pcregrep.c File Reference

#include <ctype.h>
#include <locale.h>
#include <stdio.h>
#include <string.h>
#include <stdlib.h>
#include <errno.h>
#include <sys/types.h>
#include <sys/stat.h>
#include "pcre.h"

Include dependency graph for pcregrep.c:

Go to the source code of this file.

Go to the SVN repository for this file.

Classes
struct	omstr
struct	omdatastr
struct	fnstr
struct	fndatastr
struct	patstr
struct	patdatastr
struct	option_item

Macros
#define	FALSE   0
#define	TRUE   1
#define	OFFSET_SIZE   99
#define	MAXPATLEN   8192
#define	PATBUFSIZE   (MAXPATLEN + 10) /* Allows for prefix+suffix */
#define	PO_WORD_MATCH   0x0001
#define	PO_LINE_MATCH   0x0002
#define	PO_FIXED_STRINGS   0x0004
#define	FWRITE(a, b, c, d)   if (fwrite(a,b,c,d)) {}
#define	N_COLOUR   (-1)
#define	N_EXCLUDE   (-2)
#define	N_EXCLUDE_DIR   (-3)
#define	N_HELP   (-4)
#define	N_INCLUDE   (-5)
#define	N_INCLUDE_DIR   (-6)
#define	N_LABEL   (-7)
#define	N_LOCALE   (-8)
#define	N_NULL   (-9)
#define	N_LOFFSETS   (-10)
#define	N_FOFFSETS   (-11)
#define	N_LBUFFER   (-12)
#define	N_M_LIMIT   (-13)
#define	N_M_LIMIT_REC   (-14)
#define	N_BUFSIZE   (-15)
#define	N_NOJIT   (-16)
#define	N_FILE_LIST   (-17)
#define	N_BINARY_FILES   (-18)
#define	N_EXCLUDE_FROM   (-19)
#define	N_INCLUDE_FROM   (-20)
#define	N_OM_SEPARATOR   (-21)
#define	FILESEP   0

Typedefs
typedef int	BOOL
typedef struct omstr	omstr
typedef struct omdatastr	omdatastr
typedef struct fnstr	fnstr
typedef struct fndatastr	fndatastr
typedef struct patstr	patstr
typedef struct patdatastr	patdatastr
typedef struct option_item	option_item
typedef void	directory_type

Enumerations
enum	{   FN_NONE , FN_DEFAULT , FN_MATCH_ONLY , FN_NOMATCH_ONLY ,   FN_FORCE }
enum	{ FR_PLAIN , FR_LIBZ , FR_LIBBZ2 }
enum	{ dee_READ , dee_SKIP , dee_RECURSE }
enum	{ DEE_READ , DEE_SKIP }
enum	{   EL_LF , EL_CR , EL_CRLF , EL_ANY ,   EL_ANYCRLF }
enum	{ BIN_BINARY , BIN_NOMATCH , BIN_TEXT }
enum	{   OP_NODATA , OP_STRING , OP_OP_STRING , OP_NUMBER ,   OP_LONGNUMBER , OP_OP_NUMBER , OP_OP_NUMBERS , OP_PATLIST ,   OP_FILELIST , OP_BINFILES }

Functions
static void	pcregrep_exit (int rc)
static patstr *	add_pattern (char *s, patstr *after)
static void	free_pattern_chain (patstr *pc)
static void	free_file_chain (fnstr *fn)
int	isdirectory (char *filename)
directory_type *	opendirectory (char *filename)
char *	readdirectory (directory_type *dir)
void	closedirectory (directory_type *dir)
int	isregfile (char *filename)
static BOOL	is_stdout_tty (void)
static BOOL	is_file_tty (FILE *f)
char *	strerror (int n)
static int	usage (int rc)
static void	help (void)
static BOOL	test_incexc (char *path, patstr *ip, patstr *ep)
static long int	decode_number (char *option_data, option_item *op, BOOL longop)
static omstr *	add_number (int n, omstr *after)
static unsigned int	read_one_line (char *buffer, int length, FILE *f)
static char *	end_of_line (char *p, char *endptr, int *lenptr)
static char *	previous_line (char *p, char *startptr)
static void	do_after_lines (unsigned long int lastmatchnumber, char *lastmatchrestart, char *endptr, char *printname)
static BOOL	match_patterns (char *matchptr, size_t length, unsigned int options, int startoffset, int *offsets, int *mrc)
static int	pcregrep (void *handle, int frtype, char *filename, char *printname)
static int	grep_or_recurse (char *pathname, BOOL dir_recurse, BOOL only_one_at_top)
static int	handle_option (int letter, int options)
static char *	ordin (int n)
static BOOL	compile_pattern (patstr *p, int options, int popts, int fromfile, const char *fromtext, int count)
static BOOL	read_pattern_file (char *name, patstr **patptr, patstr **patlastptr, int popts)
int	main (int argc, char **argv)

Variables
static int	endlinetype
static char *	colour_string = (char *)"1;31"
static char *	colour_option = NULL
static char *	dee_option = NULL
static char *	DEE_option = NULL
static char *	locale = NULL
static char *	main_buffer = NULL
static char *	newline = NULL
static char *	om_separator = (char *)""
static char *	stdin_name = (char *)"(standard input)"
static const unsigned char *	pcretables = NULL
static int	after_context = 0
static int	before_context = 0
static int	binary_files = BIN_BINARY
static int	both_context = 0
static int	bufthird = PCREGREP_BUFSIZE
static int	bufsize = 3*PCREGREP_BUFSIZE
static int	dee_action = dee_READ
static int	DEE_action = DEE_READ
static int	error_count = 0
static int	filenames = FN_DEFAULT
static int	pcre_options = 0
static int	process_options = 0
static int	study_options = 0
static unsigned long int	match_limit = 0
static unsigned long int	match_limit_recursion = 0
static BOOL	count_only = 0
static BOOL	do_colour = 0
static BOOL	file_offsets = 0
static BOOL	hyphenpending = 0
static BOOL	invert = 0
static BOOL	line_buffered = 0
static BOOL	line_offsets = 0
static BOOL	multiline = 0
static BOOL	number = 0
static BOOL	omit_zero_count = 0
static BOOL	resource_error = 0
static BOOL	quiet = 0
static BOOL	show_only_matching = 0
static BOOL	silent = 0
static BOOL	utf8 = 0
static omstr *	only_matching = NULL
static omstr *	only_matching_last = NULL
static omdatastr	only_matching_data = { &only_matching, &only_matching_last }
static fnstr *	exclude_from = NULL
static fnstr *	exclude_from_last = NULL
static fnstr *	include_from = NULL
static fnstr *	include_from_last = NULL
static fnstr *	file_lists = NULL
static fnstr *	file_lists_last = NULL
static fnstr *	pattern_files = NULL
static fnstr *	pattern_files_last = NULL
static fndatastr	exclude_from_data = { &exclude_from, &exclude_from_last }
static fndatastr	include_from_data = { &include_from, &include_from_last }
static fndatastr	file_lists_data = { &file_lists, &file_lists_last }
static fndatastr	pattern_files_data = { &pattern_files, &pattern_files_last }
static patstr *	patterns = NULL
static patstr *	patterns_last = NULL
static patstr *	include_patterns = NULL
static patstr *	include_patterns_last = NULL
static patstr *	exclude_patterns = NULL
static patstr *	exclude_patterns_last = NULL
static patstr *	include_dir_patterns = NULL
static patstr *	include_dir_patterns_last = NULL
static patstr *	exclude_dir_patterns = NULL
static patstr *	exclude_dir_patterns_last = NULL
static patdatastr	match_patdata = { &patterns, &patterns_last }
static patdatastr	include_patdata = { &include_patterns, &include_patterns_last }
static patdatastr	exclude_patdata = { &exclude_patterns, &exclude_patterns_last }
static patdatastr	include_dir_patdata = { &include_dir_patterns, &include_dir_patterns_last }
static patdatastr	exclude_dir_patdata = { &exclude_dir_patterns, &exclude_dir_patterns_last }
static patstr **	incexlist [4]
static const char *	incexname [4]
static option_item	optionlist []
static const char *	prefix []
static const char *	suffix []
const int	utf8_table3 [] = { 0xff, 0x1f, 0x0f, 0x07, 0x03, 0x01}
const char	utf8_table4 []
int	sys_nerr
char *	sys_errlist []

Macro Definition Documentation

FALSE

#define FALSE   0

Definition at line 74 of file pcregrep.c.

FILESEP

#define FILESEP   0

Definition at line 788 of file pcregrep.c.

FWRITE

#define FWRITE	(		a,
			b,
			c,
			d
	)		if (fwrite(a,b,c,d)) {}

Definition at line 124 of file pcregrep.c.

