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Sample GSM540 Query DataSets for GSM540
Status Public on Jul 30, 2001
Title trpEA2trpR2 vs. trpEA2, W3110 min +Trp 50ug/ml
Sample type RNA
 
Channel 1
Source name trpEA2,W3110 min +Trp 50ug/ml, 30 ug total
Organism Escherichia coli
Extracted molecule total RNA
 
Channel 2
Source name trpEA2trpR2, W3110 min +Trp 50ug/ml, 30 ug total
Organism Escherichia coli
Extracted molecule total RNA
 
 
Description Category: Amino Acid metabolism
Subcategory: Tryptophan
Scanning Software: ScanAlyze
Software version: 2.24
Scanning parameters:
Lot batch = cy_dc2
 
Submission date Jul 30, 2001
Last update date May 27, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL17
Series (1)
GSE7 Tryptophan metabolism response in E. coli

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT
1 44 34 1302 1431 1404 33 27 29 1494 1522 .936 0 .198 1.084 88 91 .927 .872 1.078 1.147 .95 1239 208 89 105 84 100
2 41 32 1087 1165 1140 39 25 27 1213 1239 .929 0 .158 1.057 85 88 .954 .896 1.049 1.116 .974 1155 208 89 105 104 120
3 39 32 816 1010 986 38 24 26 1049 1074 .951 0 .362 1.205 85 86 .828 .778 1.208 1.285 1.13 1187 208 89 105 126 142
4 32 30 826 881 859 27 22 23 914 937 .925 0 .146 1.008 83 86 .962 .904 1.04 1.106 .973 1209 208 89 105 148 164
5 32 29 818 875 852 27 23 24 906 931 .923 0 .148 1.005 86 90 .96 .902 1.042 1.108 .948 1209 208 89 105 171 187
6 32 31 850 1010 986 25 24 26 1049 1074 .909 0 .303 1.176 85 92 .862 .81 1.16 1.234 1.026 1187 208 89 105 193 209
7 31 30 2 24 1 24 23 24 1 26 .013 0 -.911 .571 19 14 2 1.88 .5 .532 .008 1191 208 89 105 215 231
8 31 30 24 25 24 26 0 26 .039 0 .75 13 12 .029 1189 208 89 105 237 253
9 32 31 4 28 2 27 26 28 2 30 .055 0 -.911 .759 21 17 2 1.88 .5 .532 .04 1185 208 89 105 259 275
10 33 31 1 28 29 28 30 0 30 .097 0 .9 17 12 .076 1187 208 89 105 281 297
11 37 33 32 34 32 34 0 34 .062 0 .714 12 9 .046 1187 208 89 105 303 319
12 49 33 1 32 42 33 35 -1 34 .232 0 .5 18 12 .179 1187 208 89 105 325 341
13 44 32 7 31 3 38 28 30 3 33 .867 0 -1.133 .5 18 7 2.333 2.193 .429 .456 .398 1187 208 89 105 347 363
14 39 31 12 31 5 32 26 28 5 33 .597 0 -1.174 .59 24 13 2.4 2.256 .417 .443 .298 1209 208 89 105 369 385
15 39 30 3 25 31 26 28 -1 27 .073 0 .714 21 9 .051 1209 208 89 105 392 408
16 33 30 3 28 2 29 26 28 2 30 .521 0 -.496 .75 14 12 1.5 1.41 .667 .709 .152 1187 208 89 105 414 430
17 32 30 27 1 28 26 28 1 29 -.02 0 .714 15 11 -.013 1187 208 89 105 436 452
18 32 30 1 24 26 25 27 -1 26 .028 0 .667 19 9 .019 1305 208 89 105 458 474
19 35 29 2 24 29 25 27 -1 26 .017 0 .636 24 10 .012 1181 208 112 128 82 98
20 39 29 3 23 32 23 24 0 24 .103 0 .444 25 13 .056 1051 208 112 128 104 120

Total number of rows: 4896

Table truncated, full table size 541 Kbytes.




Supplementary data files not provided
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