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Sample GSM575211 Query DataSets for GSM575211
Status Public on Sep 01, 2010
Title sma-2;fem-1 oocyte D8 vs fem-1 oocyte D8 array #9 SL2.6.09
Sample type RNA
 
Channel 1
Source name sma-2;fem-1 day 8
Organism Caenorhabditis elegans
Characteristics developmental stage: Day 8 oocytes
genotype: sma-2(e502);fem-1(hc17)
Biomaterial provider Shijing Luo, Murphy Lab, Lewis-Sigler Institute for Integrative Genomics
Extracted molecule total RNA
Extraction protocol Extraction method : Qiagen Rneasy Kit
Label Cy3
Label protocol Type of label : Cy3
reference URL : http://www.chem.agilent.com/scripts/LiteraturePDF.asp?iWHID=32636
 
Channel 2
Source name fem-1 day 8
Organism Caenorhabditis elegans
Characteristics genotype: fem-1(hc17)
developmental stage: Day 8 oocytes
Biomaterial provider Shijing Luo, Murphy Lab, Lewis-Sigler Institute for Integrative Genomics
Extracted molecule total RNA
Extraction protocol Extraction method : Qiagen Rneasy Kit
Label Cy5
Label protocol Type of label : Cy5
reference URL : http://www.chem.agilent.com/scripts/LiteraturePDF.asp?iWHID=32636
 
 
Hybridization protocol reference URL : http://www.chem.agilent.com/scripts/LiteraturePDF.asp?iWHID=48835
Scan protocol Pixel Size : 5
Scan Date : 2009-02-06
Scan Time : 13:45:23
Scanner Make : Agilent Technologies Scanner
Scanner Model : G2505B
Scanning software : ChipScan
Scanning software version : A.7.0.1
Description sma-2(e502);fem-1(hc17) oocyte day8 #4 11.12.08 collection Cy3 vs. fem-1(hc17) oocyte day8 #2 8.17.08 collection Cy5, array #9, SL scanned 2.6.09
Data processing Extraction Software : Agilent Feature Extractor
Extraction Software Version : 9.5.3.1
Datafile type : Agilent result file
 
Submission date Aug 05, 2010
Last update date Aug 06, 2010
Contact name Shijing Luo
E-mail(s) shijingluo@gmail.com
Organization name Princeton University
Street address 160 Carl Icahn Lab, Princeton University
City Princeton
State/province NJ
ZIP/Postal code 08544
Country USA
 
Platform ID GPL7727
Series (2)
GSE23446 Reproductive aging: sma-2;fem-1 day 8 oocyte vs fem-1 day 8 oocyte
GSE23509 TGF-beta Sma/Mab signaling regulates a set of genes in oocytes associated with reproductive aging and another set in L4 associated with body size growth

Data table header descriptions
ID_REF Uniquely identifies feature/spot in array layout.
VALUE log(base 2) (G_PROCESSED_SIGNAL/R_PROCESSED_SIGNAL)
R_PROCESSED_SIGNAL The propagated feature signal in the red channel, used for computation of log ratio
G_PROCESSED_SIGNAL The propagated feature signal in the green channel, used for computation of log ratio
R_MEAN_SIGNAL Mean foreground intensity Ch 2.
G_MEAN_SIGNAL Mean foreground intensity Ch 1.

Data table
ID_REF VALUE R_PROCESSED_SIGNAL G_PROCESSED_SIGNAL R_MEAN_SIGNAL G_MEAN_SIGNAL
1 -0.184 6243.317 5494.568 2591.125 2331.203
2 0 9.9861 4.728024 35.03333 33.25
3 0 9.975892 4.739354 39.33846 33.32308
4 0 9.967135 4.750465 36.9 36.16667
5 0 9.962195 4.763241 37.53333 32.3
6 0 9.95811 4.776145 45.57627 37.20339
7 0 9.956734 4.789448 36.96875 33.98438
8 0 9.958659 4.804655 43.39063 32.57813
9 0 9.961794 4.81988 42.62903 36.14516
10 0 9.96759 4.835839 40.10938 35.09375
11 0 9.973121 4.851221 37.49206 34.03175
12 -0.453 5932.488 4335.095 2469.589 1791.5
13 0.836 37.60526 67.12426 60.15625 62.78125
14 -1.819 53.45044 15.14707 66.65079 41.80952
15 1.716 10.01473 32.8961 48.26667 48.93333
16 0.158 10.02738 11.18959 44.29688 40.25
17 -0.905 1472.367 786.254 643.1311 348.623
18 -0.123 369.8571 339.5822 195.0164 170.4426
19 -0.147 3805.772 3438.245 1586.281 1393.656
20 1.321 113.5715 283.7988 90.96774 147.5645

Total number of rows: 44381

Table truncated, full table size 2028 Kbytes.




Supplementary file Size Download File type/resource
GSM575211.txt.gz 13.4 Mb (ftp)(http) TXT
Processed data included within Sample table
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