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Sample GSM575215 Query DataSets for GSM575215
Status Public on Sep 01, 2010
Title sma-4(e729) L4 v N2 L4 #1 WS 4.10.7
Sample type RNA
 
Channel 1
Source name N2
Organism Caenorhabditis elegans
Characteristics developmental stage: L4
genotype: N2
Biomaterial provider Wendy Shaw, Murphy Lab, Lewis Sigler Institute for comparative genomics
Extracted molecule total RNA
Extraction protocol Extraction method : Qiagen Rneasy Kit
Label Cy3
Label protocol Type of label : Cy3
reference URL : http://www.chem.agilent.com/scripts/LiteraturePDF.asp?iWHID=32636
 
Channel 2
Source name sma-4
Organism Caenorhabditis elegans
Characteristics genotype: sma-4(e729)
developmental stage: L4
Biomaterial provider Wendy Shaw, Murphy Lab, Lewis Sigler Institute for comparative genomics
Extracted molecule total RNA
Extraction protocol Extraction method : Qiagen Rneasy Kit
Label Cy5
Label protocol Type of label : Cy5
reference URL : http://www.chem.agilent.com/scripts/LiteraturePDF.asp?iWHID=32636
 
 
Hybridization protocol reference URL : http://www.chem.agilent.com/scripts/LiteraturePDF.asp?iWHID=48835
Scan protocol Pixel Size : 5
Scan Date : 2007-04-10
Scan Time : 10:56:08
Scanner Make : Agilent Technologies Scanner
Scanner Model : G2505B
Scanning software : ChipScan
Scanning software version : A.7.0.1
Description sma-4(e729) L4 v N2 L4 #1 WS 4.10.7-repeat L4 collection 4.10.07 rehyb of samples from 4.6.
Data processing Extraction Software : Agilent Feature Extractor
Extraction Software Version : 9.1.3.1
Datafile type : Agilent result file
 
Submission date Aug 05, 2010
Last update date Aug 06, 2010
Contact name Shijing Luo
E-mail(s) shijingluo@gmail.com
Organization name Princeton University
Street address 160 Carl Icahn Lab, Princeton University
City Princeton
State/province NJ
ZIP/Postal code 08544
Country USA
 
Platform ID GPL7727
Series (2)
GSE23448 Body size regulation and TGF-beta Sma/Mab pathway: sma L4 vs N2 L4
GSE23509 TGF-beta Sma/Mab signaling regulates a set of genes in oocytes associated with reproductive aging and another set in L4 associated with body size growth

Data table header descriptions
ID_REF Uniquely identifies feature/spot in array layout.
VALUE log(base 2) (R_PROCESSED_SIGNAL/G_PROCESSED_SIGNAL)
R_PROCESSED_SIGNAL The propagated feature signal in the red channel, used for computation of log ratio
G_PROCESSED_SIGNAL The propagated feature signal in the green channel, used for computation of log ratio
R_MEAN_SIGNAL Mean foreground intensity Ch 2.
G_MEAN_SIGNAL Mean foreground intensity Ch 1.

Data table
ID_REF VALUE R_PROCESSED_SIGNAL G_PROCESSED_SIGNAL R_MEAN_SIGNAL G_MEAN_SIGNAL
1 -.014 11224.35 11333.98 2134.441 1604.814
2 0 11.6234 11.58249 26.58209 21.56716
3 0 11.5982 11.56728 23.91803 21.2459
4 0 11.57457 11.55283 25.21875 23.21875
5 0 11.55329 11.53966 26.23881 20.95522
6 0 11.53357 11.52728 24.69492 20.9661
7 0 11.51561 11.51583 26.5082 21.04918
8 0 11.49942 11.50534 23.65574 22.65574
9 0 11.48436 11.4954 26.07576 23.12121
10 0 11.47107 11.48646 26.82353 22.88235
11 0 11.45895 11.47815 27.27869 22.7377
12 -.084 999.341 1059.321 217.6774 172.4355
13 -.445 24.39808 33.20556 31.36508 27.60317
14 1.748 39.03037 11.61788 34.20635 24.57143
15 -.344 37.96249 48.18181 34.03077 29.75385
16 .873 20.96271 11.44607 30.81356 24.23729
17 .71 6464.708 3951.223 1266.594 582.1719
18 .681 112.9735 70.44605 48.54688 32.9375
19 -.343 388.6957 493.1511 101.5156 92.8125
20 -.696 17.48265 28.3281 30.30645 26.98387

Total number of rows: 44381

Table truncated, full table size 1985 Kbytes.




Supplementary file Size Download File type/resource
GSM575215.txt.gz 11.4 Mb (ftp)(http) TXT
Processed data included within Sample table

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