CBlastSetupTestFixture Class Reference

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Collaboration diagram for CBlastSetupTestFixture:

Public Member Functions
	CBlastSetupTestFixture ()
	~CBlastSetupTestFixture ()

Static Public Member Functions
static void	s_TestSingleSubjectNuclMask (BLAST_SequenceBlk const *seqblk)
static void	s_ValidateProtein130912 (CRef< IQueryFactory > query_factory, const CBlastOptions &opts, string prefix)
	Auxiliary function to validate that the query sequence data hasn't been modified (filtering can change the actual sequence data...) More...
static BlastScoringOptions *	s_GetScoringOpts (const CBlastOptions &opts)
static BlastEffectiveLengthsOptions *	s_GetEffLenOpts (const CBlastOptions &opts)

Public Attributes
CTestObjMgr *	m_Om

Detailed Description

Definition at line 69 of file blastsetup_unit_test.cpp.

Constructor & Destructor Documentation

CBlastSetupTestFixture()

CBlastSetupTestFixture::CBlastSetupTestFixture ( )

inline

Definition at line 74 of file blastsetup_unit_test.cpp.

References CTestObjMgr::Instance().

~CBlastSetupTestFixture()

CBlastSetupTestFixture::~CBlastSetupTestFixture ( )

inline

Definition at line 78 of file blastsetup_unit_test.cpp.

References NULL.

Member Function Documentation

s_GetEffLenOpts()

static BlastEffectiveLengthsOptions* CBlastSetupTestFixture::s_GetEffLenOpts ( const CBlastOptions &  opts )

inlinestatic

Definition at line 134 of file blastsetup_unit_test.cpp.

References CBlastOptions::GetEffLenOpts().

s_GetScoringOpts()

static BlastScoringOptions* CBlastSetupTestFixture::s_GetScoringOpts ( const CBlastOptions &  opts )

inlinestatic

Definition at line 129 of file blastsetup_unit_test.cpp.

References CBlastOptions::GetScoringOpts().

s_TestSingleSubjectNuclMask()

static void CBlastSetupTestFixture::s_TestSingleSubjectNuclMask ( BLAST_SequenceBlk const *  seqblk )

inlinestatic

Definition at line 84 of file blastsetup_unit_test.cpp.

References FALSE, BLAST_SequenceBlk::lcase_mask, BLAST_SequenceBlk::lcase_mask_allocated, NULL, BLAST_SequenceBlk::num_seq_ranges, and BLAST_SequenceBlk::seq_ranges.

s_ValidateProtein130912()

static void CBlastSetupTestFixture::s_ValidateProtein130912 ( CRef< IQueryFactory >  query_factory, const CBlastOptions &  opts, string  prefix  )

inlinestatic

Auxiliary function to validate that the query sequence data hasn't been modified (filtering can change the actual sequence data...)

Definition at line 93 of file blastsetup_unit_test.cpp.

References ILocalQueryData::GetSequenceBlk(), i, BLAST_SequenceBlk::length, IQueryFactory::MakeLocalQueryData(), prefix, and BLAST_SequenceBlk::sequence.

Member Data Documentation

m_Om

CTestObjMgr* CBlastSetupTestFixture::m_Om

Definition at line 72 of file blastsetup_unit_test.cpp.

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The documentation for this class was generated from the following file:

• src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp