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GEO accession:
Sample GSM27349
Query DataSets for GSM27349
Status
Public on Jul 27, 2004
Title
0.5C
Sample type
RNA
Source name
Rhodobacter sphaeroides 2.4.1
Organism
Cereibacter sphaeroides
Extracted molecule
total RNA
Description
Growth at 0.5% O2, 1% CO2, 98.5% N2 in the dark. Cells are collected at OD 0.18. RNA was isolated with bead beater + RNeasy kits
Submission date
Jul 23, 2004
Last update date
May 27, 2005
Contact name
Mark Gomelsky
E-mail(s)
gomelsky@uwyo.edu
Phone
307-766-3522
Organization name
University of Wyoming
Department
Molecular Biology
Lab
Gomelsky
Street address
City
Laramie
State/province
WY
ZIP/Postal code
82071
Country
USA
Platform ID
GPL162
Series (2)
GSE1515
PpsR regulon in Rhodobacter sphaeroides
GSE7004
Oxygen-dependent transcriptome profiling in R.sphaeroides 2.4.1 in the dark
Data table header descriptions
ID_REF
VALUE
relative signal of expression
ABS_CALL
Present if p<0.04 Absent if p>0.06 Marginal if 0.04 < p < 0.06
DETECTION P-VALUE
stat. significance of detection
Stat Pairs
pairs of PM-MM present on chip
Stat Pairs Used
pairs of PM-MM used in analysis
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
Stat Pairs
Stat Pairs Used
1
9.6
A
0.65838
14
14
2
54
A
0.254899
14
14
3
7
A
0.843268
20
20
4
18.6
A
0.48511
20
20
5
15.1
A
0.205732
20
20
6
1.8
A
0.966323
20
20
7
3.8
A
0.368438
20
20
8
35.1
A
0.123572
20
20
9
3.8
A
0.713416
20
19
10
3.7
A
0.58862
20
20
11
1.3
A
0.686277
20
20
12
0.6
A
0.9273
20
20
13
6
A
0.210455
20
19
14
0.6
A
0.976071
20
20
15
2.5
A
0.343687
20
19
16
0.3
A
0.897835
20
20
17
13.5
P
0.036569
20
20
18
17.7
A
0.544587
20
20
19
2.2
A
0.685419
20
19
20
0.4
A
0.99859
20
20
Total number of rows:
5355
Table truncated, full table size
143 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM27349.CEL.gz
1.1 Mb
(ftp)
(http)
CEL
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