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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jul 23, 2019 |
| Title |
tcp14_dry_3 |
| Sample type |
SRA |
| |
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| Source name |
tcp14_dry_3
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| Organism |
Arabidopsis thaliana |
| Characteristics |
genotype: tcp14 mutant
developmental stage: boyes: 3,boyes 2
tissue: seed
treatment: no treatment
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| Treatment protocol |
no treatment
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| Growth protocol |
Media=soil Temperature=21°C Light=100 microE m2 s-1
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| Extracted molecule |
total RNA |
| Extraction protocol |
tcp14_dry_3(3ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
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| Data processing |
Genome_build: transcriptome of TAIR10
Mapping and counts of reads by locus gene (tophat2/bowtie2). If PE reads, count only consistent PE reads
Supplementary_files_format_and_content: type:count file (txt); content:gene ID,length of Gene,nb single reads,nb PE reads
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| Submission date |
Aug 31, 2018 |
| Last update date |
Jul 23, 2019 |
| Contact name |
Véronique BRUNAUD |
| E-mail(s) |
veronique.brunaud@inrae.fr
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| Organization name |
INRAE - CNRS - UPSUD
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| Lab |
IPS2
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| Street address |
rue Noetzlin
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| City |
Gif-sur-Yvette |
| ZIP/Postal code |
91190 |
| Country |
France |
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| Platform ID |
GPL19580 |
| Series (1) |
| GSE119344 |
RNA-Seq on mpk8 and tcp14 mutants on dry and imbibited seeds - Dormancy release by phosphorylation |
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| Relations |
| BioSample |
SAMN09942126 |
| SRA |
SRX4630553 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM3371580_samcount_tcp14_dry_3.txt.gz |
238.4 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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