MAXPATLEN

#define MAXPATLEN   8192

Definition at line 84 of file pcregrep.c.

N_BINARY_FILES

#define N_BINARY_FILES   (-18)

Definition at line 323 of file pcregrep.c.

N_BUFSIZE

#define N_BUFSIZE   (-15)

Definition at line 320 of file pcregrep.c.

N_COLOUR

#define N_COLOUR   (-1)

Definition at line 306 of file pcregrep.c.

N_EXCLUDE

#define N_EXCLUDE   (-2)

Definition at line 307 of file pcregrep.c.

N_EXCLUDE_DIR

#define N_EXCLUDE_DIR   (-3)

Definition at line 308 of file pcregrep.c.

N_EXCLUDE_FROM

#define N_EXCLUDE_FROM   (-19)

Definition at line 324 of file pcregrep.c.

N_FILE_LIST

#define N_FILE_LIST   (-17)

Definition at line 322 of file pcregrep.c.

N_FOFFSETS

#define N_FOFFSETS   (-11)

Definition at line 316 of file pcregrep.c.

N_HELP

#define N_HELP   (-4)

Definition at line 309 of file pcregrep.c.

N_INCLUDE

#define N_INCLUDE   (-5)

Definition at line 310 of file pcregrep.c.

N_INCLUDE_DIR

#define N_INCLUDE_DIR   (-6)

Definition at line 311 of file pcregrep.c.

N_INCLUDE_FROM

#define N_INCLUDE_FROM   (-20)

Definition at line 325 of file pcregrep.c.

N_LABEL

#define N_LABEL   (-7)

Definition at line 312 of file pcregrep.c.

N_LBUFFER

#define N_LBUFFER   (-12)

Definition at line 317 of file pcregrep.c.

N_LOCALE

#define N_LOCALE   (-8)

Definition at line 313 of file pcregrep.c.

N_LOFFSETS

#define N_LOFFSETS   (-10)

Definition at line 315 of file pcregrep.c.

N_M_LIMIT

#define N_M_LIMIT   (-13)

Definition at line 318 of file pcregrep.c.

N_M_LIMIT_REC

#define N_M_LIMIT_REC   (-14)

Definition at line 319 of file pcregrep.c.

N_NOJIT

#define N_NOJIT   (-16)

Definition at line 321 of file pcregrep.c.

N_NULL

#define N_NULL   (-9)

Definition at line 314 of file pcregrep.c.

N_OM_SEPARATOR

#define N_OM_SEPARATOR   (-21)

Definition at line 326 of file pcregrep.c.

OFFSET_SIZE

#define OFFSET_SIZE   99

Definition at line 79 of file pcregrep.c.

PATBUFSIZE

#define PATBUFSIZE   (MAXPATLEN + 10) /* Allows for prefix+suffix */

Definition at line 87 of file pcregrep.c.

PO_FIXED_STRINGS

#define PO_FIXED_STRINGS   0x0004

Definition at line 108 of file pcregrep.c.

PO_LINE_MATCH

#define PO_LINE_MATCH   0x0002

Definition at line 107 of file pcregrep.c.

PO_WORD_MATCH

#define PO_WORD_MATCH   0x0001

Definition at line 106 of file pcregrep.c.

TRUE

#define TRUE   1

Definition at line 75 of file pcregrep.c.

Typedef Documentation

BOOL

typedef int BOOL

Definition at line 77 of file pcregrep.c.

directory_type

typedef void directory_type

Definition at line 789 of file pcregrep.c.

fndatastr

typedef struct fndatastr fndatastr

fnstr

typedef struct fnstr fnstr

omdatastr

typedef struct omdatastr omdatastr

omstr

typedef struct omstr omstr

option_item

typedef struct option_item option_item

patdatastr

typedef struct patdatastr patdatastr

patstr

typedef struct patstr patstr

Enumeration Type Documentation

anonymous enum

anonymous enum

Enumerator
FN_NONE
FN_DEFAULT
FN_MATCH_ONLY
FN_NOMATCH_ONLY
FN_FORCE

Definition at line 93 of file pcregrep.c.

anonymous enum

anonymous enum

Enumerator
FR_PLAIN
FR_LIBZ
FR_LIBBZ2

Definition at line 97 of file pcregrep.c.

anonymous enum

anonymous enum

Enumerator
dee_READ
dee_SKIP
dee_RECURSE

Definition at line 101 of file pcregrep.c.

anonymous enum

anonymous enum

Enumerator
DEE_READ
DEE_SKIP

Definition at line 102 of file pcregrep.c.

anonymous enum

anonymous enum

Enumerator
EL_LF
EL_CR
EL_CRLF
EL_ANY
EL_ANYCRLF

Definition at line 112 of file pcregrep.c.

anonymous enum

anonymous enum

Enumerator
BIN_BINARY
BIN_NOMATCH
BIN_TEXT

Definition at line 116 of file pcregrep.c.

anonymous enum

anonymous enum

Enumerator
OP_NODATA
OP_STRING
OP_OP_STRING
OP_NUMBER
OP_LONGNUMBER
OP_OP_NUMBER
OP_OP_NUMBERS
OP_PATLIST
OP_FILELIST
OP_BINFILES

Definition at line 292 of file pcregrep.c.

Function Documentation

add_number()

static omstr* add_number ( int  n, omstr *  after  )

static

Definition at line 1046 of file pcregrep.c.

References malloc(), n, omstr::next, NULL, om, and pcregrep_exit().

Referenced by handle_option(), and main().

add_pattern()

static patstr* add_pattern ( char *  s, patstr *  after  )

static

Definition at line 462 of file pcregrep.c.

References patstr::compiled, free(), patstr::hint, malloc(), MAXPATLEN, patstr::next, NULL, pcregrep_exit(), and patstr::string.

Referenced by compile_pattern(), main(), and read_pattern_file().

closedirectory()

void closedirectory

(

directory_type *

dir

)

Definition at line 794 of file pcregrep.c.

Referenced by grep_or_recurse().

compile_pattern()

static BOOL compile_pattern ( patstr *  p, int  options, int  popts, int  fromfile, const char *  fromtext, int  count  )

static

Definition at line 2506 of file pcregrep.c.

References add_pattern(), buffer, patstr::compiled, end_of_line(), FALSE, int, NULL, ordin(), PATBUFSIZE, pcre_compile(), pcretables, PO_FIXED_STRINGS, prefix, patstr::string, suffix, and TRUE.

Referenced by main(), and read_pattern_file().

decode_number()

static long int decode_number ( char *  option_data, option_item *  op, BOOL  longop  )

static

Definition at line 992 of file pcregrep.c.

References int, isdigit(), isspace(), option_item::long_name, n, NULL, option_item::one_char, pcregrep_exit(), toupper(), and usage().

Referenced by main().

do_after_lines()

static void do_after_lines ( unsigned long int  lastmatchnumber, char *  lastmatchrestart, char *  endptr, char *  printname  )

static

Definition at line 1390 of file pcregrep.c.

References after_context, end_of_line(), FWRITE, hyphenpending, NULL, number, and TRUE.

Referenced by pcregrep().

end_of_line()

static char* end_of_line ( char *  p, char *  endptr, int *  lenptr  )

static

Definition at line 1119 of file pcregrep.c.

References EL_ANY, EL_ANYCRLF, EL_CR, EL_CRLF, EL_LF, endlinetype, utf8, utf8_table3, and utf8_table4.

Referenced by compile_pattern(), do_after_lines(), and pcregrep().

free_file_chain()

static void free_file_chain ( fnstr *  fn )

static

Definition at line 525 of file pcregrep.c.

References f(), free(), and NULL.

Referenced by main().

free_pattern_chain()

static void free_pattern_chain ( patstr *  pc )

static

Definition at line 502 of file pcregrep.c.

References patstr::compiled, free(), patstr::hint, patstr::next, NULL, pcre_free, and pcre_free_study().

Referenced by main().

grep_or_recurse()

static int grep_or_recurse ( char *  pathname, BOOL  dir_recurse, BOOL  only_one_at_top  )

static

Definition at line 2145 of file pcregrep.c.

References buffer, BZ2_bzclose(), BZ2_bzerror(), BZ2_bzopen(), BZ_DATA_ERROR_MAGIC, closedirectory(), dee_action, DEE_action, dee_RECURSE, dee_SKIP, DEE_SKIP, exclude_dir_patterns, exclude_patterns, FALSE, filenames, FILESEP, FN_DEFAULT, FR_LIBBZ2, FR_LIBZ, FR_PLAIN, gzclose, gzopen, in(), include_dir_patterns, include_patterns, int, isdirectory(), isregfile(), NULL, opendirectory(), pcregrep(), readdirectory(), silent, stdin_name, util::strcmp(), strerror(), and test_incexc().

