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Sample GSM519 Query DataSets for GSM519
Status Public on Jul 30, 2001
Title 60' vs 0' in minimal medium +0.2% glu, II
Sample type RNA
 
Channel 1
Source name 0' in minimal medium +0.2% glu, 25 ug total RNA
Organism Escherichia coli
Extracted molecule total RNA
 
Channel 2
Source name 60' in minimal medium +0.2% glu, 25 ug total RNA
Organism Escherichia coli
Extracted molecule total RNA
 
 
Description Category: Amino Acid metabolism
Subcategory: Tryptophan
Scanning Software: ScanAlyze
Software version: 2.20
Scanning parameters:
Lot batch = cy_a_4
 
Submission date Jul 30, 2001
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL17
Series (1)
GSE7 Tryptophan metabolism response in E. coli

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 175 149 4458 6704 6526 211 178 162 5933 6095 0 0 .412 1.469 77 79 .683 .751 1.464 1.331 0 1225 225 43 60 27 44 .412
2 163 145 4430 6184 6017 191 167 152 5470 5622 0 0 .304 1.372 84 88 .736 .81 1.358 1.235 0 1120 225 42 59 48 65 .304
3 166 144 4888 6436 6272 184 164 149 5702 5851 0 0 .222 1.334 87 89 .779 .857 1.283 1.167 0 1129 225 42 59 70 87 .222
4 157 133 4635 6290 6139 169 151 137 5581 5718 0 0 .268 1.351 83 86 .755 .83 1.324 1.204 0 1129 225 42 59 92 109 .268
5 147 128 3734 5282 5141 154 141 128 4674 4802 0 0 .324 1.387 83 88 .726 .799 1.377 1.252 0 1123 225 42 59 114 131 .324
6 145 131 5003 6690 6545 154 145 132 5950 6082 0 0 .25 1.327 88 90 .764 .841 1.308 1.189 0 1137 225 41 58 136 153 .25
7 130 122 13 152 11 142 141 128 10 138 .518 0 -.379 .904 14 9 1.182 1.3 .846 .769 .571 1115 225 41 58 158 175 -.379
8 134 124 8 154 15 146 139 126 14 140 .482 0 .807 1.273 9 12 .533 .571 1.875 1.75 .506 1115 225 41 58 180 197 .807
9 142 126 20 158 16 154 142 129 15 144 .359 0 -.415 1 16 15 1.25 1.333 .8 .75 .421 1121 225 41 58 202 219 -.415
10 137 124 6 137 150 144 131 125 .751 0 .834 14 9 .653 1135 225 40 57 224 241
11 131 124 17 150 11 144 139 126 10 136 .609 0 -.766 1.125 14 10 1.545 1.7 .647 .588 .577 1143 225 40 57 246 263 -.766
12 135 124 20 159 24 145 135 123 22 145 .431 0 .138 1.081 17 15 .833 .909 1.2 1.1 .436 1143 225 40 57 268 285 .138
13 140 127 4 150 11 154 139 126 10 136 .416 0 1.322 .877 8 10 .364 .4 2.75 2.5 .404 1123 225 40 57 290 307 1.322
14 144 132 15 164 20 157 144 131 18 149 .565 0 .263 .921 18 16 .75 .833 1.333 1.2 .673 1137 225 39 56 312 329 .263
15 144 131 12 157 14 157 143 130 13 143 .482 0 .115 .914 12 12 .857 .923 1.167 1.083 .425 1148 225 39 56 334 351 .115
16 145 128 3 140 158 142 129 127 .338 0 .758 9 5 .337 1161 225 39 56 356 373
17 147 136 35 193 42 163 151 137 38 175 .832 0 .119 1.053 20 19 .833 .921 1.2 1.086 1.013 1134 225 39 56 378 395 .119
18 151 141 12 176 17 171 159 145 15 160 .466 0 .322 1.37 12 11 .706 .8 1.417 1.25 .47 1267 225 38 55 400 417 .322
19 159 139 21 179 14 184 165 150 13 163 .517 0 -.692 1.083 15 10 1.5 1.615 .667 .619 .533 1096 225 65 82 27 44 -.692
20 159 140 172 12 180 160 145 11 156 .513 0 1.171 8 12 .724 958 225 64 81 49 66

Total number of rows: 4896

Table truncated, full table size 605 Kbytes.




Supplementary data files not provided
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