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Sample GSM6338183 Query DataSets for GSM6338183
Status Public on Feb 08, 2023
Title WT_N2_1
Sample type SRA
 
Source name WT_N2_1
Organism Arabidopsis thaliana
Characteristics genotype: wild type (WT)
developmental stage: boyes: 5.10
tissue: rosette
Treatment protocol N2-abiotic stress-nitrogen-nitrate nutritionquantity 2mM
Growth protocol Media=poting soil,Hygrometry 50%,24 day and 19°C night, 100 µmol.m-2.s-1 Light
Extracted molecule total RNA
Extraction protocol WT_N2_1(100mg)
rna_selection:selection polyA(3'seq), single, stranded:yes, Protocol:PT_QuantSEQ-3_prime_mRNA_simple_indexage_B_17-11-21.docx
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
 
Data processing Genome_build: genome of Ath TAIR10
genome mapping and counts of reads by gene locus are done with Tophat2/HTSeqcount; exact multihits are removed and count only consistent PE reads (in PE case).
Supplementary_files_format_and_content: type:count file (txt); content:GeneID,counts
 
Submission date Jul 13, 2022
Last update date Feb 08, 2023
Contact name Véronique BRUNAUD
E-mail(s) veronique.brunaud@inrae.fr
Organization name INRA - CNRS - UPSUD
Lab IPS2
Street address rue Noetzlin
City Gif-sur-Yvette
ZIP/Postal code 91190
Country France
 
Platform ID GPL19580
Series (1)
GSE208151 Protein farnesylation is involved in the adaptation of Arabidopsis to nitrogen starvation
Relations
BioSample SAMN29720031
SRA SRX16203553

Supplementary file Size Download File type/resource
GSM6338183_htseqcount_WT_N2_1.txt.gz 114.9 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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