 0.296062589 L 62.86363602 57 54.38271713 52

Total number of rows: 54167

Table truncated, full table size 3277 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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