Referenced by main().

handle_option()

static int handle_option ( int  letter, int  options  )

static

Definition at line 2405 of file pcregrep.c.

References add_number(), BIN_NOMATCH, BIN_TEXT, binary_files, count_only, dee_action, dee_RECURSE, file_offsets, filenames, FN_FORCE, FN_MATCH_ONLY, FN_NOMATCH_ONLY, FN_NONE, help(), invert, letter(), line_buffered, line_offsets, multiline, N_FOFFSETS, N_HELP, N_LBUFFER, N_LOFFSETS, N_NOJIT, NULL, number, omit_zero_count, only_matching, only_matching_last, PCRE_CASELESS, PCRE_FIRSTLINE, PCRE_MULTILINE, PCRE_STUDY_JIT_COMPILE, PCRE_UTF8, pcre_version(), pcregrep_exit(), PO_FIXED_STRINGS, PO_LINE_MATCH, PO_WORD_MATCH, process_options, quiet, silent, study_options, TRUE, usage(), and utf8.

Referenced by main().

help()

static void help ( void  )

static

Definition at line 870 of file pcregrep.c.

References option_item::help_text, option_item::long_name, MAXPATLEN, n, NULL, option_item::one_char, optionlist, and PCREGREP_BUFSIZE.

Referenced by CTrackConfigUtils::CreateCategory(), CTrackConfigUtils::CreateChoice(), CTrackConfigUtils::CreateChoiceItem(), CTrackConfigUtils::CreateRangeControl(), CSixFramesTransTrackFactory::GetSettings(), handle_option(), NAutomation::CArgument::Help(), SSimpleCommandImpl::Help(), SVariadicCommandImpl::Help(), SCommandGroupImpl::Help(), NAutomation::CAutomationProc::ProcessMessage(), and CTempTrackProxy::SetHelp().

is_file_tty()

static BOOL is_file_tty ( FILE *  f )

static

Definition at line 813 of file pcregrep.c.

References FALSE.

Referenced by pcregrep().

is_stdout_tty()

static BOOL is_stdout_tty ( void  )

static

Definition at line 807 of file pcregrep.c.

References FALSE.

Referenced by main().

isdirectory()

int isdirectory

(

char *

filename

)

Definition at line 791 of file pcregrep.c.

Referenced by grep_or_recurse().

isregfile()

int isregfile

(

char *

filename

)

Definition at line 801 of file pcregrep.c.

Referenced by grep_or_recurse().

main()

int main	(	int	argc,
		char **	argv
	)

Definition at line 2658 of file pcregrep.c.

References add_number(), add_pattern(), after_context, omdatastr::anchor, fndatastr::anchor, patdatastr::anchor, before_context, BIN_BINARY, BIN_NOMATCH, BIN_TEXT, binary_files, both_context, buffer, bufsize, bufthird, colour_option, colour_string, compile_pattern(), patstr::compiled, option_item::dataptr, decode_number(), dee_action, DEE_action, dee_option, DEE_option, dee_READ, DEE_READ, dee_RECURSE, dee_SKIP, DEE_SKIP, do_colour, EL_ANY, EL_ANYCRLF, EL_CR, EL_CRLF, EL_LF, endlinetype, exclude_dir_patterns, exclude_from, exclude_patterns, exclude_patterns_last, FALSE, file_lists, file_offsets, filenames, pcre_extra::flags, FN_DEFAULT, FR_PLAIN, free(), free_file_chain(), free_pattern_chain(), grep_or_recurse(), handle_option(), patstr::hint, i, incexlist, incexname, include_dir_patterns, include_from, include_patterns, include_patterns_last, int, is_stdout_tty(), isdigit(), isspace(), omdatastr::lastptr, fndatastr::lastptr, patdatastr::lastptr, line_offsets, locale, option_item::long_name, main_buffer, malloc(), pcre_extra::match_limit, match_limit, pcre_extra::match_limit_recursion, match_limit_recursion, n, N_COLOUR, fnstr::name, newline, next(), fnstr::next, patstr::next, NULL, option_item::one_char, only_matching, only_matching_last, OP_BINFILES, OP_FILELIST, OP_LONGNUMBER, OP_NODATA, OP_NUMBER, OP_OP_NUMBER, OP_OP_NUMBERS, OP_OP_STRING, OP_PATLIST, optionlist, PATBUFSIZE, pattern_files, patterns, patterns_last, pcre_assign_jit_stack(), pcre_config(), PCRE_CONFIG_NEWLINE, PCRE_EXTRA_MATCH_LIMIT, PCRE_EXTRA_MATCH_LIMIT_RECURSION, pcre_jit_stack_alloc(), pcre_jit_stack_free(), pcre_maketables(), PCRE_NEWLINE_ANY, PCRE_NEWLINE_ANYCRLF, PCRE_NEWLINE_CR, PCRE_NEWLINE_CRLF, PCRE_NEWLINE_LF, pcre_options, pcre_study(), PCRE_STUDY_EXTRA_NEEDED, PCRE_STUDY_JIT_COMPILE, pcregrep(), pcregrep_exit(), pcretables, process_options, read_pattern_file(), show_only_matching, stdin_name, util::strcmp(), strerror(), util::strncmp(), study_options, TRUE, option_item::type, and usage().

match_patterns()

static BOOL match_patterns ( char *  matchptr, size_t  length, unsigned int  options, int  startoffset, int *  offsets, int *  mrc  )

static

Definition at line 1434 of file pcregrep.c.

References patstr::compiled, error_count, FALSE, FWRITE, patstr::hint, i, invert, patstr::next, NULL, OFFSET_SIZE, patterns, PCRE_ERROR_JIT_STACKLIMIT, PCRE_ERROR_MATCHLIMIT, PCRE_ERROR_NOMATCH, PCRE_ERROR_RECURSIONLIMIT, pcre_exec(), pcregrep_exit(), resource_error, and TRUE.

Referenced by pcregrep().

opendirectory()

directory_type* opendirectory

(

char *

filename

)

Definition at line 792 of file pcregrep.c.

Referenced by grep_or_recurse().

ordin()

static char* ordin ( int  n )

static

Definition at line 2462 of file pcregrep.c.

References buffer, and n.

Referenced by compile_pattern().

pcregrep()

static int pcregrep ( void *  handle, int  frtype, char *  filename, char *  printname  )

static

Definition at line 1502 of file pcregrep.c.

References after_context, before_context, BIN_NOMATCH, BIN_TEXT, binary_files, bufsize, bufthird, BZ2_bzread(), colour_string, patstr::compiled, count_only, delta(), do_after_lines(), do_colour, dummy, end_of_line(), FALSE, file_offsets, filenames, first(), FN_MATCH_ONLY, FN_NOMATCH_ONLY, FN_NONE, FR_LIBBZ2, FR_LIBZ, FWRITE, gzread, patstr::hint, hyphenpending, i, in(), int, invert, is_file_tty(), last(), line_buffered, line_offsets, main_buffer, malloc(), match(), match_patterns(), memmove, multiline, n, NULL, number, OFFSET_SIZE, om, om_separator, omit_zero_count, only_matching, orig, patterns, pcre_exec(), PCRE_NOTEMPTY, pcregrep_exit(), previous_line(), quiet, read_one_line(), show_only_matching, start_time, t, TRUE, and utf8.

Referenced by grep_or_recurse(), and main().

pcregrep_exit()

static void pcregrep_exit ( int  rc )

static

Definition at line 434 of file pcregrep.c.

References exit(), PCRE_ERROR_JIT_STACKLIMIT, PCRE_ERROR_MATCHLIMIT, PCRE_ERROR_RECURSIONLIMIT, and resource_error.

Referenced by add_number(), add_pattern(), decode_number(), handle_option(), main(), match_patterns(), and pcregrep().

previous_line()

static char* previous_line ( char *  p, char *  startptr  )

static

Definition at line 1280 of file pcregrep.c.

References EL_ANY, EL_ANYCRLF, EL_CR, EL_CRLF, EL_LF, endlinetype, utf8, utf8_table3, and utf8_table4.

Referenced by pcregrep().

read_one_line()

static unsigned int read_one_line ( char *  buffer, int  length, FILE *  f  )

static

Definition at line 1088 of file pcregrep.c.

References buffer, and f().

Referenced by pcregrep().

read_pattern_file()

static BOOL read_pattern_file ( char *  name, patstr **  patptr, patstr **  patlastptr, int  popts  )

static

Definition at line 2582 of file pcregrep.c.

References add_pattern(), buffer, compile_pattern(), f(), FALSE, int, isspace(), patstr::next, NULL, PATBUFSIZE, pcre_options, stdin_name, util::strcmp(), strerror(), and TRUE.

Referenced by main().

readdirectory()

char* readdirectory

(

directory_type *

dir

)

Definition at line 793 of file pcregrep.c.

