|
|
GEO help: Mouse over screen elements for information. |
|
Status |
Public on Dec 01, 2021 |
Title |
eluturation-arrest-release-exp190911_large-30min_bio-rep1 |
Sample type |
SRA |
|
|
Source name |
cells
|
Organism |
Saccharomyces cerevisiae |
Characteristics |
strain: A17896 treatment: eluturation-arrest-release cell size: large time point: 30 min
|
Extracted molecule |
polyA RNA |
Extraction protocol |
cell pellets were lysed in 300 µL TRI Reagent (Zymo Research) by bead beating using a Fastprep 24 (4°C, settings: 5.0 m/s, 1 x 30 seconds). Cell debris was pelleted (13 krpm, 5 minutes) and the supernatant recovered. RNA was then extracted using the direct-zol RNA microprep kit (Zymo Research). mRNA was enriched using the NEBNext Poly(A) mRNA Magnetic Isolation Module (NEB, E7490) and NEBNext Ultra II RNA Library Prep Kit for Illumina® (NEB, #E7775) was then used to prepare libraries for paired-end (2x150 bp) Illumina sequencing
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NovaSeq 6000 |
|
|
Description |
eluturation-arrest-release-exp190911_large-30min_bio-rep1
|
Data processing |
read alignment, ChIP-seq Bowtie 1.0.1 read alignment, RNA-seq STAR-2.5.3a custom code Genome_build: custom Supplementary_files_format_and_content: bedGraph of read coverage, normalized to RPM
|
|
|
Submission date |
Feb 26, 2021 |
Last update date |
Dec 01, 2021 |
Contact name |
Georgi Kolev Marinov |
Organization name |
STANFORD UNIVERSITY
|
Department |
Genetics
|
Street address |
279 Campus Drive West, Beckman Center, B-257A/259
|
City |
Stanford |
State/province |
California |
ZIP/Postal code |
94305-5101 |
Country |
USA |
|
|
Platform ID |
GPL27812 |
Series (1) |
GSE167842 |
Transcriptional and chromatin-based partitioning mechanisms uncouple protein scaling from cell size |
|
Relations |
BioSample |
SAMN18079088 |
SRA |
SRX10182762 |
Supplementary file |
Size |
Download |
File type/resource |
GSM5113900_eluturation-arrest-release-exp190911_large-30min_bio-rep1.bigWig |
43.8 Mb |
(ftp)(http) |
BIGWIG |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |
|
|
|
|
|