|
| Status |
Public on Nov 10, 2008 |
| Title |
HA-SOX4 IP Replicate 2 hybridized to array 1 of 2 |
| Sample type |
genomic |
| |
|
| Channel 1 |
| Source name |
HA-SOX4/YFP LNCaP cells
|
| Organism |
Homo sapiens |
| Characteristics |
LNCaP cells stably infected with HA-SOX4-IRES-YFP
|
| Growth protocol |
LNCaP cells were grown to 95% confluency in the presence of T-medium (invitrogen)
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Chromatin IP performed as described in Odom et al., Science 303, 1378 (Feb 27, 2004)
|
| Label |
Cy3
|
| Label protocol |
performed by Nimblegen Systems, Inc
|
| |
|
| Channel 2 |
| Source name |
IP: HA-SOX4/YFP LNCaP cells
|
| Organism |
Homo sapiens |
| Characteristics |
LNCaP cells stably infected with HA-SOX4-IRES-YFP
|
| Growth protocol |
LNCaP cells were grown to 95% confluency in the presence of T-medium (invitrogen)
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Chromatin IP performed as described in Odom et al., Science 303, 1378 (Feb 27, 2004)
|
| Label |
Cy5
|
| Label protocol |
performed by Nimblegen Systems, Inc
|
| |
|
| |
| Hybridization protocol |
performed by Nimblegen Systems, Inc
|
| Scan protocol |
performed by Nimblegen Systems, Inc
|
| Description |
Biological replicate 2 of 3, hybridization 1 of 2
|
| Data processing |
Z-score normalization
|
| |
|
| Submission date |
Jun 24, 2008 |
| Last update date |
Nov 10, 2008 |
| Contact name |
Chris Scharer |
| E-mail(s) |
cdschar@emory.edu
|
| Organization name |
Emory University
|
| Department |
Microbiology and Immunology
|
| Lab |
Chris Scharer
|
| Street address |
1510 Clifton Rd, Suite 3086A
|
| City |
Atlanta |
| State/province |
GA |
| ZIP/Postal code |
30322 |
| Country |
USA |
| |
|
| Platform ID |
GPL6325 |
| Series (2) |
| GSE11874 |
Chromatin Immunoprecipitation microarray data from antiHA IP in stable LNCaP cells expressing either YFP or HA-SOX4/YFP |
| GSE11915 |
SOX4 effect on LNCaP prostate cancer cells |
|