Referenced by grep_or_recurse().

strerror()

char* strerror

(

int

n

)

Definition at line 835 of file pcregrep.c.

References n, sys_errlist, and sys_nerr.

Referenced by compress(), COutputFileHelper::CreateTemporaryFile(), dbperror(), CRandomSupplier::GetRand(), GiDataIndex_New(), grep_or_recurse(), CInterProcessLock::Lock(), main(), mdb_page_flush(), mdb_strerror(), mdb_txn_begin(), NcbiErrnoStr(), NcbiMessagePlusError(), CPubseqGatewayCacheBase::Open(), SJobDumpHeader::Read(), SOneStructDumpHeader::Read(), SAffinityDictDump::Read(), SGroupDictDump::Read(), SQueueDescriptionDump::Read(), SLinkedSectionDump::Read(), SJobEventsDump::Read(), SJobIODump::Read(), SJobDump::Read(), read_pattern_file(), CGridCommandLineInterfaceApp::Run(), CComponentIDToolApp::Run(), s_ApplyMap(), s_ErrnoToString(), s_LogWithErrno(), s_OpenPipeOrPty(), s_OSReason(), s_Run(), s_Tee(), tds_process_info(), testf(), uncompress(), SJobDumpHeader::Write(), SOneStructDumpHeader::Write(), SAffinityDictDump::Write(), SGroupDictDump::Write(), SQueueDescriptionDump::Write(), SLinkedSectionDump::Write(), SJobEventsDump::Write(), SJobIODump::Write(), SJobDump::Write(), CQueueDataBase::x_CreateSpaceReserveFile(), and x_ReadChunkHead().

test_incexc()

static BOOL test_incexc ( char *  path, patstr *  ip, patstr *  ep  )

static

Definition at line 952 of file pcregrep.c.

References patstr::compiled, FALSE, ip, patstr::next, NULL, pcre_exec(), and TRUE.

Referenced by grep_or_recurse().

usage()

static int usage ( int  rc )

static

Definition at line 849 of file pcregrep.c.

References option_item::one_char, and optionlist.

Referenced by decode_number(), handle_option(), and main().

Variable Documentation

after_context

int after_context = 0

static

Definition at line 157 of file pcregrep.c.

Referenced by do_after_lines(), main(), and pcregrep().

before_context

int before_context = 0

static

Definition at line 158 of file pcregrep.c.

Referenced by main(), and pcregrep().

binary_files

int binary_files = BIN_BINARY

static

Definition at line 159 of file pcregrep.c.

Referenced by handle_option(), main(), and pcregrep().

both_context

int both_context = 0

static

Definition at line 160 of file pcregrep.c.

Referenced by main().

bufsize

int bufsize = 3*PCREGREP_BUFSIZE

static

Definition at line 162 of file pcregrep.c.

Referenced by blk_gettext(), CNcbiApplogApp::Cmd_Generate(), CORE_GetUsername(), CORE_GetUsernameEx(), dbreadtext(), dbstrbuild(), DSOCK_RecvMsg(), main(), MIME_ComposeContentTypeEx(), NcbiAddrToDNS(), NcbiAddrToString(), NcbiDumpIPRange(), NcbiGetHostIP(), NcbiIPv4ToString(), NcbiIPv6ToString(), CHttpGetParser::Parse(), pcregrep(), readBlobAsChar(), s_CP(), s_RecvMsg(), SERV_PrintFirewallPorts(), SOCK_gethostbyaddr(), SOCK_gethostbyaddrEx(), SOCK_gethostname(), SOCK_gethostnameEx(), SOCK_GetPeerAddressString(), SOCK_GetPeerAddressStringEx(), SOCK_ntoa(), tds_alloc_socket(), tds_init_connection(), tds_init_socket(), tds_realloc_socket(), x_IPv4ToString(), x_IPv6ToString(), x_SaveStr(), and x_UpdateDtabInArgs().

bufthird

int bufthird = PCREGREP_BUFSIZE

static

Definition at line 161 of file pcregrep.c.

Referenced by main(), and pcregrep().

colour_option

char* colour_option = NULL

static

Definition at line 146 of file pcregrep.c.

Referenced by main().

colour_string

char* colour_string = (char *)"1;31"

static

Definition at line 145 of file pcregrep.c.

Referenced by main(), and pcregrep().

count_only

BOOL count_only = 0

static

Definition at line 185 of file pcregrep.c.

Referenced by handle_option(), and pcregrep().

dee_action

int dee_action = dee_READ

static

Definition at line 167 of file pcregrep.c.

Referenced by grep_or_recurse(), handle_option(), and main().

DEE_action

int DEE_action = DEE_READ

static

Definition at line 170 of file pcregrep.c.

Referenced by grep_or_recurse(), and main().

dee_option

char* dee_option = NULL

static

Definition at line 147 of file pcregrep.c.

Referenced by main().

DEE_option

char* DEE_option = NULL

static

Definition at line 148 of file pcregrep.c.

Referenced by main().

do_colour

BOOL do_colour = 0

static

Definition at line 186 of file pcregrep.c.

Referenced by main(), and pcregrep().

endlinetype

int endlinetype

static

Definition at line 143 of file pcregrep.c.

Referenced by end_of_line(), main(), and previous_line().

error_count

int error_count = 0

static

Definition at line 171 of file pcregrep.c.

Referenced by CReaderServiceConnector::Connect(), match_patterns(), CReader::SetMaximumConnections(), and CReaderServiceConnector::SetOpenTimeoutTo().

exclude_dir_patdata

patdatastr exclude_dir_patdata = { &exclude_dir_patterns, &exclude_dir_patterns_last }

static

Definition at line 282 of file pcregrep.c.

exclude_dir_patterns

patstr* exclude_dir_patterns = NULL

static

Definition at line 267 of file pcregrep.c.

Referenced by grep_or_recurse(), and main().

exclude_dir_patterns_last

patstr* exclude_dir_patterns_last = NULL

static

Definition at line 268 of file pcregrep.c.

exclude_from

fnstr* exclude_from = NULL

static

Definition at line 227 of file pcregrep.c.

Referenced by main().

exclude_from_data

fndatastr exclude_from_data = { &exclude_from, &exclude_from_last }

static

Definition at line 244 of file pcregrep.c.

exclude_from_last

fnstr* exclude_from_last = NULL

static

Definition at line 228 of file pcregrep.c.

exclude_patdata

patdatastr exclude_patdata = { &exclude_patterns, &exclude_patterns_last }

static

Definition at line 280 of file pcregrep.c.

exclude_patterns

patstr* exclude_patterns = NULL

static

Definition at line 263 of file pcregrep.c.

Referenced by grep_or_recurse(), CCgiUserAgent::IsBot(), CCgiUserAgent::IsMobileDevice(), CCgiUserAgent::IsPhoneDevice(), CCgiUserAgent::IsTabletDevice(), main(), and CCgiUserAgent::x_CheckPattern().

exclude_patterns_last

patstr* exclude_patterns_last = NULL

static

Definition at line 264 of file pcregrep.c.

Referenced by main().

file_lists

fnstr* file_lists = NULL

static

Definition at line 232 of file pcregrep.c.

Referenced by main().

file_lists_data

fndatastr file_lists_data = { &file_lists, &file_lists_last }

static

Definition at line 246 of file pcregrep.c.

file_lists_last

fnstr* file_lists_last = NULL

static

Definition at line 233 of file pcregrep.c.

file_offsets

BOOL file_offsets = 0

static

Definition at line 187 of file pcregrep.c.

Referenced by handle_option(), main(), and pcregrep().

filenames

int filenames = FN_DEFAULT

static

Definition at line 172 of file pcregrep.c.

