Search Toolkit Book for CGffBaseRecord

#include <objtools/writers/gff_base_record.hpp>

Inheritance diagram for CGffBaseRecord:

Collaboration diagram for CGffBaseRecord:

Public Types
typedef map< string, vector< string > >	TAttributes

typedef TAttributes::iterator	TAttrIt

typedef TAttributes::const_iterator	TAttrCit

typedef map< string, string >	TScores

typedef TScores::iterator	TScoreIt

typedef TScores::const_iterator	TScoreCit

Public Types inherited from CObject
enum	EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
	Control filling of newly allocated memory. More...

typedef CObjectCounterLocker	TLockerType
	Default locker type for CRef. More...

typedef atomic< Uint8 >	TCounter
	Counter type is CAtomiCounter. More...

typedef Uint8	TCount
	Alias for value type of counter. More...

Public Member Functions
	CGffBaseRecord (const string &id="")

	CGffBaseRecord (const CGffBaseRecord &)

virtual	~CGffBaseRecord ()

const TAttributes &	Attributes () const

bool	AddAttribute (const string &, const string &)

bool	AddAttributes (const string &, const vector< string > &)

bool	SetAttribute (const string &, const string &)

bool	SetAttributes (const string &, const vector< string > &)

bool	GetAttributes (const string &, vector< string > &) const

bool	DropAttributes (const string &)

void	SetSeqId (const string &)

void	SetMethod (const string &)

void	SetType (const string &)

void	SetLocation (unsigned int, unsigned int, ENa_strand=objects::eNa_strand_unknown)

void	SetStrand (ENa_strand)

void	SetScore (const CScore &)

void	SetScore (const std::string &)

void	SetPhase (unsigned int)

virtual string	StrSeqId () const

virtual string	StrMethod () const

virtual string	StrType () const

virtual string	StrSeqStart () const

virtual string	StrSeqStop () const

virtual string	StrStrand () const

virtual string	StrScore () const

virtual string	StrPhase () const

virtual string	StrAttributes () const

bool	CanGetLocation () const

const CSeq_loc &	GetLocation () const

unsigned int	SeqStart () const

unsigned int	SeqStop () const

objects::ENa_strand	SeqStrand () const

Public Member Functions inherited from CObject
	CObject (void)
	Constructor. More...

	CObject (const CObject &src)
	Copy constructor. More...

virtual	~CObject (void)
	Destructor. More...

CObject &	operator= (const CObject &src) THROWS_NONE
	Assignment operator. More...

bool	CanBeDeleted (void) const THROWS_NONE
	Check if object can be deleted. More...

bool	IsAllocatedInPool (void) const THROWS_NONE
	Check if object is allocated in memory pool (not system heap) More...

bool	Referenced (void) const THROWS_NONE
	Check if object is referenced. More...

bool	ReferencedOnlyOnce (void) const THROWS_NONE
	Check if object is referenced only once. More...

void	AddReference (void) const
	Add reference to object. More...

void	RemoveReference (void) const
	Remove reference to object. More...

void	ReleaseReference (void) const
	Remove reference without deleting object. More...

virtual void	DoNotDeleteThisObject (void)
	Mark this object as not allocated in heap – do not delete this object. More...

virtual void	DoDeleteThisObject (void)
	Mark this object as allocated in heap – object can be deleted. More...

void *	operator new (size_t size)
	Define new operator for memory allocation. More...

void *	operator new[] (size_t size)
	Define new[] operator for 'array' memory allocation. More...

void	operator delete (void *ptr)
	Define delete operator for memory deallocation. More...

void	operator delete[] (void *ptr)
	Define delete[] operator for memory deallocation. More...

void *	operator new (size_t size, void *place)
	Define new operator. More...

void	operator delete (void ptr, void place)
	Define delete operator. More...

void *	operator new (size_t size, CObjectMemoryPool *place)
	Define new operator using memory pool. More...

void	operator delete (void ptr, CObjectMemoryPool place)
	Define delete operator. More...

virtual void	DebugDump (CDebugDumpContext ddc, unsigned int depth) const
	Define method for dumping debug information. More...

Public Member Functions inherited from CDebugDumpable
	CDebugDumpable (void)

virtual	~CDebugDumpable (void)

void	DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const

void	DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const

void	DumpToConsole (void) const

Protected Member Functions
const string &	xEscapedValue (const string &key, const string &value) const

const string &	xEscapedString (const string &value) const

Protected Member Functions inherited from CObject
virtual void	DeleteThis (void)
	Virtual method "deleting" this object. More...

Protected Attributes
CRef< CSeq_loc >	m_pLoc

string	mSeqId

string	mType

string	mMethod

unsigned int	mSeqStart

unsigned int	mSeqStop

string	mScore

string	mStrand

optional< int >	mPhase

TAttributes	mAttributes

TScores	mExtraScores

Static Protected Attributes
static const char *	ATTR_SEPARATOR = ";"

Additional Inherited Members
Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (void)
	Define method to throw null pointer exception. More...

static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (const type_info &type)

static EAllocFillMode	GetAllocFillMode (void)

static void	SetAllocFillMode (EAllocFillMode mode)

static void	SetAllocFillMode (const string &value)
	Set mode from configuration parameter value. More...

Static Public Member Functions inherited from CDebugDumpable
static void	EnableDebugDump (bool on)

Static Public Attributes inherited from CObject
static const TCount	eCounterBitsCanBeDeleted = 1 << 0
	Define possible object states. More...

static const TCount	eCounterBitsInPlainHeap = 1 << 1
	Heap signature was found. More...

static const TCount	eCounterBitsPlaceMask
	Mask for 'in heap' state flags. More...

static const int	eCounterStep = 1 << 2
	Skip over the "in heap" bits. More...

static const TCount	eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
	Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...

static const TCount	eCounterStateMask
	Valid object, and object in heap. More...