Search Toolkit Book for CCdregion
#include <objects/seqfeat/Cdregion.hpp>
Inheritance diagram for CCdregion:
Collaboration diagram for CCdregion:
Public Member Functions | |
| CCdregion (void) | |
| ~CCdregion (void) | |
| Public Member Functions inherited from CCdregion_Base | |
| CCdregion_Base (void) | |
| virtual | ~CCdregion_Base (void) |
| DECLARE_INTERNAL_TYPE_INFO () | |
| bool | IsSetOrf (void) const |
| just an ORF ? Check if a value has been assigned to Orf data member. More... | |
| bool | CanGetOrf (void) const |
| Check if it is safe to call GetOrf method. More... | |
| void | ResetOrf (void) |
| Reset Orf data member. More... | |
| TOrf | GetOrf (void) const |
| Get the Orf member data. More... | |
| void | SetOrf (TOrf value) |
| Assign a value to Orf data member. More... | |
| TOrf & | SetOrf (void) |
| Assign a value to Orf data member. More... | |
| bool | IsSetFrame (void) const |
| Check if a value has been assigned to Frame data member. More... | |
| bool | CanGetFrame (void) const |
| Check if it is safe to call GetFrame method. More... | |
| void | ResetFrame (void) |
| Reset Frame data member. More... | |
| void | SetDefaultFrame (void) |
| Assign default value to Frame data member. More... | |
| TFrame | GetFrame (void) const |
| Get the Frame member data. More... | |
| void | SetFrame (TFrame value) |
| Assign a value to Frame data member. More... | |
| TFrame & | SetFrame (void) |
| Assign a value to Frame data member. More... | |
| bool | IsSetConflict (void) const |
| conflict Check if a value has been assigned to Conflict data member. More... | |
| bool | CanGetConflict (void) const |
| Check if it is safe to call GetConflict method. More... | |
| void | ResetConflict (void) |
| Reset Conflict data member. More... | |
| TConflict | GetConflict (void) const |
| Get the Conflict member data. More... | |
| void | SetConflict (TConflict value) |
| Assign a value to Conflict data member. More... | |
| TConflict & | SetConflict (void) |
| Assign a value to Conflict data member. More... | |
| bool | IsSetGaps (void) const |
| number of gaps on conflict/except Check if a value has been assigned to Gaps data member. More... | |
| bool | CanGetGaps (void) const |
| Check if it is safe to call GetGaps method. More... | |
| void | ResetGaps (void) |
| Reset Gaps data member. More... | |
| TGaps | GetGaps (void) const |
| Get the Gaps member data. More... | |
| void | SetGaps (TGaps value) |
| Assign a value to Gaps data member. More... | |
| TGaps & | SetGaps (void) |
| Assign a value to Gaps data member. More... | |
| bool | IsSetMismatch (void) const |
| number of mismatches on above Check if a value has been assigned to Mismatch data member. More... | |
| bool | CanGetMismatch (void) const |
| Check if it is safe to call GetMismatch method. More... | |
| void | ResetMismatch (void) |
| Reset Mismatch data member. More... | |
| TMismatch | GetMismatch (void) const |
| Get the Mismatch member data. More... | |
| void | SetMismatch (TMismatch value) |
| Assign a value to Mismatch data member. More... | |
| TMismatch & | SetMismatch (void) |
| Assign a value to Mismatch data member. More... | |
| bool | IsSetCode (void) const |
| genetic code used Check if a value has been assigned to Code data member. More... | |
| bool | CanGetCode (void) const |
| Check if it is safe to call GetCode method. More... | |
| void | ResetCode (void) |
| Reset Code data member. More... | |
| const TCode & | GetCode (void) const |
| Get the Code member data. More... | |
| void | SetCode (TCode &value) |
| Assign a value to Code data member. More... | |
| TCode & | SetCode (void) |
| Assign a value to Code data member. More... | |
| bool | IsSetCode_break (void) const |
| individual exceptions Check if a value has been assigned to Code_break data member. More... | |
| bool | CanGetCode_break (void) const |
| Check if it is safe to call GetCode_break method. More... | |
| void | ResetCode_break (void) |
