Search Toolkit Book for map_checker
#include <util/debug/map.hpp>
Collaboration diagram for map_checker< Container >:
Public Types | |
| typedef container_type::size_type | size_type |
| typedef container_type::key_type | key_type |
| typedef container_type::value_type | value_type |
| typedef container_type::const_iterator | const_iterator |
| typedef container_type::iterator | iterator |
Protected Types | |
| typedef pair< const_iterator, const_iterator > | const_iterator_pair |
| typedef pair< iterator, iterator > | iterator_pair |
| typedef pair< iterator, bool > | iterator_bool |
Protected Attributes | |
| container_type | m_Container |
| CAtomicCounter_WithAutoInit | m_WCounter |
| CAtomicCounter_WithAutoInit | m_RCounter |
Private Types | |
| typedef Container | container_type |
| typedef map_checker< Container > | this_type |
Detailed Description
Member Typedef Documentation
◆ const_iterator
| typedef container_type::const_iterator map_checker< Container >::const_iterator |
◆ const_iterator_pair
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protected |
◆ container_type
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◆ iterator
| typedef container_type::iterator map_checker< Container >::iterator |
◆ iterator_bool
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◆ iterator_pair
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◆ key_type
| typedef container_type::key_type map_checker< Container >::key_type |
◆ size_type
| typedef container_type::size_type map_checker< Container >::size_type |
◆ this_type
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private |
◆ value_type
| typedef container_type::value_type map_checker< Container >::value_type |
Constructor & Destructor Documentation
◆ map_checker() [1/2]
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◆ ~map_checker()
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◆ map_checker() [2/2]
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Member Function Documentation
◆ begin() [1/2]
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◆ begin() [2/2]
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Definition at line 151 of file map.hpp.
Referenced by CRangeUnion< CBGZFPos >::add_range(), CAlignCollapser::AddAlignment(), CLDS2_ObjectParser::AddAnnot(), CLabelDescriptionCacheImpl::AddCaches(), CTrackContainer::AddTracks(), ResidueProfiles::adjustConsensusAndGuide(), CQueueDataBase::AnyJobs(), CSymResolver::Append(), AppendChildrenToTree(), CEditSelectedGaps::apply_impl(), CAddCitSubForUpdate::ApplyToCSeq_entry(), CCdsMatchInfo::AssignOverlapMatch(), CWriteDB_PackedSemiTree::Begin(), CRangeUnion< CBGZFPos >::begin(), CLadderContainer::Begin(), CPhyTreeLabelTracker::Begin(), CHandleRangeMap::begin(), CTSE_LockSet::begin(), CAnnotPieces::begin(), CSeqsRange::begin(), BlastKmerGetKmerSetStats(), BOOST_AUTO_TEST_CASE(), WSDLParser::BuildDataTree(), CCompactLayout::BuildLayout(), ResidueProfiles::calcInformationContent(), CSGAlignmentDS::CalculateAlignmentScore(), ResidueProfiles::calculateRowWeights(), CQueueDataBase::CalculateRuntimePrecision(), CAlignDistGraph::CAlignDistGraph(), CChangeStructuredCommentKeyword::CChangeStructuredCommentKeyword(), CGff2Record::CGff2Record(), CGffBaseRecord::CGffBaseRecord(), CAgpValidateReader::CIdsNotInAgp::CheckIds(), CNSScopeRegistry::CheckRemoveCandidates(), CHttpCookie_CI::CHttpCookie_CI(), CAlignCollapser::CleanSelfTranscript(), CNSAffinityRegistry::Clear(), CNSGroupsRegistry::Clear(), CStatement::ClearParamList(), SeqTree::clearTaxSelection(), CChain::ClipToPolyA(), WSDLParser::CollectDataObjects(), CMsvcPrjFilesCollector::CollectExtra(), CNSScopeRegistry::CollectGarbage(), CSampleEditSaver::CommitTransaction(), CSeqsRange::Compare(), CSGConfigUtils::ComposeProfileString(), SQueueParameters::ConfigSection(), CTableImportDataSource::ConvertToSeqAnnot(), CQueueDataBase::CountActiveJobs(), CQueueDataBase::CountAllJobs(), CMolInfoEditDlg::CreateControls(), CRemoveDescDlg::CreateControls(), CNonAsciiCharacterReplacement::CreateControls(), SRemoteApp::SRequest::CreateFilesNode(), CFeatureGenerator::CreateMicroIntrons(), CPageList::CreateSubNodes(), CSequenceTrackFactory::CreateTracks(), CGeneModelFactory::CreateTracks(), DeleteElements(), TaxTreeData::deselectAllTaxNodes(), SQueueParameters::Diff(), HitDistributor::distribute(), SMakeProjectT::DoResolveDefs(), COpenViewManager::DoTransition(), CChainer::DropAlignmentInfo(), CNSAffinityRegistry::Dump(), CNSGroupsRegistry::Dump(), HitDistributor::dump(), CReadBlastApp::erase_problems(), CStatement::ExecuteLast(), CAlignCollapser::FillGapsInAlignmentAndAddToGenomicGaps(), CAlignCollapser::FilterAlignments(), CNSAffinityRegistry::FinalizeAffinityDictionaryLoading(), CNSGroupsRegistry::FinalizeGroupDictionaryLoading(), CPriorityTaxNodes::findAncestor(), CSeqTranslator::FindBestFrame(), COrgMod::FindInstitutionCode(), COrgRefCache::FindNameClassByName(), CChainer::FindSelenoproteinsClipProteinsToStartStop(), COrgMod::FixStructuredVoucher(), CBlastMasterNode::FormatResults(), g_GetIntersection(), SRemoteNodeData::GCBlacklist(), CNSClientsRegistry::GCBlacklistedJobs(), DTDParser::GenerateDataTree(), CProjBulderApp::GenerateMsvcProjects(), CRegExFSA::GenerateSourceCode(), CProjBulderApp::GenerateUnixProjects(), CBinaryRangeCacheWithLock< Position, Value >::get_lock(), IEditingAction::GetActionCommand(), CCommandArgDescriptions::GetAllDescriptions(), CBlastTabularInfo::GetAllFieldNames(), SeqItem::getAllSelectedInstances(), SBamIndexRefIndex::GetAlnOverStarts(), CSGSegmentSmearJob::GetAnnotNames(), GetBiosampleStatus(), CGBDataLoader_Native::GetChunks(), CAlignCollapser::GetCollapsedAlgnments(), CPhyloTreeDataSource::GetColumnLabel(), CDataMiningService::GetDefaultToolName(), CHistogramGlyph::GetDensityMap(), CTreeQueryExec::GetFeatureIdNoCase(), CTreeQueryExec::GetFunctionNames(), CGridCgiContext::GetHiddenFields(), CHistogramGlyph::GetHTMLActiveAreas(), CNSScopeRegistry::GetJobScope(), SeqTree::getLeafById(), CSeqMapSwitchPoint::GetLeftInPlaceInsert(), CQueueDataBase::GetLinkedSectionConfig(), CQueue::GetLinkedSections(), CGuiObjectInfoComponent::GetLinks(), CGuiObjectInfoSeq_feat::GetLinks(), CGuiObjectInfoVariant::GetLinks(), CNSClientsRegistry::GetNodeName(), CQueueDataBase::GetPauseQueues(), CQueueDataBase::GetQueueClassesConfig(), CQueueDataBase::GetQueueClassesInfo(), CQueueDataBase::GetQueueConfig(), CQueueDataBase::GetQueueInfo(), CQueueDataBase::GetQueueNames(), CQueueDataBase::GetRefuseSubmitQueues(), CSeqMapSwitchPoint::GetRightInPlaceInsert(), CNSScopeRegistry::GetScopeNames(), CConversionResultPanel::GetSelectedIndices(), CConversionResultPanel::GetSelection(), TaxTreeData::getSelections(), CGridCgiContext::GetSelfURL(), CDBUDPriorityMapper::GetServerOptions(), CNetScheduleServer::GetServiceToQueueSectionConfig(), CSeqsRange::GetSingleId(), CLocalBlastDbAdapter::GetTaxId(), CHistogramGlyph::GetTitle(), CStdAnnotTypes::GetTypeAsInt(), CNSAlerts::GetURLEncoded(), SBDB_CacheStatistics::Init(), CCdDbPriority::Initialize(), CMultAlign::InsertDashesInBase(), CNWFormatter::SSegment::IsLowComplexityExon(), CStdAnnotTypes::IsPredefinedDescr(), CStdAnnotTypes::IsValidTypeStr(), CProjBulderApp::LoadDepGraph(), CChain::MainPeaks(), CGtfRecord::MakeChildRecord(), ResidueProfiles::makeConsensus(), MakePluginManagerParamTree(), CGnomonAnnotator_Base::MapModelsToOrigContig(), CGnomonAnnotator_Base::MapOneModelToOrigContig(), AlignmentCollection::mapRows(), MostFrequentGapSize(), CNSClientsRegistry::MoveJobToBlacklist(), neighbor_query(), CCompareWithBiosample::OnClickOk(), CMacroFlowEditor::OnDuplicateClick(), CFarPointerSeq::OnExport(), CMacroFlowEditor::OnManualEditMacro(), CMacroFlowEditor::OnPasteClick(), CFileSubpanel::OnSelectButton(), CFieldSubpanel::OnSelectButton(), CMolInfoSubpanel::OnSelectButton(), CApplyEditconvertPanel::OnUndoButtonClick(), CAnnotObject_Less::operator()(), CAnnotObject_LessReverse::operator()(), CScoreVector< Key, Score >::operator-=(), operator==(), CSeq_annot_SNP_Info_Reader::ParseAnnot(), CFastaReader::ParseGapLine(), STrackSettings::ParseSettings(), CChain::PeaksAndLimits(), CEditingBtnsPanel::PlaceButtons(), CCgi2RCgiApp::PopulatePage(), SGFFrec::print(), CSeqsRange::Print(), CQueueDataBase::PrintJobCounters(), CQueueDataBase::PrintJobsStat(), CDataTypeModule::PrintSampleDEF(), CNCPeerControl::PrintState(), CQueueDataBase::PrintStatistics(), CNCPeerControl::PrintSyncStat(), CNCStat::PrintToSocket(), CQueueDataBase::PrintTransitionCounters(), CArgDependencyGroup::PrintUsage(), CCommandArgDescriptions::PrintUsage(), CCommandArgDescriptions::PrintUsageXml(), CArgDependencyGroup::PrintUsageXml(), CProjectTreeBuilder::ProcessDir(), WSDLParser::ProcessEndpointTypes(), XSDParser::ProcessNamedTypes(), CReportNode::Promote(), CBLASTToolManager::QuickLaunch(), CProjBulderApp::RankDepGraph(), CNSTServiceRegistry::ReadConfiguration(), SQueueParameters::ReadLinkedSections(), SQueueParameters::ReadQueue(), CReadBlastApp::ReadRRNA2(), CNetScheduleServer::ReadServicesConfig(), CNCDistributionConf::ReConfig(), CNCPeriodicSync::ReConfig(), SeqTreeAsnizer::refillAsnMembership(), CWriteObjectList::RegisterObject(), CNSScopeRegistry::RemoveJob(), CEventHandler::RemoveListener(), CCgiSession_NetCache::Reset(), CScope_Impl::ResetScope(), SeqTreeAsnizer::resolveRowId(), CNetScheduleServer::ResolveService(), CTbl2AsnApp::Run(), CAgpFastaComparator::Run(), s_AddProjItemToDll(), s_CompareEvents(), s_CompareOverlapping(), s_EquivalentExts(), s_EquivalentScores(), s_ExpandSubNodes(), s_GetBlobs(), s_InitFeatures(), s_ShouldFetchOneByOne(), SComparison::SComparison(), SeqItem::select(), SeqTree::selectByRowID(), CScriptPanel::SelectMacros(), CGff3LocationMerger::SequenceSize(), CNSTAlerts::Serialize(), CNSTClientRegistry::Serialize(), CNSTServiceRegistry::Serialize(), SerializePauseState(), SeqTree::setMembershipColor(), CConversionResultPanel::SetObjects(), TaxonomyTree::ShowTreeForAlignment(), CNSClientsRegistry::StaleNodes(), CReadBlastApp::StoreBlast(), CGffBaseRecord::StrAttributes(), CGtfRecord::StrAttributes(), CGvfWriteRecord::StrAttributes(), CDiscrepancyVisitorImpl< _Name >::Summarize(), CObjectListWidgetSel::TransferDataToWindow(), ResidueProfiles::traverseAlignedColumns(), ResidueProfiles::traverseAllColumns(), TraverseAndRunTestCases(), ResidueProfiles::traverseColumnsOnConsensus(), ResidueProfiles::traverseColumnsOnMaster(), CChainer::CChainerImpl::TrimAlignmentsIncludedInDifferentGenes(), CColumnValidatorRegistry::UnRegister(), CNSClientsRegistry::UnregisterJob(), CMacroFlowEditor::UpdateEditedMacro(), CRBSubpanel::UpdateList(), CMultAlign::Variations(), CProjectItemsTree::VerifyDataspecProj(), CMakeProject::Write(), CAsnSubCacheCreateApplication::WriteBlobsInSubCache(), CNCBlobStorage::WriteBlobStat(), CNCBlobStorage::WriteDbInfo(), TaxTreeData::writeOutRanks(), CSeq_annot_Info::x_AddAlignKeys(), CFastaReader::x_AddMultiwayAlignment(), CFastaReader::x_AddPairwiseAlignments(), CNSClientsRegistry::x_BuildAffinities(), CNCActiveSyncControl::x_CleanSyncObjects(), CTreeQueryExec::x_ClearBuiltInFunctions(), CScope_Impl::x_ClearCacheOnEdit(), CScope_Impl::x_ClearCacheOnNewData(), CScope_Impl::x_ClearCacheOnRemoveData(), CPhyTreeNodeAnalyzer::x_CombineNodeMaps(), CQueueDataBase::x_ConfigureQueueClasses(), CQueueDataBase::x_ConfigureQueues(), CFeaturePanel::x_ConfigureSubtracks(), CAlnMixSegments::x_ConsolidateGaps(), CMatchesListCtrl::x_ConvertAllToByLocation(), CQueueDataBase::x_CountQueuesToAdd(), CFeaturePanel::x_CreateLevelTrack(), CQueueDataBase::x_DeleteQueuesAndClasses(), CBlobCacher::x_DelFileAndRetryCreate(), CQueueDataBase::x_DetectChangesInLinkedSection(), CQueueDataBase::x_Dump(), CQueueDataBase::x_DumpLinkedSection(), CQueueDataBase::x_DumpQueueOrClass(), CAsnSubCacheCreateApplication::x_EliminateIdsAlreadyInCache(), CArgDependencyGroup::x_Evaluate(), CVectorTrimPanel::x_FindCompleteDeletions(), CTaxValidationAndCleanup::x_FindHostFixRequest(), CQualLookupMap::x_FindRequest(), CBulkCleaner::x_FinishSession(), CCreateGeneModelTask::x_GetCommand(), CQueueDataBase::x_GetFirst(), CDiagConsoleCache::x_GetItem(), CQueueDataBase::x_GetLastPurged(), CQueueDataBase::x_GetNext(), CQueueDataBase::x_GetQueueAt(), CGridWidget::x_GetRectSelection(), CNetScheduleHandler::x_GetStoredSectionValues(), CTSE_Info::x_GetUnnamedAnnotObjs(), CDataTypeModule::x_GetVar(), CTSE_Split_Info::x_HasDelayedMainChunk(), CCommandArgDescriptions::x_IdentifyCommand(), CUnicodeToAsciiTranslation::x_Initialize(), CTSE_Split_Info::x_LoadDelayedMainChunk(), CAlnMixMerger::x_Merge(), CGff2Reader::x_MergeAlignments(), CTSE_Split_Info::x_NeedsDelayedMainChunk(), CTrackContainer::x_OnJobCompleted(), CSeqGraphicPane::x_OnPurgeMarkers(), CQueueDataBase::x_Open(), CNCActiveSyncControl::x_PrepareSyncByBlobs(), CPhyTreeNodeAnalyzer::x_PrintNodeMap(), CNSClientsRegistry::x_PrintSelected(), CNSAffinityRegistry::x_PrintSelected(), CNSGroupsRegistry::x_PrintSelected(), CAgpValidateReader::x_PrintTotals(), CNetScheduleHandler::x_ProcessGetParam(), CNetStorageHandler::x_ProcessHealth(), CNetScheduleHandler::x_ProcessQueueInfo(), CNetScheduleHandler::x_ProcessStatistics(), CCleanupHugeAsnReader::x_PruneAndReorderTopIds(), CCleanupHugeAsnReader::x_PruneIfFeatsIncomplete(), CNSClientsRegistry::x_PurgeInactiveClients(), CAlnMultiRenderer::x_PurgeRowListMap(), CNSClientsRegistry::x_PurgeWNodesAndReaders(), CSeq_loc_Mapper_Base::x_PushMappedRange(), CQueueDataBase::x_ReadLinkedSections(), CTrackContainer::x_ReinitNATrack(), CAgpValidateApplication::x_ReportFastaSeqCount(), CQueueDataBase::x_RestorePauseState(), CTSE_ScopeInfo::x_SaveRemoved(), CAlnMixMerger::x_SecondRowFits(), CBLASTToolManager::x_SelectCompatibleInputObjects(), CBioseq_set_Info::x_SetChunkBioseqs2(), CMappingObjectLoader::x_ShowMappingDlg(), CAssemblyInfo::x_SortAssms(), CSGFeatureJob::x_SortFeature_recursive(), CBlobCacher::x_StartCacheBlobs(), CBlobCacher::x_StartCaching(), CAlignTabExportPage2::x_StartNAAlignNamesJob(), CBulkCleaner::x_StartSession(), CVectorTrimPanel::x_TrimAlignments(), CVectorTrimPanel::x_TrimSelected(), CVectorTrimPanel::x_TrimSeqGraphs(), CSNPDb_Impl::x_Update(), CRawSeqToDeltaSeqByLoc::x_UpdateRows(), CTaxValidationAndCleanup::x_UpdateSpecificHostMapWithReply(), CQueueDataBase::x_ValidateConfiguration(), CFastaOstream::x_WriteSequence(), CGvfReader::xFeatureSetExt(), CSrcWriter::xFormatTabDelimited(), CGff2Record::xMigrateAttributes(), CFeatTableEdit::xRenameFeatureId(), CHTMLBasicPage::~CHTMLBasicPage(), CMacroEngine::~CMacroEngine(), CNRCriteria::~CNRCriteria(), CObjectManager::~CObjectManager(), CTaxFormat::~CTaxFormat(), FileMessenger::~FileMessenger(), and IMacroFunctionContext::~IMacroFunctionContext().
◆ check()
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◆ clear()
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Definition at line 169 of file map.hpp.