Referenced by CBamLoadOptionPanel::AddFilenames(), CMacroLib::AppendToLibrary(), chooseSettings(), CAppDialogs::COpenDialog(), CProjectTask::CProjectTask(), CTableObjectLoader::CTableObjectLoader(), CFileLoadManager::DoTransition(), CTableImportWizard::GetExecuteUnit(), CASNFormatLoadManager::GetFilenames(), CFileAutoLoader::GetFilenames(), CFileLoadOptionPanel::GetFilenames(), CTableFileLoadManager::GetFilenames(), CProjectFormatLoadManager::GetFilenames(), CGBFlatFileLoadManager::GetFilenames(), CQualTableLoadManager::GetFilenames(), CMultiFileInput::GetFilenames(), CPhyLoader::GetFilenames(), CPslLoadManager::GetFilenames(), CRMLoader::GetFilenames(), CTextAlignLoaderManager::GetFilenames(), C5ColLoadManager::GetFilenames(), CAgpLoader::GetFilenames(), CBedLoadManager::GetFilenames(), CColumnarVCFLoaderManager::GetFilenames(), CFASTAFormatLoadManager::GetFilenames(), CGffLoadManager::GetFilenames(), CVCFLoaderManager::GetFilenames(), CWigLoadManager::GetFilenames(), CFileLoadPanel::GetFilenames(), CProjectLoadOptionPanel::GetProjectFilenames(), CFileLoadManager::GetTask(), CProjectLoadManager::GetTask(), grep_or_recurse(), handle_option(), CSeqEditPackage::Init(), CEditingBtnsPanel::LoadSettings(), main(), NcbiFileBrowser(), CBamLoadOptionPanel::OnButtonClick(), CProjectTreeViewDropTarget::OnData(), CBamLoadOptionPanel::CDropTarget::OnData(), CMultiFileInput::CDropTarget::OnData(), CFrameworkDemoGUIDropTarget::OnData(), CProjectLoadOptionPanel::OnFinish(), CMacroFlowEditor::OnInputFile(), pcregrep(), CEditingBtnsPanel::RemoveStaticButtons(), CAgpValidateApplication::Run(), CEditingBtnsPanel::SaveSettings(), CASNFormatLoadManager::SetFilenames(), CFileAutoLoader::SetFilenames(), CFileLoadOptionPanel::SetFilenames(), COpenDlg::SetFilenames(), CTableFileLoadManager::SetFilenames(), CProjectFormatLoadManager::SetFilenames(), CGBFlatFileLoadManager::SetFilenames(), CQualTableLoadManager::SetFilenames(), CMultiFileInput::SetFilenames(), CPhyLoader::SetFilenames(), CPslLoadManager::SetFilenames(), CRMLoader::SetFilenames(), CTextAlignLoaderManager::SetFilenames(), C5ColLoadManager::SetFilenames(), CAgpLoader::SetFilenames(), CBedLoadManager::SetFilenames(), CColumnarVCFLoaderManager::SetFilenames(), CFASTAFormatLoadManager::SetFilenames(), CGffLoadManager::SetFilenames(), CVCFLoaderManager::SetFilenames(), CWigLoadManager::SetFilenames(), CFileLoadPanel::SetFilenames(), CBamLoadOptionPanel::SetFilenames(), CFileLoadManager::SetFilenames(), CFileLoadWizard::SetFilenames(), CAttribTableColumnIdPanel::SetFileNames(), CFileAutoLoader::SetFormatManager(), sFilenameSetToString(), CFileAutoLoader::ValidateFilenames(), CTableFileLoadManager::ValidateFilenames(), CProjectFormatLoadManager::ValidateFilenames(), CQualTableLoadManager::ValidateFilenames(), CTableImportWizard::ValidateFilenames(), CFileLoadWizard::x_CanLeavePage(), CFileLoadManager::x_CanLeavePage(), CFileLoadWizard::x_CheckFormatConflict(), CFileLoadManager::x_CheckFormatConflict(), CProjectLoadOptionPanel::x_Finish(), CProjectLoadOptionPanel::x_GetSelectedMRUFilenames(), CMakeProfileDBApp::x_GetSMPFilenames(), CMultiFileInput::x_OnAddFilenames(), and CMakeBlastDBApp::x_VerifyInputFilesType().

hyphenpending

BOOL hyphenpending = 0

static

Definition at line 188 of file pcregrep.c.

Referenced by do_after_lines(), and pcregrep().

incexlist

patstr** incexlist[4]

static

Initial value:

= { &include_patterns, &exclude_patterns,
                                 &include_dir_patterns, &exclude_dir_patterns }

Definition at line 284 of file pcregrep.c.

Referenced by main().

incexname

const char* incexname[4]

static

Initial value:

= { "--include", "--exclude",
                                    "--include-dir", "--exclude-dir" }

Definition at line 287 of file pcregrep.c.

Referenced by main().

include_dir_patdata

patdatastr include_dir_patdata = { &include_dir_patterns, &include_dir_patterns_last }

static

Definition at line 281 of file pcregrep.c.

include_dir_patterns

patstr* include_dir_patterns = NULL

static

Definition at line 265 of file pcregrep.c.

Referenced by grep_or_recurse(), and main().

include_dir_patterns_last

patstr* include_dir_patterns_last = NULL

static

Definition at line 266 of file pcregrep.c.

include_from

fnstr* include_from = NULL

static

Definition at line 229 of file pcregrep.c.

Referenced by main().

include_from_data

fndatastr include_from_data = { &include_from, &include_from_last }

static

Definition at line 245 of file pcregrep.c.

include_from_last

fnstr* include_from_last = NULL

static

Definition at line 230 of file pcregrep.c.

include_patdata

patdatastr include_patdata = { &include_patterns, &include_patterns_last }

static

Definition at line 279 of file pcregrep.c.

include_patterns

patstr* include_patterns = NULL

static

Definition at line 261 of file pcregrep.c.

Referenced by grep_or_recurse(), CCgiUserAgent::IsBot(), CCgiUserAgent::IsMobileDevice(), CCgiUserAgent::IsPhoneDevice(), CCgiUserAgent::IsTabletDevice(), main(), and CCgiUserAgent::x_CheckPattern().

include_patterns_last

patstr* include_patterns_last = NULL

static

Definition at line 262 of file pcregrep.c.

Referenced by main().

invert

BOOL invert = 0

static

Definition at line 189 of file pcregrep.c.

Referenced by bm::blocks_manager< Alloc >::clone_assign_block(), CStringConstraint::DoesListMatch(), bm::serializer< BV >::encode_gap_block(), ErfImpl(), bm::sparse_vector_scanner< SV, S_FACTOR >::find_le(), bm::sparse_vector_scanner< SV, S_FACTOR >::find_lt(), bm::sparse_vector_scanner< SV, S_FACTOR >::find_zero(), bm::gap_convert_to_arr(), handle_option(), match_patterns(), and pcregrep().

line_buffered

BOOL line_buffered = 0

static

Definition at line 190 of file pcregrep.c.

Referenced by handle_option(), and pcregrep().

line_offsets

BOOL line_offsets = 0

static

Definition at line 191 of file pcregrep.c.

Referenced by handle_option(), main(), and pcregrep().

locale

char* locale = NULL

static

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbistr.hpp.

Definition at line 149 of file pcregrep.c.

Referenced by _cs_locale_free(), _cs_locale_free_contents(), CTempXStr< _TChar >::CompareNocase(), cs_dt_info(), cs_loc_drop(), cs_locale(), cs_strcmp(), cs_time(), ct_connect(), get_ctype_facet(), main(), NormalizeStatKeyName(), password_contains_curly_braces(), password_contains_curly_braces_and_separator(), s_ExtractKey(), s_FormatNum(), s_SetPubLocale(), s_ToLower(), s_ToUpper(), mu::Parser::SetDecSep(), mu::ParserBase::SetExpr(), mu::Parser::SetThousandsSep(), simple_escaped_string(), simple_string(), tds_alloc_context(), tds_alloc_locale(), tds_free_locale(), tds_get_locale(), tds_init_login(), tds_parse_locale(), tds_read_config_info(), test_special_symbols(), SLocaleEncoder::ToUnicode(), and CPublicationTypePanel::x_CollectDetails().

main_buffer

char* main_buffer = NULL

static

Definition at line 150 of file pcregrep.c.

Referenced by main(), and pcregrep().

match_limit

unsigned long int match_limit = 0

static

Definition at line 182 of file pcregrep.c.

Referenced by main().

match_limit_recursion

unsigned long int match_limit_recursion = 0

static

Definition at line 183 of file pcregrep.c.

Referenced by main().

match_patdata

patdatastr match_patdata = { &patterns, &patterns_last }

static

Definition at line 278 of file pcregrep.c.

multiline

BOOL multiline = 0

static

Definition at line 192 of file pcregrep.c.

Referenced by NAutomation::SNetService::ExecExec(), g_ExecAnyCmdToJson(), handle_option(), and pcregrep().

newline

char* newline = NULL

static

Definition at line 151 of file pcregrep.c.

Referenced by CNcbiApplogApp::Cmd_Generate(), CORE_SendMailEx(), main(), pcre_compile2(), pcre_dfa_exec(), pcre_exec(), and s_ModifyUserHeader().

number

BOOL number = 0

static

Definition at line 193 of file pcregrep.c.