| Reset Code_break data member. More... | |
| const TCode_break & | GetCode_break (void) const |
| Get the Code_break member data. More... | |
| TCode_break & | SetCode_break (void) |
| Assign a value to Code_break data member. More... | |
| bool | IsSetStops (void) const |
| number of stop codons on above Check if a value has been assigned to Stops data member. More... | |
| bool | CanGetStops (void) const |
| Check if it is safe to call GetStops method. More... | |
| void | ResetStops (void) |
| Reset Stops data member. More... | |
| TStops | GetStops (void) const |
| Get the Stops member data. More... | |
| void | SetStops (TStops value) |
| Assign a value to Stops data member. More... | |
| TStops & | SetStops (void) |
| Assign a value to Stops data member. More... | |
| virtual void | Reset (void) |
| Reset the whole object. More... | |
| Public Member Functions inherited from CSerialObject | |
| CSerialObject (void) | |
| virtual | ~CSerialObject (void) |
| virtual const CTypeInfo * | GetThisTypeInfo (void) const =0 |
| virtual void | Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) |
| Set object to copy of another one. More... | |
| virtual bool | Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const |
| Check if both objects contain the same values. More... | |
| virtual void | DebugDump (CDebugDumpContext ddc, unsigned int depth) const |
| Define method for dumping debug information. More... | |
| void | ThrowUnassigned (TMemberIndex index) const |
| void | ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const |
| bool | HasNamespaceName (void) const |
| Check if object data type has namespace name. More... | |
| const string & | GetNamespaceName (void) const |
| Get namespace name. More... | |
| bool | HasNamespacePrefix (void) const |
| Check if data type has namespace prefix. More... | |
| const string & | GetNamespacePrefix (void) const |
| Get namespace prefix. More... | |
| Public Member Functions inherited from CObject | |
| CObject (void) | |
| Constructor. More... | |
| CObject (const CObject &src) | |
| Copy constructor. More... | |
| virtual | ~CObject (void) |
| Destructor. More... | |
| CObject & | operator= (const CObject &src) THROWS_NONE |
| Assignment operator. More... | |
| bool | CanBeDeleted (void) const THROWS_NONE |
| Check if object can be deleted. More... | |
| bool | IsAllocatedInPool (void) const THROWS_NONE |
| Check if object is allocated in memory pool (not system heap) More... | |
| bool | Referenced (void) const THROWS_NONE |
| Check if object is referenced. More... | |
| bool | ReferencedOnlyOnce (void) const THROWS_NONE |
| Check if object is referenced only once. More... | |
| void | AddReference (void) const |
| Add reference to object. More... | |
| void | RemoveReference (void) const |
| Remove reference to object. More... | |
| void | ReleaseReference (void) const |
| Remove reference without deleting object. More... | |
| virtual void | DoNotDeleteThisObject (void) |
| Mark this object as not allocated in heap – do not delete this object. More... | |
| virtual void | DoDeleteThisObject (void) |
| Mark this object as allocated in heap – object can be deleted. More... | |
| void * | operator new (size_t size) |
| Define new operator for memory allocation. More... | |
| void * | operator new[] (size_t size) |
| Define new[] operator for 'array' memory allocation. More... | |
| void | operator delete (void *ptr) |
| Define delete operator for memory deallocation. More... | |
| void | operator delete[] (void *ptr) |
| Define delete[] operator for memory deallocation. More... | |
| void * | operator new (size_t size, void *place) |
| Define new operator. More... | |
| void | operator delete (void *ptr, void *place) |
| Define delete operator. More... | |
| void * | operator new (size_t size, CObjectMemoryPool *place) |
| Define new operator using memory pool. More... | |
| void | operator delete (void *ptr, CObjectMemoryPool *place) |
| Define delete operator. More... | |