Referenced by CMacroCompoundConstraintPanel::AddConstraint(), CSimpleMakeFileContents::AddReadyKV(), CTrackContainer::AddTracks(), ResidueProfiles::adjustConsensusAndGuide(), CMsvcConfigure::AnalyzeDefines(), CSymResolver::Append(), CTaxNRCriteria::Apply(), CRepeatToFeat::AssertReferencesResolved(), CHttpHeaders::Assign(), CFileDBEngine::BeginTransaction(), BOOST_AUTO_TEST_CASE(), CSGAlignmentDS::CalculateAlignmentScore(), CHttpCookies::Cleanup(), CBioTreeFeatureDictionary::Clear(), CReverseObjectStore< TKey, TObject >::Clear(), CUIToolRegistry::Clear(), CGridCgiContext::Clear(), variation::CVariationUtil::CCdregionIndex::Clear(), variation::CVariationUtil::CVariantPropertiesIndex::Clear(), CPSGMessages::Clear(), CValidator::CCacheImpl::Clear(), CQualLookupMap::Clear(), CRangeUnion< CBGZFPos >::clear(), CReportNode::clear(), CRR_MetaInfo< TTraits >::Clear(), CObjectIndex::Clear(), CDeleteQueue< const CTSE_ScopeInfo *, CTSE_ScopeInternalLock >::Clear(), CGapAnalysis::clear(), CHttpFormData::Clear(), CPageStat::Clear(), CHandleRangeMap::clear(), CTSE_LockSet::clear(), CAnnotPieces::clear(), CSeqsRange::clear(), CLoadInfoMap< Key, Info >::Clear(), CModHandler::Clear(), CWriteObjectList::Clear(), CHistogramBinning::clear(), CNSAffinityRegistry::Clear(), CJobGCRegistry::Clear(), CNSGroupsRegistry::Clear(), CNSScopeRegistry::Clear(), CSimpleMakeFileContents::Clear(), CProjectItemsTree::Clear(), CSymResolver::Clear(), CEutilsClient::ClearAddedParameters(), CHttpHeaders::ClearAll(), CSGDataSourceContext::ClearCache(), CEUtilsUpdaterWithCache::ClearCache(), CRowStyleCatalog::ClearCustomStyles(), CDataLoadingAppJob::ClearItems(), CStatement::ClearParamList(), CTextPanel::ClearState(), CCompoundConstraintPanel::ClearValues(), CSuspectCompoundConstraintPanel::ClearValues(), CQueueDataBase::Close(), CNRCriteria::CNRCriteria(), IAlnMultiDataSource::CollectAlignStats(), CMsvcPrjFilesCollector::CollectExtra(), CFixForTransSplicing::CollectProteinNames(), IProjectViewFactory::CombineObjects(), CTableViewWithTextViewNav::CombineObjects(), CFileDBEngine::CommitTransaction(), CPhyloCSFData::CompactFullScores(), CDBUDRandomMapper::ConfigureFromRegistry(), CDBUDPriorityMapper::ConfigureFromRegistry(), CSeqAnnotFromFasta::CountNonAlphaToPositions(), CPhyTreeLabelTracker::CPhyTreeLabelTracker(), CBamRefSeqInfo::CreateChunks(), CCgiSession_NetCache::CreateNewSession(), CSubtreeBoundary::CreateShapes(), CRemoteAppLauncher::CRemoteAppLauncher(), CTextPanel::DataLoaded(), DeleteElements(), CScriptPanel::DeleteSelected(), CTSE_LockSet::Drop(), CDataSource::DropAllTSEs(), CFileDBEngine::DropDB(), CSplitDataLoader::DropTSE(), CLocksMonitor::DumpLocks(), CTreeQueryExec::EvalStart(), CMacroEngine::Exec(), FilterOutDllHostedProjects(), CSVGRenderer::Finalize(), CPSG_Blob_Task::Finish(), CSeqDBVol::FlushOffsetRangeCache(), SeqTree::forcePrepare(), CTSE_ScopeInfo::ForgetTSE_Lock(), CLoadInfoMap< Key, Info >::Get(), CCountryFixup::GetCommand(), CCountryConflict::GetCommandFromValuesTable(), CLatLonTool::GetCommandFromValuesTable(), CMatchFeatureTableDlg::GetFtableIDToSeqIDMap(), CNCBlobStorage::GetFullBlobsList(), CReadBlastApp::GetLocMap(), CAutoDefSourceGroup::GetModifiersPresentForAny(), CNAUtils::GetNAMetaData(), CDataLoadingAppJob::GetProgress(), GetProteinWeights(), PssmMaker::getPssmColumnResidues(), XSDParser::GetRawAttributeSet(), CVcfSampleSelectionPanel::GetSelectedSamples(), CSeqDBImpl::GetTaxIDs(), CSeqDB::GetTaxIDs(), CHttpRetryContext::GetValues(), CMacroFlowEditor::ImportLibrary(), CCorrectIntervalOrder::Init(), CRemoveDescDlg::Init(), CRemoveFeaturesDlg::Init(), CRemoveGeneXrefs::Init(), CSuppressGenes::Init(), CTaxValidationAndCleanup::Init(), CPhyloTreeCalculator::Init(), CReadBlastApp::Init(), SBDB_CacheUnitStatistics::InitHistorgam(), CNCSyncLog::Initialize(), CBaseClusterer::InitializeClusters(), CTaxNRCriteria::InitializeCriteria(), CMsvcConfigure::InitializeFrom(), CClickableSortUniqueCount::LoadData(), CCgiSession_NetCache::LoadSession(), CUIToolRegistry::LoadSettings(), CHistParamsManager::LoadSettings(), CEditingBtnsPanel::LoadSettings(), CCountries::LoadUSAExceptionMap(), ResidueProfiles::makeConsensus(), CApplyEditconvertPanel::OnApplyToAllButtonClick(), CApplyEditconvertPanel::OnApplyToSelButtonClick(), CMinPanelContainer::OnContextMenu(), CMacroCompoundConstraintPanel::OnRemoveConstraint(), CEditingBtnsPanel::OnResetTabs(), CAlnMultiWidget::OnScoringMethod(), CFeatTree::operator=(), CLocationListCtrl::PopulateIdListFromScope(), CMacroFlowEditor::PopulateRecentMenu(), CUnculTaxTool::PreloadCache(), CAppTaskService::PreShutDownService(), CBamHeader::Read(), CPhyloCSFData::Read(), CRepeatLibrary::Read(), CWig2tableApplication::ReadTrack(), CSGAlignmentDS::ReleaseMemory(), CSeqTextConfig::Reload(), CEventHandler::RemoveAllListeners(), CRemoteAppRequest::Reset(), CGff3LocationMerger::Reset(), SAlignmentData::Reset(), CGtfIdGenerator::Reset(), CConfigRegistry::Reset(), CSNPFeatureParams::Reset(), CNcbiEnvironment::Reset(), CPriorityTaxNodes::Reset(), CRequestContext::Reset(), CBlobSplitterImpl::Reset(), CSplitBlob::Reset(), CFeatIdRemapper::Reset(), XSDParser::Reset(), IEditingAction::ResetChangedDescriptors(), IEditingAction::ResetChangedFeatures(), IEditingAction::ResetChangedInstances(), CScope_Impl::ResetDataAndHistory(), CDataSource_ScopeInfo::ResetDS(), CScope_Impl::ResetScope(), CMacroEngine::ResetTmpRTVarObjects(), CMacroResolver::ResetTmpRTVarObjects(), CObjectManager::RevokeAllDataLoaders(), CFileDBEngine::RollbackTransaction(), CVectorScreen::Run(), s_AnalyzeLibraryOrder(), s_CleanDatabase(), s_ConvertObjectsCat(), NAdapterSearch::CSimpleUngappedAligner::s_CoordSetToMapIndex(), s_GetBlobs(), s_HasPrefixMatch(), s_Test_Interval(), CAlignCompare::SAlignment::SAlignment(), CURLFetchCache::Set(), CIgBlastTabularInfo::SetAirrFormatData(), CFeaturePanel::SetAssembly(), CStringConstraintPanel::SetChoices(), CLengthSubpanel::SetClusters(), CIDSubpanel::SetClusters(), CTextSubpanel::SetClusters(), CFileSubpanel::SetClusters(), CFieldSubpanel::SetClusters(), CFeatureTypeSubpanel::SetClusters(), CDescTypeSubpanel::SetClusters(), CMolInfoSubpanel::SetClusters(), CStructCommentSubpanel::SetClusters(), CAgpConverter::SetComponentsBioseqSet(), CSuspectCompoundConstraintPanel::SetConstraints(), CFastaReader::SetGapLinkageEvidence(), CMultAlign::SetGenomic(), CGnomonAnnotator_Base::SetGenomic(), CTL_BCPInCmd::SetHints(), CDesktopCanvas::SetMainItem(), CGffExporter::SetObjects(), CGtfExporter::SetObjects(), CObjectListWidgetSel::SetObjects(), CTSE_Info::SetSeq_entry(), CMacroBioData_FeatIterBase::SetToDelete(), CHttpHeaders::SetValue(), CAppJobDispatcher::ShutDown(), CViewManagerService::ShutDownService(), CLDS2_Annot_Hook::SkipObject(), CDiscrepancyVisitorImpl< _Name >::Summarize(), CMacroFunction_TrimTerminalNs::TheFunction(), CMacroFunction_ISOJTALookup::TheFunction(), CNonAsciiCharacterReplacement::TransferDataFromWindow(), CMatchFeatureTableDlg::TransferDataToWindow(), NWinHook::CHookedFunctions::UnHookAllFuncs(), CAlignMarkHandler::UnMarkAll(), CScriptPanel::UnselectMacro(), CPhyloTree::UpdateNodesMapping(), CAlnMultiRenderer::UpdateOnDataChanged(), CClickableSortUniqueCount::UpdateTree(), CObjectOStreamXml::WriteFileHeader(), CEpigenomicsTrack::x_AddGraphs(), CNCMessageHandler::x_AssignCmdParams(), CAlignDistGraph::x_CalculateAllDistances(), CFeatureGraph::x_CancelJobs(), CNCActiveSyncControl::x_CleanSyncObjects(), CSampleEditSaver::x_CleanUp(), CHitMatrixDataSource::x_Clear(), CSelectionControl::x_Clear(), CMemoryRegistry::x_Clear(), CQueryImpl::x_ClearAllParams(), CTreeQueryExec::x_ClearBuiltInFunctions(), CDesktopCanvas::x_ClearItems(), CSeqGraphicPane::x_ClearMarkers(), CQueue::x_ClearQueue(), CHitMatrixWidget::x_ClearScoreToParamsMap(), CNCStat::x_ClearStats(), CSrvStat::x_ClearStats(), CMemoryFileMap::x_Close(), CSeqTableGridPanel::x_CollapseTableByColumn(), CNcbiTestApplication::x_CollectAllTests(), CPhrapReader::x_ConvertContig(), CMatchesListCtrl::x_ConvertSelectedToBySeqid(), CObjConvProfile::x_CreateRelatedMap(), CRemoteAppRequest::x_Deserialize(), CTSE_ScopeInfo::x_DetachDS(), CShowBlastDefline::x_DisplayDeflineTable(), CObjectOStreamXml::x_EndNamespace(), CObjectIStreamXml::x_EndTypeNamespace(), CSeqTableGridPanel::x_ExpandTable(), CSDB_ConnectionParam::x_FillParamMap(), CObjectListWidgetSel::x_FillWithObjects(), CColumnarVCFReader::x_GatherSampleColNames(), CGeneFileWriter::x_Gene2PM_ProcessFile(), CGeneFileWriter::x_GeneInfo_ProcessFile(), CCreateGeneModelTask::x_GetCommand(), impl::CDriverContext::x_GetCounts(), CRowReaderStream_Excel_CSV::x_GetFieldTypesToValidate(), CRowReaderStream_IANA_CSV::x_GetFieldTypesToValidate(), CRowReaderStream_IANA_TSV::x_GetFieldTypesToValidate(), CRowReaderStream_NCBI_TSV::x_GetFieldTypesToValidate(), CDiagConsoleCache::x_GetItem(), CSeq_loc_Mapper_Base::x_GetMappedSeq_loc(), CColumnarVCFLoaderManager::x_GetRefSeqs(), CColumnarVCFReader::x_GetSamplesToLoad(), NSnpBins::CGeneMap::x_Init(), CwxAnnotConfigDlg::x_InitAnnotList(), CAlignMarkHandler::x_InitDeltaMap(), CUnicodeToAsciiTranslation::x_Initialize(), CMacroLib::x_InitializeMacrosNameMap(), CAlignedFeatureGraph::x_Layout(), CCompareWithBiosample::x_LoadData(), CSeqGraphicConfig::x_LoadFeatSettings(), CAppHitFilter::x_LoadIDs(), CUpdateMultipleSeq_Input::x_MatchIdsAndAddUpdateToScope(), CFeaturePanel::x_OnAssemblyLoaded(), CAlignMarkHandler::x_OnResetAll(), CPhyloTreeCalculator::x_OnStep(), CCorrectRNAStrandDlg::x_PopulateAccessionList(), CNCActiveSyncControl::x_PrepareSyncByBlobs(), CNCMessageHandler::x_ReadCommand(), CCompartApp::x_ReadSeqLens(), CFastaReader::x_ReadSeqsToAlign(), CUnculturedTool::x_Reset(), CTSE_Info::x_Reset(), CRegexpTemplateTester::x_Reset(), CGFFReader::x_Reset(), CBioseq_ScopeInfo::x_ResetAnnotRef_Info(), SSeq_id_ScopeInfo::x_ResetAnnotRef_Info(), CColumnarVCFReader::x_ResetInfo(), CNetScheduleDApp::x_SaveSection(), CBLASTToolManager::x_SelectCompatibleInputObjects(), CProSplignTool::x_SelectCompatibleInputObjects(), CSplignTool::x_SelectCompatibleInputObjects(), CMergeTool::x_SelectCompatibleInputObjects(), CCleanupHugeAsnReader::x_SetBioseqHooks(), CCleanupHugeAsnReader::x_SetBioseqSetHooks(), CMetaRegistry::x_SetSearchPath(), CWorkbench::x_ShutDownServices(), CWindowManagerService::x_ShutDownToolBars(), CNCMessageHandler::x_SocketOpened(), CAlignTabExportPage2::x_StartAlignNamesJob(), CDataMiningService::x_UnRegisterTools(), CSequenceSearchForm::x_UpdateFileList(), CSelectionControl::x_UpdateItemToIndex(), CAlignMarkHandler::x_UpdateMarks(), CRawSeqToDeltaSeqByLoc::x_UpdateRows(), CFeatTableDS::x_UpdateTypeHash(), CWindowManager::x_UpdateWindowsMenu(), CGff2Record::xAssignAttributesFromGff(), CGffDeconcatApp::xReadFile(), CGff3Reader::xReadInit(), CEventHandler::~CEventHandler(), and CMergeTree::~CMergeTree().
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Definition at line 149 of file map.hpp.
Referenced by CPSGAnnotCache::Add(), CSeq_loc_Conversion_Set::Add(), CAlignCollapser::AddAlignment(), SRemoteNodeData::AddBlacklistedJobs(), CTSE_Split_Info::AddChunk(), CProjectTreeBuilder::AddDatatoolSourcesDepends(), SBDB_CacheUnitStatistics::AddToHistogram(), CTrackContainer::AddTracks(), CSymResolver::Append(), CUpdateMultipleSeq_Input::AppendOld_UpdateSeqPairs(), CReassignFeatureId::apply(), CUniqifyFeatureId::apply(), CLoadSecondaryAccessions::apply(), CEditSelectedGaps::apply_impl(), CAddCitSubForUpdate::ApplyToCSeq_entry(), CCdsMatchInfo::AssignOverlapMatch(), CCdsMatchInfo::AssignXrefMatch(), CBAMDataLoader_Impl::BAMFilesOpened(), BOOST_AUTO_TEST_CASE(), WSDLParser::BuildDataTree(), CAlnMixSequences::BuildRows(), CSGAlignmentDS::CalculateAlignmentScore(), CBLASTParams::CBLASTParams(), CReadDispatcher::CheckReaders(), CChain::ClipToCap(), CChain::ClipToPolyA(), IAlnMultiDataSource::CollectAlignStats(), SCommandLineParserImpl::CommandsAreDefined(), CSGConfigUtils::ComposeProfileString(), CFeaturePanel::ConfigureTracks(), CSeq_loc_Conversion_Set::Convert(), SBDB_CacheUnitStatistics::ConvertToRegistry(), CPhrap_Seq::CopyFrom(), CCommandArgDescriptions::CreateArgs(), CCompareWithBiosample::CreateControls(), SRemoteApp::SRequest::CreateFilesNode(), CGC_Assembly::CreateIndex(), CTrackConfigManager::CreateTrackConfig(), CBinsTrackFactory::CreateTracks(), CHapmapTrackFactory::CreateTracks(), CLDBlockTrackFactory::CreateTracks(), CSnpTrackFactory::CreateTracks(), CVarTrackFactory::CreateTracks(), CEpigenomicsTrackFactory::CreateTracks(), CFeatureTrackFactory::CreateTracks(), CGraphTrackFactory::CreateTracks(), CSequenceTrackFactory::CreateTracks(), CAlignmentTrackFactory::CreateTracks(), CGeneModelFactory::CreateTracks(), CVcfTrackFactory::CreateTracks(), CTraceDataProxy::CTraceDataProxy(), CNcbiEncrypt::Decrypt(), CNcbiEncrypt::DecryptForDomain(), CScriptPanel::DeleteSelected(), CDisambiguator::Disambiguate(), SMakeProjectT::DoResolveDefs(), COpenViewManager::DoTransition(), CColumnarVCFLoaderManager::DoTransition(), CScriptPanel::DragMacro(), CScriptPanel::DropMacro(), CAlignResultsSet::empty(), CObjectIndex::Empty(), CRangeUnion< CBGZFPos >::empty(), CAlignDistGraph::Empty(), CMemorySrcFileMap::Empty(), CReportNode::empty(), CDomainStorage::empty(), CHandleRangeMap::empty(), CTSE_LockSet::empty(), CAnnotPieces::empty(), CSeqsRange::empty(), CSeq_id_int_Tree::Empty(), CSeq_id_Textseq_Tree::Empty(), CSeq_id_Local_Tree::Empty(), CSeq_id_General_Tree::Empty(), CSeq_id_Giim_Tree::Empty(), CSeq_id_Patent_Tree::Empty(), CSeq_id_PDB_Tree::Empty(), CBadResiduesException::empty(), CAppDialogs::ExportDialog(), CTrackUtils::ExtractTrackConfig(), CGC_Assembly::Find(), CSNPDataLoader_Impl::FindFile(), SRemoteNodeData::GCBlacklist(), CFileCode::GenerateHPP(), CProjBulderApp::GenerateUnixProjects(), CLoadInfoMap< Key, Info >::Get(), CNcbiEnvironment::Get(), CPSGAnnotCache::Get(), CAlignDistGraph::GetAndRemoveNearestPair(), CPSGDataLoader_Impl::GetAnnotRecordsNAOnce(), CValidator::CCacheImpl::GetBioseqsOfFeatCache(), SCacheInfo::GetBlob_idsSubkey(), CDataSource::GetBlobs(), CDataSource_ScopeInfo::GetBlobs(), CRemoteBlastDbDataLoader::GetBlobs(), CAlignCollapser::GetCollapsedAlgnments(), CSNPDataLoader_Impl::GetDefaultPriority(), CVDBGraphDataLoader_Impl::GetDefaultPriority(), CValidator::CCacheImpl::GetFeatStrKeyToFeats(), CSNPDataLoader_Impl::GetFileInfo(), CWGSDataLoader_Impl::GetFileInfoByGi(), CWGSDataLoader_Impl::GetFileInfoByProtAcc(), CTaxon1::GetGCName(), CValidator::CCacheImpl::GetIdToBioseq(), CVcfVariant::GetInfoColumnsAsString(), CAlignDistGraph::GetLastAlignEquivs(), CSeqMapSwitchPoint::GetLeftInPlaceInsert(), CQueue::GetLinkedSections(), CGuiObjectInfoComponent::GetLinks(), CGuiObjectInfoSeq_feat::GetLinks(), CNAUtils::GetNATrackInfo(), GetObjects(), CSNPDataLoader_Impl::GetOrphanAnnotRecordsOnce(), CVDBGraphDataLoader_Impl::GetOrphanAnnotRecordsOnce(), GetProdName(), CDataLoadingAppJob::GetProgress(), CCSRADataLoader_Impl::GetRecordsOnce(), CSeqMapSwitchPoint::GetRightInPlaceInsert(), CDBUDPriorityMapper::GetServer(), CNetScheduleServer::GetServiceToQueueSectionConfig(), CCSRADataLoader_Impl::GetSRRFile(), CWGSDataLoader_Impl::GetWGSFile(), CPhyloTreeDataSource::HasClusters(), CNCDistributionConf::HasCommonSlots(), CNCDistributionConf::HasPeers(), CNCBlobStorage::Initialize(), CPSGMessages::IsEmpty(), CHttpFormData::IsEmpty(), CDataSource::IsEmpty(), CSimpleMakeFileContents::IsEmpty(), CSymResolver::IsEmpty(), CBlastMasterNode::IsFull(), CScriptPanel::IsMacroSelected(), CSuspectCompoundConstraintPanel::IsSetConstraints(), CmRNACDSLinker::LinkByProduct(), CCSRARefSeqInfo::LoadAnnotAlignChunk(), CLayoutTrack::LoadProfile(), CWig2tableApplication::MakeAnnot(), CMemorySrcFileMap::MapFile(), CAlignFilter::Match(), CFeatureTableReader::MoveRegionsToProteins(), CAlignCompare::NextGroup(), CFeatureGraph::OnAJNotification(), CApplyEditconvertPanel::OnApplyToAllButtonClick(), CApplyEditconvertPanel::OnApplyToSelButtonClick(), CIndexerAppModeExtension::OnCloseWorkspace(), CMacroFlowEditor::OnDeleteFromLibraryUpdate(), CMacroFlowEditor::OnEditLibraryUpdate(), CMacroFlowEditor::OnExportUpdate(), CMacroFlowEditor::OnFindUpdate(), CMacroFlowEditor::OnLibraryExpandUpdate(), CScriptPanel::OnMouseDown(), CScriptPanel::OnMouseUp(), CMacroFlowEditor::OnPasteClick(), CBAMDataLoader_Impl::OpenBAMFilesOnce(), SAlignmentData::operator bool(), CSeq_annot_SNP_Info_Reader::ParseAnnot(), CFastaReader::ParseGapLine(), CVcfVariant::ParseInfoColumns(), CMakefilePatch::PatchTreeMakefiles(), CChain::PeaksAndLimits(), CHTMLPageStat::PrintBegin(), SBDB_CacheUnitStatistics::PrintStatistics(), CNCStat::PrintToSocket(), CCommandArgDescriptions::PrintUsage(), CProjectTreeBuilder::ProcessDir(), CProcessor_ID1_SNP::ProcessObjStream(), CProcessor_SE_SNP::ProcessObjStream(), CFeaturePropagator::PropagateFeatureList(), CKalignTool::QuickLaunch(), CMafftTool::QuickLaunch(), CMuscleTool::QuickLaunch(), CSplignTool::QuickLaunch(), ReadEnvironment(), CFastaReader::ReadOneSeq(), CScope_Impl::ResetScope(), CAnnotMetaDataJob::Run(), CDemoApp::Run(), s_AddProjItemToDll(), s_AlleleStateMap(), s_BuiltInSM(), s_GetBlobs(), CMiscSeqTable::s_GetValueToSehMap(), s_HasPrefixMatch(), s_InitTrackFromSettings(), CLayoutTrack::SaveProfile(), CBLASTToolManager::SaveSettings(), CSeq_align::ScoreNameMap(), CScriptPanel::SelectMacros(), CCachedTaxon3_impl::SendOrgRefList(), SerializePauseState(), CHttpFormData::SetContentType(), CTaxIdSet::SetMappingFromFile(), CAlignTabExporter::SetObjects(), C5ColExporter::SetObjects(), CAgpExporter::SetObjects(), CFastaExporter::SetObjects(), CFlatFileExporter::SetObjects(), CGtfExporter::SetObjects(), CStatement::SetParam(), CTSE_Info::SetSeq_entry(), CViewManagerService::ShutDownService(), SpecType(), SRemoteNodeData::SubtractBlacklistedJobs(), TestForNonAsciiText(), CMatchFeatureTableDlg::TransferDataToWindow(), CObjectListWidgetSel::TransferDataToWindow(), CTSEAnnotObjectMapper::Unmap(), SRemoteNodeData::UpdateBlacklist(), CDiscrepancyConf::UpdateList(), CRowReaderStream_Excel_CSV::Validate(), CRowReaderStream_IANA_CSV::Validate(), CRowReaderStream_IANA_TSV::Validate(), CRowReaderStream_NCBI_TSV::Validate(), CMultAlign::Variations(), SMakeProjectT::VerifyLibDepends(), CMsvcConfigure::WriteBuildVer(), CHttpFormData::WriteFormData(), CCgiResponse::WriteHeader(), CEutilsClient::x_AddAdditionalParameters(), CPhrap_Contig::x_AddBaseSegFeats(), CPhyTreeFormatter::x_AddFeaturesForInnerNodes(), CGeneModelTrack::x_AddMainFeaturesLayout(), CPhrap_Contig::x_AddReadLocFeats(), CObjectOStreamXml::x_BeginNamespace(), CScope_Impl::x_ClearCacheOnNewData(), CScope_Impl::x_ClearCacheOnNewDS(), CGBDocument::x_CloseProjectItemViews(), CSGAlignStatJob::x_CollectAlignStats(), CFeaturePanel::x_ConfigureSubtracks(), CFeaturePanel::x_ConfigureTracks(), CAlgoToolManagerBase::x_ConvertInputObjects(), CPhrap_Contig::x_CreateAlign(), CSGFeatureJob::x_CreateFeatSmear(), CSplignTool::x_CreateParamsPanelIfNeeded(), CUpdateMultipleSeq_Input::x_CreateUpdateSeqInput(), CUpdateMultipleSeq_Input::x_CreateUpdateSeqInputForUnitTest(), CBlobCacher::x_DelFileAndRetryCreate(), CHistogramGlyph::x_Draw(), CMemoryRegistry::x_Empty(), CWigGraph::x_FetchData(), CSeqDBAliasSets::x_FindBlastDBPath(), CSeq_id_Textseq_Tree::x_FindMatchByAcc(), CSeq_id_Textseq_Tree::x_FindRevMatchByAccPacked(), CBulkCleaner::x_FinishSession(), CQueryImpl::x_GetContext(), CQueueDataBase::x_GetFirst(), CQueueDataBase::x_GetLastPurged(), CVDBGraphDataLoader_Impl::x_GetNAFileInfo(), CQueueDataBase::x_GetNext(), CGridWidget::x_GetRectSelection(), CAlignFilter::x_GetRegionMap(), CColumnarVCFReader::x_GetSamplesToLoad(), CNetScheduleHandler::x_GetStoredSectionValues(), CAnnot_Collector::x_GetTSE_Info(), CAlnStats< _TAlnIdVec >::x_IdentifyPotentialAnchors(), SAccGuide::x_InitGeneral(), CAgpConverter::x_InitializeAndCheckCopyOfTemplate(), CHistogramBinning::x_InitializeHistogramAlgo(), CPhyTreeFormatter::x_InitTreeFeatures(), CBLASTToolManager::x_IsNucInput(), CGff2Reader::x_MergeAlignments(), CTrackContainer::x_OnJobCompleted(), CObjectListWidgetSel::x_PopulateGroups(), CGeneModelFeatJob::x_ProcessLandMarkFeatures(), CXcompareAnnotsApplication::x_ProcessSeqAlignSetFromFile(), CTrackContainer::x_ReinitNATrack(), CCompareWithBiosample::x_ReloadTable(), CGFFReader::x_RemapGeneRefs(), CAlnMultiRenderer::x_RenderAlignAreaTopLine(), CDataLoadingAppJob::x_Run(), CAnnot_Collector::x_SearchAll(), CAlnMixMerger::x_SecondRowFits(), CTaxIdSet::x_SelectBestTaxid(), CSplignTool::x_SelectCompatibleInputObjects(), CCleanupHugeAsnReader::x_SetBioseqHooks(), CCleanupHugeAsnReader::x_SetBioseqSetHooks(), CGapsEditor::x_SetGapParameters(), CAlnMixMerger::x_SetSeqFrame(), CBulkCleaner::x_StartSession(), CVectorTrimPanel::x_TrimSelected(), CSeq_id_Textseq_Tree::x_Unindex(), CSeq_id_General_Tree::x_Unindex(), CTSE_Info::x_UnmapAnnotObject(), CTSE_Info::x_UnmapAnnotObjects(), SRemoteNodeData::x_UpdateBlacklist(), CValidError_bioseq::x_ValidateCDSmRNAmatch(), CQueue::x_ValidateMaxJobsPerClientIP(), CEditObjectFeaturePropagate::xInit(), CSrcWriter::xInit(), CGff2Record::xMigrateAttributes(), CTbl2AsnApp::xProcessOneFile(), CObjectManager::~CObjectManager(), and CTSE_ScopeInfo::~CTSE_ScopeInfo().
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Definition at line 152 of file map.hpp.