Referenced by _cs_get_msgstr(), _csclient_msg(), _ct_get_msgstr(), _ctclient_msg(), _pcre_find_bracket(), AddExon(), CIDs::AddID(), CPagerView::AddImageString(), CPagerView::AddInactiveImageString(), CAlignFormatUtil::AddSpace(), BlastNumber2Program(), BlastProgram2Number(), compile_branch(), SSeqIdRange::const_iterator::const_iterator(), do_after_lines(), CAlignCollapser::FilterAlignments(), CSubSource::FixAltitude(), get_pat(), GetSeqFeatLabel(), GetStringOfFeatQual(), CAlignFormatUtil::GetSubjectsNumber(), CAltitudePanel::GetValue(), handle_option(), CSubSource::IsAltitudeValid(), CAltitudePanel::IsWellFormatted(), longlong_to_numeric(), match(), CRangeListImpl::Parse(), parse_number_value(), CCSRABlobId::ParseReadId(), pcregrep(), CAlignFormatUtil::PruneSeqalign(), CAlignFormatUtil::PruneSeqalignAll(), CAlnVwrApp::Run(), s_CollectNumberAndUnits(), s_GetRoundNumber(), s_MultiplyByte(), s_ParseNumber(), s_RestoreNumber(), s_RestoreNumberAndCaseVariant(), CUTTPWriter::SendChunk(), CUTTPWriter::SendNumber(), CStatusBar::SetFieldsCount(), COligoSpecificityTemplate::SetMaxTargetPerSequence(), COligoSpecificityTemplate::SetNumNonSpecificTargets(), CShowBlastDefline::SetPSIIteration(), CDisplaySeqalign::SetQueryNumber(), CShowBlastDefline::SetQueryNumber(), CStatusBar::SetStatusWidths(), CAltitudePanel::SetValue(), CLatLonPanel::SetValue(), tds_numeric_to_string(), CId1FetchApp::WriteHistoryTable(), CPageList::x_AddImageString(), CPageList::x_AddInactiveImageString(), CSeq_id_Patent_Tree::x_FindInfo(), CFeatureItem::x_FormatQuals(), CAltitudePanel::x_GetNumber(), CFeatureItem::x_ImportQuals(), x_json_array_append_number(), x_json_array_replace_number(), x_json_object_dotset_number(), x_json_object_set_number(), x_json_value_init_number(), CCompoundIDDumpParser::x_ReadIPv4Address(), CMQueryFunctionOps::x_Validate(), and CMQueryFunctionOps::x_ValidateAll().

om_separator

char* om_separator = (char *)""

static

Definition at line 152 of file pcregrep.c.

Referenced by pcregrep().

omit_zero_count

BOOL omit_zero_count = 0

static

Definition at line 194 of file pcregrep.c.

Referenced by handle_option(), and pcregrep().

only_matching

omstr* only_matching = NULL

static

Definition at line 208 of file pcregrep.c.

Referenced by handle_option(), main(), and pcregrep().

only_matching_data

omdatastr only_matching_data = { &only_matching, &only_matching_last }

static

Definition at line 218 of file pcregrep.c.

only_matching_last

omstr* only_matching_last = NULL

static

Definition at line 209 of file pcregrep.c.

Referenced by handle_option(), and main().

optionlist

option_item optionlist[]

static

Definition at line 328 of file pcregrep.c.

Referenced by help(), main(), and usage().

pattern_files

fnstr* pattern_files = NULL

static

Definition at line 234 of file pcregrep.c.

Referenced by main().

pattern_files_data

fndatastr pattern_files_data = { &pattern_files, &pattern_files_last }

static

Definition at line 247 of file pcregrep.c.

pattern_files_last

fnstr* pattern_files_last = NULL

static

Definition at line 235 of file pcregrep.c.

patterns

patstr* patterns = NULL

static

Definition at line 259 of file pcregrep.c.

Referenced by CMultipatternSearch::AddPatterns(), AssignDefaultPatterns(), BOOST_AUTO_TEST_CASE(), main(), match_patterns(), pcregrep(), CTestTranscript_PolyA::RunTest(), s_AfrpProcessFastaGap(), CSuspect_rule_set::Screen(), CTraversalPatternMatchCallback::x_AnyPatternMatches(), CCgiUserAgent::x_CheckPattern(), CMultiAligner::x_FindPatternHits(), x_FindRSite(), x_LoadPatterns(), CSequenceSearchForm::x_UpdateFileList(), COrfSearchForm::x_UpdateKozak(), and xTryProductRules().

patterns_last

patstr* patterns_last = NULL

static

Definition at line 260 of file pcregrep.c.

Referenced by main().

pcre_options

int pcre_options = 0

static

Definition at line 173 of file pcregrep.c.

Referenced by main(), and read_pattern_file().

pcretables

const unsigned char* pcretables = NULL

static

Definition at line 155 of file pcregrep.c.

Referenced by compile_pattern(), and main().

prefix

const char* prefix[]

static

Initial value:

= {
  "", "\\b", "^(?:", "^(?:", "\\Q", "\\b\\Q", "^(?:\\Q", "^(?:\\Q" }

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbistr.hpp.

Definition at line 405 of file pcregrep.c.

Referenced by CTable2AsnStructuredCommentsReader::_CheckStructuredCommentsSuffix(), xml::node::add_namespace_def(), CPagerView::AddImageString(), CPagerView::AddInactiveImageString(), AddModVectorToDefline(), CArgDescriptions::CPrintUsage::AddSynopsis(), CTextUtil::AddWordFrequencies(), CCreateLocusTagGene::apply(), CGenomeInfoPanel::ApplyDescriptor(), CConvertComment::ApplyToComment(), CChangeStructuredCommentKeyword::ApplyToCSeq_entry_user(), CReorderStructuredComment::ApplyToCSeq_entry_user(), CDiscrepancyVisitorImpl< _Name >::Autofix(), BOOST_AUTO_TEST_CASE(), CAutoDefSatelliteClause::CAutoDefSatelliteClause(), CDiagAutoPrefix::CDiagAutoPrefix(), CFlatInferenceQVal::CFlatInferenceQVal(), CValidError_bioseq::CheckForMultipleStructuredComments(), CInputStreamSource::CInputStreamSource(), compile_pattern(), COperationTiming::COperationTiming(), xml::node::create_xpath_context(), CSequencingTechnologyPanel::CreateControls(), CStructuredCommentPanel::CreateControls(), CPluginManager_DllResolver::CreateDllResolver(), XSDParser::CreateEntityId(), CSequenceEditingEventHandler::CreateSpecificStructuredComment(), CFileIO::CreateTemporary(), CDirEntry::CreateTmpFileEx(), CWGSFileInfo::CWGSFileInfo(), CBlastQueryInfo::DebugDump(), CBlastEffectiveLengthsOptions::DebugDump(), CSequenceEditingEventHandler::DeleteSpecificStructuredComment(), CColumnarVCFReaderTest::Deserialize(), CVCFVariantList::DeserializeAndCheck(), NVcfUtil::DeserializeColumn(), CPosToIndex::DeserializeVectors(), CFlat2AsnListener::Dump(), CNcbiEnvironment::Enumerate(), xml::attributes::erase(), xml::node::erase_namespace_definition(), CTar::EstimateArchiveSize(), CDataType::FileName(), fill_names_blob_prefix(), xml::impl::find_default_prop(), xml::impl::find_prop(), CSrzPath::FindAccPath(), CComment_set::FindCommentRule(), CComment_set::FindCommentRuleEx(), CSNPDb_Impl::FindSeq(), CFlatModelEvQVal::Format(), CGenbankFormatter::FormatCache(), CGenbankFormatter::FormatGenomeProject(), fta_create_wgs_dbtag(), fta_create_wgs_seqid(), FtaDeletePrefix(), FtaInstallPrefix(), SPSG_StatsCounters::SReport::Func(), g_GenericStatToJson(), NVcfUtil::GenerateColFileName(), CDeflineGenerator::GenerateDefline(), GenerateTestStrCollection(), xml::ns::get_prefix(), CValidError_feat::GetAccessionsFromInferenceString(), GetBioseqDiffs(), CSeqTechDlg::GetCommand(), CRequestContext::GetCurrentSubHitID(), XSDParser::GetElementNamespace(), CMsvcProjectMakefile::GetExtraFiles(), CGtfLocationMerger::GetFeatureIdFor(), CComment_set::GetFieldNames(), CWGSDataLoader_Impl::GetFileInfoByAcc(), CApplyStructCommentTreeItemData::GetFunction(), CWGSDb_Impl::GetGeneralSeq_id(), CGenomeAnnotComment::GetGenomeBuildNumber(), CObjectOStreamJson::GetJsonpPadding(), CComment_set::GetKeywords(), CAuth_list::GetLabelV2(), CCit_gen::GetLabelV2(), CCit_pat::GetLabelV2(), CApplyStructCommentTreeItemData::GetMacroDescription(), CRequestContext::GetNextSubHitID(), CValidError_feat::GetPrefixAndAccessionFromInferenceAccession(), CInferencePrefixList::GetPrefixAndRemainder(), CWGSResolver_DL::GetPrefixes(), SQueueParameters::GetPrintableParameters(), CQueueDataBase::GetQueueClassesInfo(), CQueueDataBase::GetQueueInfo(), CCommentItem::GetStringForModelEvidance(), CWriteUtil::GetStringForModelEvidence(), CComment_rule::GetStructuredCommentPrefix(), GetTitle(), CDirEntry::GetTmpNameEx(), CWGSClient::GetWGSDb(), CWGSDataLoader_Impl::GetWGSFile(), GICache_ReadData(), GiDataIndex_New(), CInputStreamSource::HaveArgsForPrefix(), CInputStreamSource::InitArgs(), xml::attributes::insert(), CStructuredCommentField::IsStructuredCommentForThisField(), CStructuredCommentField::IsValid(), JoinString(), CComment_rule::KeywordForPrefix(), CLoadStructComments::LoadSingle(), xml::node::lookup_namespace(), xml::impl::lookup_ns_definition(), xml::ns::make_safe(), MakeIndexName(), CComment_rule::MakePrefixFromRoot(), CStructuredCommentField::MakeUserObject(), NcbiLog_GetCurrentSubHitID_Prefix(), NcbiLog_GetNextSubHitID_Prefix(), CGtfIdGenerator::NextId(), Nlm_LabelCopyExtra(), CComment_rule::NormalizePrefix(), NS_ValidateClasses(), NS_ValidateQueues(), NSTGetBackendConfiguration(), NSTValidateServices(), CWGSFileInfo::Open(), CWGSDataLoader_Impl::OpenWGSFile(), CWGSDataLoader_Impl::OpenWGSFileOnce(), CWinMaskCountsGenerator::operator()(), CNetScheduleConfigLoader::operator()(), CWGSResolver_Ids::ParseWGSPrefix(), CChangeStructuredCommentKeyword::PrefixToKeyword(), SInteractiveNewRequestStart::SExtra::Print(), CNetScheduleAccessList::Print(), SBuildInfo::Print(), PrintJSONNode(), CPrintJobInfo::PrintXput(), CWinMaskCountsGenerator::process(), CCgiContext::ProcessCORSRequest(), PushDiagPostPrefix(), CGlimmerReader::Read(), CReadBlastApp::ReadBlast(), CInputStreamSource::RecreateInputArgs(), RemovePrefix(), CVCFVariantList::RemoveSerializedOutput(), CPosToIndex::RemoveSerializedOutput(), CReorderStructuredComment::reorder_comment_by_rule(), CStructuredCommentField::ReorderFields(), SPSG_Stats::Report(), SPSG_StatsAvgTime::Report(), SPSG_StatsData::Report(), SPSG_StatsData::SData< TDataId >::Report(), pub_report::ReportAuththors(), SDataOnlyCopy::ReportErrors(), pub_report::ReportJournal(), pub_report::ReportTitle(), CDemoApp::Run(), CRunTestApplication::Run(), s_AddCDS(), CSingleFeatValidator::s_BioseqHasRefSeqThatStartsWithPrefix(), CCleanup::s_CleanupStructuredComment(), s_CountBlastDbDataLoaders(), s_CreateHistCommentString(), s_DelimitedOutput(), s_DumpHeader(), s_FixStrainForPrefix(), s_FormatCitGen(), s_FormatPatent(), s_GatherIdLabels(), s_GetContentLabel(), s_GetFeatureContentLabelExtras(), s_GetKeywordForStructuredComment(), s_GetPrefixForStructuredComment(), s_GetStrForStructuredComment(), s_GetSubHitID(), s_InitAllKNS(), s_IsGenomeAnnotationStart(), s_IsReportableStructuredComment(), s_LogSocketError(), s_QualVectorToNote(), s_RemoveInitial(), variation::CVariationUtil::s_SpliceLiterals(), s_TrapErrors(), CBlastSetupTestFixture::s_ValidateProtein130912(), s_VT_Write(), SDiagMessage::SDiagMessage(), SNSRegistryParameters::Serialize(), NVcfUtil::SerializeColumn(), CColumnarVCFReaderTest::SerializeToDisk(), CVCFVariantList::SerializeVariantData(), CPosToIndex::SerializeVectors(), xml::attributes::attr::set_namespace(), xml::node::set_namespace(), SetDiagPostPrefix(), CPluginManager_DllResolver::SetDllNamePrefix(), CBDB_Env::SetErrPrefix(), CCodeGenerator::SetFileNamePrefix(), CBlastInputSourceConfig::SetLocalIdPrefix(), CSeqIdGenerator::SetPrefix(), CStackTrace::SetPrefix(), CSoapMessage::SetSoapNamespacePrefix(), CInputStreamSource::SetStandardInputArgs(), CFeatGlyph::SetTopLabelPrefix(), sGetMessageAndReport(), CWGSDb_Impl::SProtAccInfo::SProtAccInfo(), sReportDSExceptionToLog(), CAssemblyTermCompleter::Start(), CContTextCompleter< Container >::Start(), CRNANameCompleter::Start(), CTaxonTextCompleter::Start(), test(), SSatInfoEntry::ToString(), CSequencingTechnologyPanel::TransferDataFromWindow(), CStructuredCommentPanel::TransferDataToWindow(), CNetScheduleConfigLoader::Transform(), transform_range(), UnwrapAccessionRange(), CValidError_imp::Validate(), CValidError_feat::ValidateInference(), CValidError_feat::ValidateInferenceAccession(), CValidError_bioseq::ValidateSeqDescContext(), CValidError_imp::ValidateSeqLoc(), NStr::Wrap(), NStr::WrapList(), SDiagMessage::Write(), CMsvcConfigure::WriteExtraDefines(), CTableImportListCtrl::WriteWidths(), CFlatSeqLoc::x_Add(), CFeatureTableReader_Imp::x_AddQualifierToFeature(), CJob::x_AppendAffinity(), CJob::x_AppendEraseTime(), CJob::x_AppendEvents(), CJob::x_AppendGroup(), CJob::x_AppendId(), CJob::x_AppendInput(), CJob::x_AppendKey(), CJob::x_AppendLastTouch(), CJob::x_AppendListenerNotif(), CJob::x_AppendListenerNotifExpiration(), CJob::x_AppendMask(), CJob::x_AppendNcbiPhid(), CJob::x_AppendNeedListenerProgressMsgNotif(), CJob::x_AppendNeedStolenNotif(), CJob::x_AppendNeedSubmitProgressMsgNotif(), CJob::x_AppendOutput(), CJob::x_AppendProgressMsg(), CJob::x_AppendReadCounter(), CJob::x_AppendReadExpiration(), CJob::x_AppendRemoteClientIP(), CJob::x_AppendRemoteClientSID(), CJob::x_AppendRunCounter(), CJob::x_AppendRunExpiration(), CJob::x_AppendStatus(), CJob::x_AppendSubmitNotifExpiration(), CJob::x_AppendSubmitNotifPort(), CImportFeatTable::x_CreateCommand(), CDBSourceItem::x_ExtractLinkableSource(), CNewCleanup_imp::x_FixStructuredCommentKeywords(), CFeatureItem::x_FormatGOQualCombined(), CDBSourceItem::x_FormatPDBSource(), CGenbankFormatter::x_FormatSourceLine(), x_FormFQDN(), CCommentItem::x_GatherDescInfo(), CWGSResolver_VDB::x_GetAccPrefixes(), CQueueDataBase::x_GetConfigQueues(), CStructuredCommentPanel::x_GetFields(), CWGSDataLoader_Impl::x_GetFileInfo(), CVCFVariantList::x_GetFilePrefix(), CPosToIndex::x_GetFilePrefix(), CFlatItemFormatter::x_GetKeywords(), CCit_pat::x_GetLabelV2(), CNSTServiceRegistry::x_GetMetadataServices(), CSeqTechDlg::x_GetSeqTechUserFromSeqEntry(), x_GICacheInit(), CTableColumnTypeGuesser::x_GuessType(), CWGSFileInfo::x_Initialize(), CValidError_imp::x_InitLocCheck(), CStructCommFieldValuePair::x_InsertFieldAtCorrectPosition(), CSearch_func::x_IsPrefixPlusNumbers(), CDBConnectionFactory::x_LogConnection(), CAppTaskService::x_LogTask(), CPSGS_AsyncResolveBase::x_OnBioseqInfo(), CAutoCompleteCombo::x_OnTimer(), CNetScheduleHandler::x_ProcessGetParam(), CNetScheduleHandler::x_ProcessQueueInfo(), CObjectOStreamXml::x_ProcessTypeNamespace(), CQueueDataBase::x_ReadDumpQueueDesrc(), CTar::x_ReadEntryInfo(), CQueueDataBase::x_ReadIniFileQueueClassDescriptions(), CQueueDataBase::x_ReadIniFileQueueDescriptions(), CQueueDataBase::x_ReadLinkedSections(), CValidError_align::x_ReportAlignErr(), CCleanupApp::x_ReportChanges(), CCommentItem::x_SetCommentWithURLlinks(), CReportEntry::x_SetHgvs(), CDeflineGenerator::x_SetPrefix(), CDeflineGenerator::x_SetTitleFromProtein(), CDeflineGenerator::x_SetTitleFromProteinIdx(), CGenbankFormatter::x_SmartWrapQuals(), CSeqDBIsam::x_StringSearch(), CRequestContext::x_UpdateSubHitID(), CSingleFeatValidator::x_ValidateSeqFeatLoc(), CValidError_desc::x_ValidateStructuredComment(), CValidError_desc::x_ValidateStructuredCommentPrefix(), CValidError_desc::x_ValidateStructuredCommentSuffix(), CSoapMessage::x_VerifyFaultObj(), CGtfReader::xCreateFeatureId(), CFeatTableEdit::xGetCurrentLocusTagPrefix(), CFeatTableEdit::xNextProteinId(), CFeatTableEdit::xNextTranscriptId(), CMultiReaderApp::xPostProcessAnnot(), CVcfReader::xProcessMetaLineFilter(), CVcfReader::xProcessMetaLineFormat(), CVcfReader::xProcessMetaLineInfo(), and CVcfReader::xSetFileFormat().

