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| Status |
Public on Feb 08, 2023 |
| Title |
era_N0_2 |
| Sample type |
SRA |
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| Source name |
era_N0_2
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| Organism |
Arabidopsis thaliana |
| Characteristics |
genotype: era1 - mutant=knock-out,insertional mutagen,T-DNA-AT5G66470
developmental stage: boyes: 5.10
tissue: rosette
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| Treatment protocol |
N0-abiotic stress-nitrogen-nitrate nutritionquantity 0mM
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| Growth protocol |
Media=poting soil,Hygrometry 50%,24 day and 19°C night, 100 µmol.m-2.s-1 Light
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| Extracted molecule |
total RNA |
| Extraction protocol |
era_N0_2(100mg)
rna_selection:selection polyA(3'seq), single, stranded:yes, Protocol:PT_QuantSEQ-3_prime_mRNA_simple_indexage_B_17-11-21.docx
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
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| Data processing |
Genome_build: genome of Ath TAIR10
genome mapping and counts of reads by gene locus are done with Tophat2/HTSeqcount; exact multihits are removed and count only consistent PE reads (in PE case).
Supplementary_files_format_and_content: type:count file (txt); content:GeneID,counts
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| Submission date |
Jul 13, 2022 |
| Last update date |
Feb 08, 2023 |
| Contact name |
Véronique BRUNAUD |
| E-mail(s) |
veronique.brunaud@inrae.fr
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| Organization name |
INRA - CNRS - UPSUD
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| Lab |
IPS2
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| Street address |
rue Noetzlin
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| City |
Gif-sur-Yvette |
| ZIP/Postal code |
91190 |
| Country |
France |
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| Platform ID |
GPL19580 |
| Series (1) |
| GSE208151 |
Protein farnesylation is involved in the adaptation of Arabidopsis to nitrogen starvation |
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| Relations |
| BioSample |
SAMN29720027 |
| SRA |
SRX16203557 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM6338187_htseqcount_era_N0_2.txt.gz |
116.5 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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