| Public Member Functions inherited from CDebugDumpable | |
| CDebugDumpable (void) | |
| virtual | ~CDebugDumpable (void) |
| void | DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const |
| void | DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const |
| void | DumpToConsole (void) const |
Private Types | |
| typedef CCdregion_Base | Tparent |
Private Member Functions | |
| CCdregion (const CCdregion &value) | |
| CCdregion & | operator= (const CCdregion &value) |
Additional Inherited Members | |
| Public Types inherited from CCdregion_Base | |
| enum | EFrame { eFrame_not_set = 0 , eFrame_one = 1 , eFrame_two = 2 , eFrame_three = 3 } |
| enum class | E_memberIndex { e__allMandatory = 0 , e_orf , e_frame , e_conflict , e_gaps , e_mismatch , e_code , e_code_break , e_stops } |
| typedef bool | TOrf |
| typedef EFrame | TFrame |
| typedef bool | TConflict |
| typedef TSeqPos | TGaps |
| typedef TSeqPos | TMismatch |
| typedef CGenetic_code | TCode |
| typedef list< CRef< CCode_break > > | TCode_break |
| typedef TSeqPos | TStops |
| typedef Tparent::CMemberIndex< E_memberIndex, 9 > | TmemberIndex |
| Public Types inherited from CObject | |
| enum | EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern } |
| Control filling of newly allocated memory. More... | |
| typedef CObjectCounterLocker | TLockerType |
| Default locker type for CRef. More... | |
| typedef atomic< Uint8 > | TCounter |
| Counter type is CAtomiCounter. More... | |
| typedef Uint8 | TCount |
| Alias for value type of counter. More... | |
| Static Public Member Functions inherited from CCdregion_Base | |
| static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() | EFrame (void) |
| Access to EFrame's attributes (values, names) as defined in spec. More... | |
| Static Public Member Functions inherited from CSerialObject | |
| static void | SetVerifyDataThread (ESerialVerifyData verify) |
| static void | SetVerifyDataGlobal (ESerialVerifyData verify) |
| static string | UnassignedString (void) |
| static CStringUTF8 | UnassignedStringUTF8 (void) |
| static char | UnassignedByte (void) |
| Static Public Member Functions inherited from CObject | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (void) |
| Define method to throw null pointer exception. More... | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (const type_info &type) |
| static EAllocFillMode | GetAllocFillMode (void) |
| static void | SetAllocFillMode (EAllocFillMode mode) |
| static void | SetAllocFillMode (const string &value) |
| Set mode from configuration parameter value. More... | |
| Static Public Member Functions inherited from CDebugDumpable | |
| static void | EnableDebugDump (bool on) |
| Static Public Attributes inherited from CSerialObject | |
| static const char * | ms_UnassignedStr = "<*unassigned*>" |
| static const char | ms_UnassignedByte = char(0xcd) |
| Static Public Attributes inherited from CObject | |
| static const TCount | eCounterBitsCanBeDeleted = 1 << 0 |
| Define possible object states. More... | |
| static const TCount | eCounterBitsInPlainHeap = 1 << 1 |
| Heap signature was found. More... | |
| static const TCount | eCounterBitsPlaceMask |
| Mask for 'in heap' state flags. More... | |
| static const int | eCounterStep = 1 << 2 |
| Skip over the "in heap" bits. More... | |
| static const TCount | eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2) |
| Minimal value for valid objects (reference counter is zero) Must be a single bit value. More... | |
| static const TCount | eCounterStateMask |
| Valid object, and object in heap. More... | |
| Protected Member Functions inherited from CObject | |
| virtual void | DeleteThis (void) |
| Virtual method "deleting" this object. More... | |
Detailed Description
CCdregion –.
Definition at line 65 of file Cdregion.hpp.
The documentation for this class was generated from the following files:
- include/objects/seqfeat/Cdregion.hpp
- src/objects/seqfeat/Cdregion.cpp