process_options

int process_options = 0

static

Definition at line 174 of file pcregrep.c.

Referenced by handle_option(), and main().

quiet

BOOL quiet = 0

static

Definition at line 196 of file pcregrep.c.

Referenced by handle_option(), main(), pcregrep(), and CAsn2Asn::RunAsn2Asn().

resource_error

BOOL resource_error = 0

static

Definition at line 195 of file pcregrep.c.

Referenced by match_patterns(), and pcregrep_exit().

show_only_matching

BOOL show_only_matching = 0

static

Definition at line 197 of file pcregrep.c.

Referenced by main(), and pcregrep().

silent

BOOL silent = 0

static

Definition at line 198 of file pcregrep.c.

Referenced by grep_or_recurse(), and handle_option().

stdin_name

char* stdin_name = (char *)"(standard input)"

static

Definition at line 153 of file pcregrep.c.

Referenced by grep_or_recurse(), main(), and read_pattern_file().

study_options

int study_options = 0

static

Definition at line 179 of file pcregrep.c.

Referenced by handle_option(), and main().

suffix

const char* suffix[]

static

Initial value:

= {
  "", "\\b", ")$",   ")$",   "\\E", "\\E\\b", "\\E)$",   "\\E)$" }

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbistr.hpp.

Definition at line 408 of file pcregrep.c.

Referenced by CTable2AsnStructuredCommentsReader::_CheckStructuredCommentsSuffix(), CPagerView::AddImageString(), CPagerView::AddInactiveImageString(), NMacroUtil::ApplyAuthorNames(), CConvertComment::ApplyToComment(), CDiscrepancyVisitorImpl< _Name >::Autofix(), CDirEntry::Backup(), BOOST_AUTO_TEST_CASE(), BrFcgiBookTermToEutilsTerm(), ChangeId(), CIgAnnotationInfo::CIgAnnotationInfo(), CleanVisStringJunk(), compile_pattern(), CSeq_id::ComposeOSLT(), SMakeProjectT::ConvertLibDepends(), COperationTiming::COperationTiming(), SMakeProjectT::Create3PartyLibs(), CPagerViewButtons::CreateSubNodes(), Dump(), DumpData(), CIgBlastArgs::ExtractAlgorithmOptions(), CName_std::ExtractSuffixFromLastName(), CName_std::FixSuffix(), CGenbankFormatter::FormatCache(), CCodeGenerator::GenerateCombiningFile(), CDeflineGenerator::GenerateDefline(), get_auth_from_toks(), GetBiosampleData(), CStructuredCommentCommandConverter::GetCommandFromValuesTable(), CSplitCacheApp::GetFileName(), CObjectOStreamJson::GetJsonpPadding(), CGffIdGenerator::GetNextGffExonId(), CTable2AsnContext::GetOstream(), SQueueParameters::GetPrintableParameters(), GetTitle(), CEditingActionDescAuthorNameList::GetValue(), hasSuffix(), CSubSource::IsISOFormatTime(), CTbl2AsnApp::LoadAdditionalFiles(), CLoadStructComments::LoadSingle(), CAsn2AsnThread::Main(), CComment_rule::MakeSuffixFromRoot(), CUnculTaxTool::MakeUnculturedName(), Nlm_LabelCopyExtra(), CEUtilsGeneric::PathSuffixIs(), printGFF3(), PrintModularDTDModuleReference(), CSplitCacheApp::ProcessBlob(), CSplitCacheApp::ProcessEntry(), RemoveSuffix(), CReorderStructuredComment::reorder_comment_by_rule(), CExplodeRNAFeats::RNAWordsFromString(), CIgBlastnApp::Run(), CTLSApp::Run(), s_AddCDS(), s_AddReciprocityScore(), CMacroFunction_AuthorFix::s_BuildName(), CCleanup::s_CleanupStructuredComment(), s_CreateHistCommentString(), IAuthorEditor::s_FixInitialsNew(), s_FormatPatent(), s_fromatstr(), s_gethostbyaddr_(), s_gethostbyname_(), s_GetStrForStructuredComment(), CUnculturedTool::s_MakeUnculturedName(), s_RemoveBracketedOrgFromEnd(), s_RemoveOrgFromEndOfProtein(), s_RoundResUsageSize(), variation::CVariationUtil::s_SpliceLiterals(), s_SplitMLAuthorName(), s_TitleFromBioSource(), SNSRegistryParameters::Serialize(), CIgBlastArgs::SetArgumentDescriptions(), CDirEntry::SetBackupSuffix(), CServer::SetCustomThreadSuffix(), CAsyncDiagHandler::SetCustomThreadSuffix(), CDataTypeModule::SetModuleFileSuffix(), CSeqIdGenerator::SetSuffix(), CEditingActionDescAuthorNameList::SetValue(), CSymResolver::StripSuffix(), test(), CSingleAuthorPanel::TransferDataToWindow(), CStructuredCommentPanel::TransferDataToWindow(), TrimSpacesAndJunkFromEnds(), CValidError_imp::ValidateAuthorList(), CAsnvalApp::ValidateOneDirectory(), CJob::x_AppendReadExpiration(), CJob::x_AppendRunExpiration(), CJob::x_AppendSubmitNotifExpiration(), CAuthor::x_ConvertMlToStandard(), CFeatureItem::x_FormatGOQualCombined(), CFeatureItem::x_FormatNoteQuals(), CSourceFeatureItem::x_FormatNoteQuals(), CCommentItem::x_GatherDescInfo(), CAuthor::x_GetLabelV2(), CFastaOstreamComp::x_GetNewFilename(), CSeqTechDlg::x_GetSeqTechUserFromSeqEntry(), CTableColumnTypeGuesser::x_GuessType(), CESearchParser< T >::x_IsSuffix(), CWriteDB_IndexFile::x_MakeLmdbName(), SNSCommandArguments::x_NormalizeErrorMessage(), CNetScheduleHandler::x_OnCmdParserError(), CCleanupApp::x_ProcessOneDirectory(), CCommentItem::x_SetCommentWithURLlinks(), CDeflineGenerator::x_SetSuffix(), CSingleFeatValidator::x_ValidateBothStrands(), CValidError_desc::x_ValidateStructuredCommentSuffix(), CGtfWriter::xAssignFeatureAttributeGeneId(), CGtfWriter::xAssignFeatureAttributeTranscriptId(), CGffIdGenerator::xDisambiguate(), CFeatTableEdit::xGetCurrentLocusTagPrefix(), CFeatTableEdit::xNextFeatId(), CFeatTableEdit::xNextLocusTag(), CFeatTableEdit::xNextProteinId(), and CFeatTableEdit::xNextTranscriptId().

sys_errlist

char* sys_errlist[]

extern

Referenced by strerror().

sys_nerr

int sys_nerr

extern

Referenced by strerror().

utf8

BOOL utf8 = 0

static

Definition at line 199 of file pcregrep.c.

Referenced by end_of_line(), handle_option(), main(), pcregrep(), previous_line(), and utf8_to_string().

utf8_table3

const int utf8_table3[] = { 0xff, 0x1f, 0x0f, 0x07, 0x03, 0x01}

Definition at line 413 of file pcregrep.c.

Referenced by end_of_line(), previous_line(), and print_char().

utf8_table4

const char utf8_table4[]

Initial value:

= {
  1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,
  1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,
  2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,
  3,3,3,3,3,3,3,3,4,4,4,4,5,5,5,5 }

Definition at line 415 of file pcregrep.c.

Referenced by _pcre_valid_utf(), end_of_line(), previous_line(), and print_char().