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Sample GSM575207 Query DataSets for GSM575207
Status Public on Sep 01, 2010
Title sma-2;fem-1 oocyte D8 vs fem-1 oocyte D8 array #4 SL2.6.09
Sample type RNA
 
Channel 1
Source name sma-2;fem-1 day 8
Organism Caenorhabditis elegans
Characteristics developmental stage: Day 8 oocytes
genotype: sma-2(e502);fem-1(hc17)
Biomaterial provider Shijing Luo, Murphy Lab, Lewis-Sigler Institute for Integrative Genomics
Extracted molecule total RNA
Extraction protocol Extraction method : Qiagen Rneasy Kit
Label Cy3
Label protocol Type of label : Cy3
reference URL : http://www.chem.agilent.com/scripts/LiteraturePDF.asp?iWHID=32636
 
Channel 2
Source name fem-1 day 8
Organism Caenorhabditis elegans
Characteristics genotype: fem-1(hc17)
developmental stage: Day 8 oocytes
Biomaterial provider Shijing Luo, Murphy Lab, Lewis-Sigler Institute for Integrative Genomics
Extracted molecule total RNA
Extraction protocol Extraction method : Qiagen Rneasy Kit
Label Cy5
Label protocol Type of label : Cy5
reference URL : http://www.chem.agilent.com/scripts/LiteraturePDF.asp?iWHID=32636
 
 
Hybridization protocol reference URL : http://www.chem.agilent.com/scripts/LiteraturePDF.asp?iWHID=48835
Scan protocol Pixel Size : 5
Scan Date : 2009-02-06
Scan Time : 11:06:18
Scanner Make : Agilent Technologies Scanner
Scanner Model : G2505B
Scanning software : ChipScan
Scanning software version : A.7.0.1
Description sma-2(e502);fem-1(hc17) oocyte day8 #7 1.19.09 collection Cy3 vs. fem-1(hc17) oocyte day8 #9 10.22.08 collection Cy5, array #4, SL scanned 2.6.09
Data processing Extraction Software : Agilent Feature Extractor
Extraction Software Version : 9.5.3.1
Datafile type : Agilent result file
 
Submission date Aug 05, 2010
Last update date Aug 06, 2010
Contact name Shijing Luo
E-mail(s) shijingluo@gmail.com
Organization name Princeton University
Street address 160 Carl Icahn Lab, Princeton University
City Princeton
State/province NJ
ZIP/Postal code 08544
Country USA
 
Platform ID GPL7727
Series (2)
GSE23446 Reproductive aging: sma-2;fem-1 day 8 oocyte vs fem-1 day 8 oocyte
GSE23509 TGF-beta Sma/Mab signaling regulates a set of genes in oocytes associated with reproductive aging and another set in L4 associated with body size growth

Data table header descriptions
ID_REF Uniquely identifies feature/spot in array layout.
VALUE log(base 2) (G_PROCESSED_SIGNAL/R_PROCESSED_SIGNAL)
R_PROCESSED_SIGNAL The propagated feature signal in the red channel, used for computation of log ratio
G_PROCESSED_SIGNAL The propagated feature signal in the green channel, used for computation of log ratio
R_MEAN_SIGNAL Mean foreground intensity Ch 2.
G_MEAN_SIGNAL Mean foreground intensity Ch 1.

Data table
ID_REF VALUE R_PROCESSED_SIGNAL G_PROCESSED_SIGNAL R_MEAN_SIGNAL G_MEAN_SIGNAL
1 -0.331 8296.844 6593.806 3002.333 2123.158
2 0 10.46511 5.532071 37.52459 28.42623
3 0 10.49918 5.588121 35.29032 32.58065
4 0 10.52999 5.99069 34.42623 33.55738
5 0 10.55747 5.688871 37.44068 30.98305
6 0 10.58078 5.73479 35.375 30.5
7 0 10.60056 5.775044 35.09231 29.38462
8 0 10.6179 5.813146 35.01613 31.58065
9 0 10.63166 5.847096 33.5 30.54839
10 0 10.64232 5.877631 39.98361 32.55738
11 0 10.65012 5.904289 37.53333 30.1
12 0.172 5060.972 5701.737 1808.576 1701.237
13 -0.056 71.87239 69.14317 65.58065 52.29032
14 -0.545 40.64509 27.86694 54.68852 40.29508
15 0.987 10.65396 21.11426 42.95313 38.375
16 0 10.64853 10.61867 37.4918 35.39344
17 -1.978 2490.381 632.3428 911.5938 215.1875
18 0.108 369.071 397.7916 169.6875 147.3125
19 0.032 1947.691 1990.819 723.0656 606.8033
20 0 10.60669 6.533978 37.1875 34.48438

Total number of rows: 44381

Table truncated, full table size 2023 Kbytes.




Supplementary file Size Download File type/resource
GSM575207.txt.gz 13.3 Mb (ftp)(http) TXT
Processed data included within Sample table
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