|
| Status |
Public on Feb 01, 2010 |
| Title |
HapMap normal cell line NA19142 |
| Sample type |
genomic |
| |
|
| Source name |
HapMap normal cell line NA19142
|
| Organism |
Homo sapiens |
| Characteristics |
disease status: normal
|
| Biomaterial provider |
Coriell cell line NA19142
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA19142
|
| Treatment protocol |
cells were grown under standard conditions
|
| Growth protocol |
melanoma cell lines and short-term cultures were grown as described in Lin et al, Cancer Research (2008), 68:664-673
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was extracted from melanomas as described in Lin et al, Cancer Research (2008), 68:664-673. DNA from HapMap normal samples was obtained from Coriell cell repository
|
| Label |
biotin
|
| Label protocol |
Standard Affymetrix protocol.
|
| |
|
| Hybridization protocol |
Standard Affymetrix protocol.
|
| Scan protocol |
Standard Affymetrix protocol.
|
| Description |
hybridized to Affy SNP 6.0
|
| Data processing |
Probe-level intensities were scaled so that the sample-specific median value is 1000.
For further data processing details, please see: The Cancer Genome Atlas Research Network (2008) Nature, 455:1061-1068.
|
| |
|
| Submission date |
Jul 27, 2009 |
| Last update date |
Nov 21, 2009 |
| Contact name |
Michael Berger |
| E-mail(s) |
berger@broadinstitute.org
|
| Organization name |
The Broad Instititute
|
| Department |
Cancer Program
|
| Street address |
7 Cambridge Center
|
| City |
Cambridge |
| State/province |
MA |
| ZIP/Postal code |
02142 |
| Country |
USA |
| |
|
| Platform ID |
GPL6801 |
| Series (2) |
| GSE17359 |
Affymetrix SNP array data for melanoma short-term cultures and cell lines |
| GSE17593 |
Melanoma short-term cultures and cell lines: expression profiling and CNV analyses |
|
