NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM575209 Query DataSets for GSM575209
Status Public on Sep 01, 2010
Title sma-2;fem-1 oocyte D8 vs fem-1 oocyte D8 array #6 SL2.6.09
Sample type RNA
 
Channel 1
Source name sma-2;fem-1 day 8
Organism Caenorhabditis elegans
Characteristics developmental stage: Day 8 oocytes
genotype: sma-2(e502);fem-1(hc17)
Biomaterial provider Shijing Luo, Murphy Lab, Lewis-Sigler Institute for Integrative Genomics
Extracted molecule total RNA
Extraction protocol Extraction method : Qiagen Rneasy Kit
Label Cy3
Label protocol Type of label : Cy3
reference URL : http://www.chem.agilent.com/scripts/LiteraturePDF.asp?iWHID=32636
 
Channel 2
Source name fem-1 day 8
Organism Caenorhabditis elegans
Characteristics genotype: fem-1(hc17)
developmental stage: Day 8 oocytes
Biomaterial provider Shijing Luo, Murphy Lab, Lewis-Sigler Institute for Integrative Genomics
Extracted molecule total RNA
Extraction protocol Extraction method : Qiagen Rneasy Kit
Label Cy5
Label protocol Type of label : Cy5
reference URL : http://www.chem.agilent.com/scripts/LiteraturePDF.asp?iWHID=32636
 
 
Hybridization protocol reference URL : http://www.chem.agilent.com/scripts/LiteraturePDF.asp?iWHID=48835
Scan protocol Pixel Size : 5
Scan Date : 2009-02-06
Scan Time : 11:14:27
Scanner Make : Agilent Technologies Scanner
Scanner Model : G2505B
Scanning software : ChipScan
Scanning software version : A.7.0.1
Description sma-2(e502);fem-1(hc17) oocyte day8 #7 1.19.09 collection Cy3 vs. fem-1(hc17) oocyte day8 #4 9.6.08 collection Cy5, array #6, SL scanned 2.6.09
Data processing Extraction Software : Agilent Feature Extractor
Extraction Software Version : 9.5.3.1
Datafile type : Agilent result file
 
Submission date Aug 05, 2010
Last update date Aug 06, 2010
Contact name Shijing Luo
E-mail(s) shijingluo@gmail.com
Organization name Princeton University
Street address 160 Carl Icahn Lab, Princeton University
City Princeton
State/province NJ
ZIP/Postal code 08544
Country USA
 
Platform ID GPL7727
Series (2)
GSE23446 Reproductive aging: sma-2;fem-1 day 8 oocyte vs fem-1 day 8 oocyte
GSE23509 TGF-beta Sma/Mab signaling regulates a set of genes in oocytes associated with reproductive aging and another set in L4 associated with body size growth

Data table header descriptions
ID_REF Uniquely identifies feature/spot in array layout.
VALUE log(base 2) (G_PROCESSED_SIGNAL/R_PROCESSED_SIGNAL)
R_PROCESSED_SIGNAL The propagated feature signal in the red channel, used for computation of log ratio
G_PROCESSED_SIGNAL The propagated feature signal in the green channel, used for computation of log ratio
R_MEAN_SIGNAL Mean foreground intensity Ch 2.
G_MEAN_SIGNAL Mean foreground intensity Ch 1.

Data table
ID_REF VALUE R_PROCESSED_SIGNAL G_PROCESSED_SIGNAL R_MEAN_SIGNAL G_MEAN_SIGNAL
1 -0.279 4261.44 3511.832 3511.271 3858.61
2 0 4.449678 1.714531 36.60606 30.74242
3 0 4.480614 1.727945 36.51724 30.86207
4 0 4.514044 1.743202 37.54839 29.79032
5 0 4.551565 1.761438 36.90164 31.90164
6 0 4.590067 1.780351 36.60317 31.68254
7 0 4.630059 1.800768 35.45902 31.18033
8 0 4.674277 1.824241 36.5 30.87097
9 0 4.717392 1.846772 38.47368 27.38596
10 0 4.765066 1.873307 33.58333 32.18333
11 0 4.81282 1.900102 37.57813 30.32813
12 -0.174 3433.77 3044.371 2582.1 2961.233
13 0.217 45.50016 52.88226 73.96923 82.69231
14 -0.951 45.01009 23.27872 73.16923 54.27692
15 -1.002 15.52151 7.752169 51.59322 39.66102
16 0 5.081378 2.263777 37.79032 34.56452
17 -1.729 1241.166 374.4861 910.6875 365.0781
18 0.048 486.8871 503.4053 377.8226 472.0484
19 -0.34 2657.946 2099.499 1863.077 1835.369
20 0.036 123.4989 126.6439 123.7903 139.3871

Total number of rows: 44381

Table truncated, full table size 2031 Kbytes.




Supplementary file Size Download File type/resource
GSM575209.txt.gz 13.4 Mb (ftp)(http) TXT
Processed data included within Sample table
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap