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Sample GSM81020

Query DataSets for GSM81020

Status

Public on Nov 01, 2005

Title

E. coli K12 delta ydgG

Sample type

RNA

Source name

Channel 1

Organism

Escherichia coli

Characteristics

RNA extracted from biofilm cells of E. coli K12 wild type after 24 hours of growth in LB supplemented with 0.2% glucose

Extracted molecule

total RNA

Label

E. coli delta ydgG

Description

RNA extracted from biofilm cells of E. coli K12 wild type after 24 hours of growth in LB supplemented with 0.2% glucose.

Data processing

Affymetrix protocol

Submission date

Oct 29, 2005

Last update date

Oct 31, 2005

Contact name

Thomas K Wood

E-mail(s)

twood@engr.uconn.edu

Organization name

University of Connecticut

Department

Chemical Engineering

Street address

191 Auditorium Rd

City

Storrs

State/province

CT

ZIP/Postal code

06269

Country

USA

Platform ID

Series (1)

Differential gene expression of ydgG mutant

Data table header descriptions
ID_REF
MH 3_15_05-3 BW del ydgG Biof_Stat Pairs	Number of perfect match probes for the probeset
MH 3_15_05-3 BW del ydgG Biof_Stat Pairs Used	Number of the mismatch probes for the probeset
VALUE	Signal intensity accepted from the probeset
ABS_CALL	Probeset signal: absent or present
DETECTION P-VALUE	Probeset signal: p-value (shows the coherency of the results)

Data table
ID_REF	MH 3_15_05-3 BW del ydgG Biof_Stat Pairs	MH 3_15_05-3 BW del ydgG Biof_Stat Pairs Used	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-BioB-5_at	2	2	1008.1	A	0.125
AFFX-BioC-3_at	1	1	127.6	A	0.25
AFFX-CreX-5_at	20	20	18	A	0.52976
AFFX-CreX-3_at	20	20	7	A	0.995983
AFFX-DapX-5_at	20	20	9416.7	P	0.000044
AFFX-DapX-M_at	20	20	6896.8	P	0.00007
AFFX-DapX-3_at	20	20	5072.5	P	0.000044
AFFX-LysX-5_at	20	20	751.6	P	0.000044
AFFX-LysX-M_at	20	20	492.2	P	0.000044
AFFX-LysX-3_at	20	20	896.1	P	0.000052
AFFX-PheX-5_at	20	20	1754.1	P	0.000052
AFFX-PheX-M_at	20	20	1394.9	P	0.00006
AFFX-PheX-3_at	20	20	892.2	P	0.000169
AFFX-ThrX-5_at	20	20	3447	P	0.000044
AFFX-ThrX-M_at	20	20	3045.8	P	0.00006
AFFX-ThrX-3_at	20	20	2916.4	P	0.00006
AFFX-TrpnX-5_at	20	20	8.2	A	0.724854
AFFX-TrpnX-M_at	20	20	49.4	A	0.083592
AFFX-TrpnX-3_at	20	20	2.6	A	0.904352
AFFX-HXB2_5_at	20	20	1	A	0.99156

Total number of rows: 7312

Table truncated, full table size 302 Kbytes.

Supplementary data files not provided

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