Referenced by CDisambiguator::Add(), CAlnMixSequences::Add(), CPSGBioseqCache::Add(), CAlnMix::Add(), CPSGAnnotCache::Add(), CPSGCache_Base< string, shared_ptr< SPsgBlobInfo > >::Add(), CCDDBlobCache::Add(), CRangeUnion< CBGZFPos >::add_range(), CLDS2_ObjectParser::AddAnnot(), CMultiReader::AddAnnotToMap(), CGffBaseRecord::AddAttribute(), CGffBaseRecord::AddAttributes(), CNSClientsRegistry::AddBlacklistedJobs(), SequenceDisplay::AddBlockBoundaryRows(), CNSTClientRegistry::AddBytesRead(), CNSTClientRegistry::AddBytesRelocated(), CNSTClientRegistry::AddBytesWritten(), CLabelDescriptionCacheImpl::AddCaches(), CBLAST_Dlg_Item::AddChild(), CTSE_Split_Info::AddChunk(), CNSAffinityRegistry::AddClientToAffinities(), CNSAffinityRegistry::AddClientToAffinity(), CArgDescriptions::CPrintUsage::AddCommandDescription(), CCriteriaSet::AddCriteria(), CProjectTreeBuilder::AddDatatoolSourcesDepends(), CQualLookupMap::AddDesc(), CExtensionPoint::AddExtension(), CQualLookupMap::AddFeat(), CFeatureMap::AddFeature(), CBuildDatabase::AddIds(), CMsvcPrjProjectContext::AdditionalLinkerOptions(), CNSGroupsRegistry::AddJob(), CNSScopeRegistry::AddJob(), CNSScopeRegistry::AddJobs(), CNSGroupsRegistry::AddJobs(), CNSAffinityRegistry::AddJobToAffinity(), CNSGroupsRegistry::AddJobToGroup(), SGridWorkerNodeImpl::AddJobWatcher(), CSUCBlock::AddLine(), CModHandler::AddMods(), CNSTClientRegistry::AddObjectsDeleted(), CNSTClientRegistry::AddObjectsRead(), CNSTClientRegistry::AddObjectsRelocated(), CNSTClientRegistry::AddObjectsWritten(), CQualLookupMap::AddOrg(), CGff3LocationMerger::AddRecordForId(), CGtfLocationMerger::AddRecordForId(), SAccGuide::AddRule(), CImportFeatTable::AddSeqAnnotToSeqEntry(), CBuildDatabase::AddSequences(), CQualLookupMap::AddString(), CGtfLocationMerger::AddStubForId(), CExplicit_Mapper_Sequence_Info::AddSynonym(), CClickableSortUniqueCount::AddToBulkEditList(), SBDB_CacheUnitStatistics::AddToHistogram(), CClickableSortUniqueCount::AddToListCtrl(), CWindowManagerService::AddToolBarContext(), CUIToolRegistry::AddToolToMRU(), CNSClientsRegistry::AddToSubmitted(), CViewManagerService::AddToWorkbench(), CTrackContainer::AddTracks(), CRootTextItem::AddUserObject(), CGtfAttributes::AddValue(), ResidueProfiles::adjustConsensusAndGuide(), SMakeProjectT::AnalyzeMakeIn(), CForeignContaminationScreenReportReader::AnnotateOrRemove(), CQueueDataBase::AnyJobs(), CSymResolver::Append(), CReadBlastApp::append_misc_feature(), AppendChildrenToTree(), CUpdateMultipleSeq_Input::AppendOld_UpdateSeqPairs(), CNSClientsRegistry::AppendType(), CNSTClientRegistry::AppendType(), CAddFluComments::Apply(), CConvertSelectedGaps::apply_impl(), CEditSelectedGaps::apply_impl(), CAddCitSubForUpdate::ApplyToCSeq_entry(), CSpecificHostMapForFix::ApplyToOrg(), CRemoveDuplicateStructuredComment::ApplyToUserObject(), CGvfReadRecord::AssignFromGff(), CCdsMatchInfo::AssignOverlapMatch(), CCdsMatchInfo::AssignXrefMatch(), CBlobSplitterImpl::AttachToSkeleton(), CObjectOStreamXml::BeginChoiceVariant(), CObjectOStreamXml::BeginClassMember(), ASNParser::BeginComponentsDefinition(), CMappingRanges::BeginMappingRanges(), CSeq_loc_Conversion_Set::BeginRanges(), BlastKmerGetKmerSetStats(), BOOST_AUTO_TEST_CASE(), CAlnMixSegments::Build(), WSDLParser::BuildDataTree(), CCompactLayout::BuildLayout(), ResidueProfiles::calcInformationContent(), CSGAlignmentDS::CalculateAlignmentScore(), ResidueProfiles::calculateRowWeights(), CQueueDataBase::CalculateRuntimePrecision(), CAlignDistGraph::CAlignDistGraph(), CAlnStats< _TAlnIdVec >::CAlnStats(), CNSAffinityRegistry::CanAccept(), CNSGroupsRegistry::CanAccept(), CNSScopeRegistry::CanAccept(), CQueue::Cancel(), CObjectManagerEngine::CancelJob(), CThreadPoolEngine::CancelJob(), CAppTaskService::CancelTask(), CNSClientsRegistry::CancelWaiting(), CViewManagerService::CanCreateView(), CGencollIdMapper::CanMeetSpec(), CAutoSqlCustomField::CAutoSqlCustomField(), CCgiEnvHolder::CCgiEnvHolder(), CChangeStructuredCommentKeyword::CChangeStructuredCommentKeyword(), CDDSplashDialog::CDDSplashDialog(), CGff2Record::CGff2Record(), CGffBaseRecord::CGffBaseRecord(), CJobGCRegistry::ChangeAffinityAndGroup(), CGffIdTracker::CheckAndIndexRecord(), CAgpValidateReader::CIdsNotInAgp::CheckIds(), CGffIdTracker::CheckIntegrity(), CQueue::CheckJobsExpiry(), CDataTypeModule::CheckNames(), CNSAffinityRegistry::CheckRemoveCandidates(), CNSGroupsRegistry::CheckRemoveCandidates(), CNSScopeRegistry::CheckRemoveCandidates(), CHttpCookie_CI::CHttpCookie_CI(), CDataType::ClassName(), CQualCleanup::CleanAndValidate(), CDBUDRandomMapper::CleanExcluded(), CAlignCollapser::CleanSelfTranscript(), CHttpCookies::Cleanup(), CHttpHeaders::Clear(), CNSAffinityRegistry::Clear(), CNSGroupsRegistry::Clear(), CNSClientsRegistry::ClearClient(), CQueryImpl::ClearParameter(), CStatement::ClearParamList(), SeqTree::clearTaxSelection(), NSnpGui::ClinSigFromString(), CChain::ClipLowCoverageUTR(), CChain::ClipToPolyA(), CPhyloTreeDataSource::Clusterize(), CMsvcPrjProjectContext::CMsvcPrjProjectContext(), CRegExFSA::Collect(), WSDLParser::CollectDataObjects(), CProjBulderApp::CollectDep(), CollectDllsDepends(), CMsvcPrjFilesCollector::CollectExtra(), CNSAffinityRegistry::CollectGarbage(), CNSGroupsRegistry::CollectGarbage(), CNSScopeRegistry::CollectGarbage(), CProjBulderApp::CollectLibToLibDependencies(), CFixForTransSplicing::CollectProteinNames(), CSeq_loc_Mapper_Base::CollectSynonyms(), CSimpleMakeFileContents::CollectValues(), CSampleEditSaver::CommitTransaction(), CSeqsRange::Compare(), CTaxNRCriteria::CompareItems(), CSeqDBAliasNode::CompleteAliasFileValues(), CScoreLookup::Complexity(), CSGConfigUtils::ComposeProfileString(), CSeqDBAliasNode::ComputeMasks(), CSubtreeBoundary::ComputeShapes(), SQueueParameters::ConfigSection(), CDeleteQueue< const CTSE_ScopeInfo *, CTSE_ScopeInternalLock >::Contains(), CTSE_Info::ContainsBioseq(), RowSourceTable::convertFromCDRow(), RowSourceTable::convertFromCDRows(), CFeatureGenerator::SImplementation::ConvertMixedAlignToAnnot(), CPepXML::ConvertModifications(), SBDB_CacheUnitStatistics::ConvertToRegistry(), CTableImportDataSource::ConvertToSeqAnnot(), CReadBlastApp::CopyInfoFromGenesToProteins(), CQueueDataBase::CountActiveJobs(), CQueueDataBase::CountAllJobs(), CHttpHeaders::CountValues(), SMakeProjectT::Create3PartyLibs(), CCommandArgDescriptions::CreateArgs(), CCompareWithBiosample::CreateBiosampleUpdateWebService(), CMolInfoEditDlg::CreateControls(), CRemoveDescDlg::CreateControls(), CUpdateMultiSeq_Dlg::CreateControls(), CNonAsciiCharacterReplacement::CreateControls(), CTrackConfigManager::CreateDisplayName(), CreateDllBuildTree(), CQueueDataBase::CreateDynamicQueue(), DTDParser::CreateEmbeddedName(), XSDParser::CreateEntityId(), SRemoteApp::SRequest::CreateFilesNode(), CPluginManager< SNetScheduleAPIImpl >::CreateInstance(), CInterfaceRegistry::CreateInterface(), CFeatureGenerator::CreateMicroIntrons(), SAppProjectT::CreateNcbiCToolkitLibs(), CPhyloCSFData::CreateSliceForContig(), CPageList::CreateSubNodes(), CHTMLPage::CreateTemplate(), CTrackConfigManager::CreateTrackConfig(), CGeneModelFactory::CreateTracks(), CViewManagerService::CreateViewInstance(), CTraversalCodeGenerator::CTraversalCodeGenerator(), CTextPanel::DataLoaded(), CGridCgiContext::DefinePersistentEntry(), CQueueDataBase::DeleteDynamicQueue(), DeleteElements(), CJobGCRegistry::DeleteIfTimedOut(), CDiagContext::DeleteProperty(), CNcbiResourceInfoFile::DeleteResourceInfo(), TaxTreeData::deselectAllTaxNodes(), SQueueParameters::Diff(), CDisambiguator::Disambiguate(), CEventHandler::Dispatch(), HitDistributor::distribute(), SAsnProjectMultipleT::DoCreate(), SAppProjectT::DoCreate(), SLibProjectT::DoCreate(), SDllProjectT::DoCreate(), SMsvcProjectT::DoCreate(), CSimpleMakeFileContents::DoesValueContain(), DoHighlightMotif(), SMakeProjectT::DoResolveDefs(), COpenViewManager::DoTransition(), CColumnValidatorRegistry::DoValidate(), CGffBaseRecord::DropAttributes(), CPSGBlobMap::DropBlob(), CAlignResultsSet::DropQuery(), CQueue::Dump(), CNSAffinityRegistry::Dump(), CNSGroupsRegistry::Dump(), HitDistributor::dump(), CEditingBtnsPanel::EditButton(), WSDLParser::EmbeddedElement(), CWriteDB_PackedSemiTree::End(), CRangeUnion< CBGZFPos >::end(), CPhyTreeLabelTracker::End(), CHandleRangeMap::end(), CTSE_LockSet::end(), CAnnotPieces::end(), CSeqsRange::end(), CNcbiEnvironment::Enumerate(), CDeleteQueue< const CTSE_ScopeInfo *, CTSE_ScopeInternalLock >::Erase(), CReadBlastApp::erase_problems(), CVcfHistogram::EraseCachePerAnnotation(), CDBUDRandomMapper::Exclude(), CTreeFiller::Execute(), CStatement::ExecuteLast(), CReportNode::Exist(), CMacroEngine::ExistRTVar(), CMacroResolver::ExistRTVar(), CSeqDB_IdListValuesTest::Explore(), CFileModules::ExternalResolve(), CDataTypeModule::ExternalResolve(), CAlignFormatUtil::ExtractSeqAlignForSeqList(), ExtractSupportModels(), CQueue::FailJob(), TAsyncToken::FeatFromMap(), CSoMap::FeatureToSoType(), CAlignCollapser::FillGapsInAlignmentAndAddToGenomicGaps(), CAlignCollapser::FilterAlignments(), CNSAffinityRegistry::FinalizeAffinityDictionaryLoading(), CGff3AnnotAssembler::FinalizeAnnot(), CNSGroupsRegistry::FinalizeGroupDictionaryLoading(), CGC_Assembly::Find(), CItemsInfo::Find(), CPSGCache_Base< string, shared_ptr< SPsgBlobInfo > >::Find(), IEditingActionBiosource::Find(), IEditingActionDesc::Find(), CEditingActionDescUserObject::Find(), IEditingActionInst::Find(), CEditingActionDescLocalId::Find(), CEditingActionDescComment::Find(), IEditingActionFeat::Find(), CEditingActionFeatGeneLocusPlain::Find(), CEditingActionFeatGeneLocusRna::Find(), CEditingActionFeatGeneLocusCdsGeneProt::Find(), CAppRegistry::Find(), SAccGuide::Find(), CPriorityTaxNodes::findAncestor(), CSeqTranslator::FindBestFrame(), CTSE_Info::FindBioseq(), CNCBlobStorage::FindBlob(), CCompoundRegistry::FindByName(), CSeqTableInfo::FindColumn(), CMacroPanelLoader::FindControl(), CCriteriaSet::FindCriteria(), CCgiApplication::FindDiagFactory(), IEditingActionFeat::FindFeatForAnotherFeat(), CFeatureMap::FindFeature(), CDomainStorage::FindFieldStringById(), CDomainStorage::FindFieldValueById(), CProjectTreeFolders::FindFolder(), CFeatureMap::FindGeneParent(), CSeq_id_int_Tree::FindInfo(), CSeq_id_Textseq_Tree::FindInfo(), CSeq_id_General_Tree::FindInfo(), CSeq_id_PDB_Tree::FindInfo(), FindInstCodeAndSpecID(), COrgMod::FindInstitutionCode(), CTSE_LockSet::FindLock(), CSeq_id_Textseq_Tree::FindMatch(), CSeq_id_PDB_Tree::FindMatch(), sequpd::FindMatches(), CSeq_id_int_Tree::FindMatchStr(), CSeq_id_Giim_Tree::FindMatchStr(), CSeq_id_PDB_Tree::FindMatchStr(), CFeatureMap::FindMrnaParent(), CEnumeratedTypeValues::FindName(), COrgRefCache::FindNameClassByName(), CPhyloTree::FindNodeById(), CSeq_id_Textseq_Tree::FindOrCreate(), CSeq_id_General_Tree::FindOrCreate(), CSeq_id_Patent_Tree::FindOrCreate(), CProjectTreeFolders::FindOrCreateFolder(), IEditingActionFeat::FindOrCreateProtFeat(), IEditingActionDesc::FindRelated(), CEditingActionDescUserObject::FindRelated(), IEditingActionFeat::FindRelated(), CEditingActionFeatGeneLocus::FindRelated(), IEditingActionFeat::FindRelatedFeatForAnotherFeat(), IEditingActionFeat::FindRelatedOrCreateProtFeat(), CObjectConverter::FindRelations(), CSeq_id_Textseq_Tree::FindReverseMatch(), CSeq_id_PDB_Tree::FindReverseMatch(), CTableDataBioTreeContainer::FindRow(), CMasterSeqSegments::FindSeg(), CSNPDb_Impl::FindSeq(), CDataSource::FindSeq_feat_Lock(), CFileDBEngine::FindSeqId(), SAccGuide::SHints::FindSubMap(), CSNPDb_Impl::FindTrack(), CEnumeratedTypeValues::FindValue(), CDomainStorage::FindValueIdByField(), CObjFingerprint::Fingerprint(), CSubSource::FixIsolationSourceCapitalization(), CGb_qual::FixRecombinationClassValue(), CReadBlastApp::FixStrands(), COrgMod::FixStructuredVoucher(), CSubSource::FixTissueTypeCapitalization(), CBlastMasterNode::FormatResults(), FtaStrSevToIntSev(), g_GetClientIP(), g_SrvTimeTerm(), SRemoteNodeData::GCBlacklist(), CNSClientsRegistry::GCBlacklistedJobs(), DTDParser::GenerateDataTree(), CProjBulderApp::GenerateMsvcProjects(), CRegExFSA::GenerateSourceCode(), CProjBulderApp::GenerateUnixProjects(), CScore_OverlapBoth::Get(), CScore_OrdinalPos::Get(), CPSGBioseqCache::Get(), CCDDBlobCache::Get(), CDeleteQueue< const CTSE_ScopeInfo *, CTSE_ScopeInternalLock >::Get(), CURLFetchCache::Get(), CNcbiEnvironment::Get(), CPSGAnnotCache::Get(), CRepeatLibrary::Get(), CRfamModel::Get(), CSeq_id_Resolver::Get(), CSDB_ConnectionParam::Get(), CWriteDB_PackedSemiTree::Iterator::Get(), CAlignmentCollectionScore::Get(), CCacheWithLock< Key, Value, Less >::get_lock(), CBinaryRangeCacheWithLock< Position, Value >::get_lock(), IEditingAction::GetActionCommand(), CJobGCRegistry::GetAffinityID(), CNSClientsRegistry::GetAffinityReset(), CSeqDBAliasFile::GetAliasFileValues(), CAlnStats< _TAlnIdVec >::GetAlignedIds(), CCommandArgDescriptions::GetAllDescriptions(), CBlastTabularInfo::GetAllFieldNames(), SeqItem::getAllSelectedInstances(), CHttpHeaders::GetAllValues(), SBamIndexRefIndex::GetAlnOverStarts(), CSGSegmentSmearJob::GetAnnotNames(), CLDS2_Database::GetAnnots(), CNCServer::GetAppSetup(), CEUtils_Request::GetArgument(), SAsnProjectT::GetAsnProjectType(), CAssemblyCache::GetAssemblies(), CTSE_Split_Info::GetAssigner(), CGencollSvc::GetAssmAccs(), XSDParser::GetAttribute(), CCgiSession_NetCache::GetAttribute(), pythonpp::CExtObject< CCursor >::GetAttrImpl(), CCgiSession_NetCache::GetAttrIStream(), CAssemblyCache::GetBestAssemblyAcc(), CTotalRangeSynonymMapper::GetBestSynonym(), GetBiosampleData(), GetBiosampleStatus(), CAlnVec::GetBioseqHandle(), CSeqMasterIndex::GetBioseqIndex(), CTSE_ScopeInfo::GetBioseqLock(), CValidator::CCacheImpl::GetBioseqsOfFeatCache(), SRemoteNodeData::GetBlacklistLimit(), CTaxonCache::GetBlastName(), CDataSource::GetBlobs(), CCategoryConfig::GetCategory(), CSplign::GetCds(), CBLAST_Dlg_Item::GetChildByLabel(), CSplitDataLoader::GetChunk(), CTSE_Split_Info::GetChunk(), CGBDataLoader_Native::GetChunks(), CPSG_Blob_Task::GetChunkSlot(), CBaseClusterer::GetClusterForId(), CWidgetDisplayStyle::GetColor(), CSeqTextConfig::GetColor(), CPhyloTreeDataSource::GetColumnLabel(), CAlnTableDS::GetColumnName(), CConvertFeatDlg::GetCommand(), CUnculTaxTool::GetCommandFromValuesTable(), CTaxonCache::GetCommon(), CCriteriaSet::GetCriteriaInstance(), CBLASTParams::GetCurrParams(), CNSTClientRegistry::GetDBClientID(), CNSTUserCache::GetDBUserID(), CDiagErrCodeInfo::GetDescription(), CIgAnnotationInfo::GetDJChainType(), CIgAnnotationInfo::GetDomainChainType(), CIgAnnotationInfo::GetDomainInfo(), CSGDataSourceContext::GetDS(), CProt_ref::GetECNumberReplacement(), CProt_ref::GetECNumberStatus(), XSDParser::GetElementNamespace(), CGridCgiContext::GetEntryValue(), DTDAttribute::GetEnumValueId(), DTDAttribute::GetEnumValueSourceLine(), CAppEnvHolder::GetEnv(), CExtensionPoint::GetExtension(), CExtensionRegistry::GetExtensionPoint(), CExtensionRegistry::GetExtensions(), CProjectItemsTree::GetExternalDepends(), CDllSrcFilesDistr::GetExtraFileLib(), CValidator::CCacheImpl::GetFeatFromCache(), CBioseqIndex::GetFeatIndex(), CGetFeature::GetFeatInfo(), CSeqGraphicConfig::GetFeatParams(), CValidator::CCacheImpl::GetFeatStrKeyToFeats(), CTreeQueryExec::GetFeatureIdNoCase(), CSNPFeatureParams::GetFeatureParams(), CMacroEditorContext::GetFeatureType(), CRR_MetaInfo< TTraits >::GetFieldIndexByName(), CCSRADataLoader_Impl::GetFileInfo(), CSeqDBAtlas::GetFileSizeL(), CSNPDataLoader_Impl::GetFixedFile(), CPdfFontHandler::GetFontName(), CIgAnnotationInfo::GetFrameOffset(), CMatchFeatureTableDlg::GetFtableIDToSeqIDMap(), CSet5PartialTreeItemData::GetFunction(), CSet3PartialTreeItemData::GetFunction(), CSetBothPartialTreeItemData::GetFunction(), CClear5PartialTreeItemData::GetFunction(), CClear3PartialTreeItemData::GetFunction(), CClearBothPartialTreeItemData::GetFunction(), CTreeQueryExec::GetFunctionNames(), CIgAnnotationInfo::GetFwr4EndOffset(), CGapAnalysis::GetGapLengthSeqIds(), CGapAnalysis::GetGapLengthSummary(), CGapAnalysis::GetGapLengthToNumAppearances(), CGencollSvc::GetGCAssembly(), CTaxon1::GetGCName(), CGeneInfoFileReader::GetGeneInfoForId(), GetGoTermErrors(), CJobGCRegistry::GetGroupID(), CGuidGenerator::GetGuidUser(), CMacroEditorContext::GetGUIMolinfoValue(), CDllSrcFilesDistr::GetHeaderLib(), CCgiResponse::GetHeaderValue(), CGridCgiContext::GetHiddenFields(), CHistParamsManager::GetHistParams(), NWinHook::CHookedFunctions::GetHookedFunction(), CDBInterfacesFileConnParams::GetHost(), CBioTreeFeatureDictionary::GetId(), CNSAffinityRegistry::GetIDByToken(), CFeatureIdGenerator::GetIdFor(), CLocationListCtrl::GetIdFromForm(), CValidator::CCacheImpl::GetIdToBioseq(), PT::CPTIcons::GetImageIndex(), CSelectionEvent::GetIndexed(), CDllSrcFilesDistr::GetInlineLib(), CSeqMapSwitchPoint::GetInsert(), COrgMod::GetInstitutionFullName(), COrgMod::GetInstitutionShortName(), CFeatList::GetItemBySubtype(), CNRCriteria::GetItemForId(), CIgAnnotationInfo::GetJDomain(), CNSGroupsRegistry::GetJobs(), CNSScopeRegistry::GetJobs(), CNSScopeRegistry::GetJobScope(), CObjectManagerEngine::GetJobState(), CThreadPoolEngine::GetJobState(), CNSAffinityRegistry::GetJobsWithAffinities(), CNSAffinityRegistry::GetJobsWithAffinity(), CISOJTALookupWithCache::GetJournalAbbr(), CTrackUtils::GetKey(), CTrackConfigManager::GetKnownAnnots(), CTaxonCache::GetLabel(), CFeatGlyph::GetLabel(), CLabelDescriptionCacheImpl::GetLabel(), SeqTree::getLeafById(), CMsvcSite::GetLibInfo(), CJobGCRegistry::GetLifetime(), CQueueDataBase::GetLinkedSection(), CQueueDataBase::GetLinkedSectionConfig(), CQueue::GetLinkedSections(), CGuiObjectInfoComponent::GetLinks(), CGuiObjectInfoSeq_feat::GetLinks(), CGuiObjectInfoVariant::GetLinks(), CEventHandler::GetListeners(), CInfoCache< KeyType, DataType >::GetLoaded(), CGff3LocationMerger::GetLocation(), variation::CVariationUtil::CVariantPropertiesIndex::GetLocationProperties(), GetLocusTag(), CSet5PartialTreeItemData::GetMacroDescription(), CSet3PartialTreeItemData::GetMacroDescription(), CSetBothPartialTreeItemData::GetMacroDescription(), CClear5PartialTreeItemData::GetMacroDescription(), CClear3PartialTreeItemData::GetMacroDescription(), CClearBothPartialTreeItemData::GetMacroDescription(), CMacroLib::GetMacroRep(), GetMapElement(), CFeatTree::GetMappedFeat(), GetMapString(), CAlignMarkHandler::GetMark(), CSeqGraphicPane::GetMarker(), ILayoutTrackFactory::GetMatchedAnnots(), CDataSource::GetMatches(), CClassTypeInfoBase::GetMayContainType(), CAutoDefSourceGroup::GetModifiersPresentForAny(), CMemorySrcFileMap::GetMods(), CUIToolRegistry::GetMRUToolNames(), CAgpErr::GetMsg(), CBioTreeFeatureDictionary::GetName(), COrgRefCache::GetNameClassName(), CNAUtils::GetNATrackInfo(), CTextFsm< CSeqSearch::CPatternInfo >::CState::GetNextState(), XSDParser::GetNextToken(), CNSClientsRegistry::GetNodeName(), ResidueProfiles::GetNumUnqualAfterIndex(), CReverseObjectStore< TKey, TObject >::GetObject(), DTDElement::GetOccurrence(), CPhrap_Seq::GetPaddedPos(), impl::CDBConnParamsBase::GetParam(), CQueryImpl::GetParameter(), CQueueDataBase::GetPauseQueues(), CNCDistributionConf::GetPeerNameOrEmpty(), CNCPeerControl::GetPeerNameOrEmpty(), CGridCgiContext::GetPersistentEntryValue(), CTaxon1::GetPopsetJoin(), CDBInterfacesFileConnParams::GetPort(), CJobGCRegistry::GetPreciseReadVacantTime(), CJobGCRegistry::GetPreciseSubmitTime(), CNSClientsRegistry::GetPreferredAffinities(), CCdDbPriority::GetPriority(), CPriorityTaxNodes::GetPriorityTaxidAndName(), CPriorityTaxNodes::GetPriorityTaxnode(), CReadDispatcher::GetProcessor(), GetProdName(), CCDSTranslationPanel::GetProductId(), CBLASTParams::GetProgramLabel(), CNSTServiceRegistry::GetProlongOnRead(), CNSTServiceRegistry::GetProlongOnRelocate(), CNSTServiceRegistry::GetProlongOnWrite(), CRequestContext::GetProperty(), CDiagContext::GetProperty(), CWGSDb_Impl::GetProtAccRanges(), CChoicePointerTypeInfo::GetPtrIndex(), CDoiLookupWithCache::GetPub(), CValidator::CCacheImpl::GetPubdescToInfo(), CEUtilsUpdaterWithCache::GetPubmedEntry(), GetQualifierClass(), CQueueDataBase::GetQueueClassesConfig(), CQueueDataBase::GetQueueClassesInfo(), CQueueDataBase::GetQueueConfig(), CQueueDataBase::GetQueueInfo(), CQueueDataBase::GetQueueNames(), CSeqUtils::GetRangeCollection(), TaxTreeData::getRankId(), CGtfLocationRecord::GetRecordType(), CBamHeader::GetRefIndex(), CBAMDataLoader_Impl::GetRefSeqInfo(), CCSRAFileInfo::GetRefSeqInfo(), CBamFileInfo::GetRefSeqInfo(), CQueueDataBase::GetRefuseSubmitQueues(), CUnculTaxTool::GetReply(), CNcbiResourceInfoFile::GetResourceInfo(), CReadBlastApp::GetRNAfeats(), CDBConnectionFactory::GetRuntimeData(), CNSScopeRegistry::GetScopeNames(), CNSClientsRegistry::GetScopes(), CScoreLookup::GetScore(), CHitMatrixDataSource::GetScoreRange(), TaxTreeData::getSelections(), CGridCgiContext::GetSelfURL(), CVDBGraphDb_Impl::GetSeqInfo(), CVDBGraphDb_Impl::GetSeqInfoAtRow(), CSeq_loc_Mapper_Base::GetSeqType(), CSeq_loc_Mapper_Base::GetSeqTypeById(), CSeq_loc_Mapper_Base::GetSequenceLength(), CTestMapperSeqInfo::GetSequenceLength(), CTestMapperSeqInfo::GetSequenceType(), CDBDefaultServiceMapper::GetServer(), CDBUDRandomMapper::GetServer(), CDBUDPriorityMapper::GetServer(), SNetScheduleAPIImpl::GetServerByNode(), CDBLB_ServiceMapper::GetServerOptions(), CDBUDRandomMapper::GetServerOptions(), CDBUDPriorityMapper::GetServerOptions(), CDBInterfacesFileConnParams::GetServerType(), CWorkbench::GetService(), SNetStorageRPC::GetServiceIfLocator(), CNSTServiceRegistry::GetServiceProperties(), CNetScheduleServer::GetServiceToQueueSectionConfig(), CBamRefSeqInfo::GetShortSeqBlobId(), CViewManagerService::GetSingletonView(), CTSE_Split_Info::GetSkeletonChunk(), CCdDbPriority::GetSourceCode(), CAutoDefModifierCombo::GetSourceDescriptionString(), CDllSrcFilesDistr::GetSourceLib(), CNCDistributionConf::GetSrvIdByIP(), CQueue::GetStatusAndLifetime(), CQueue::GetStatusAndLifetimeAndTouch(), CPtbRegistry::GetString(), CCommentItem::GetStringForRefSeqGenome(), CRowStyleCatalog::GetStyleForRow(), CCategoryConfig::GetSubcategory(), CConfigRegistry::GetSubConfig(), NMacroUtil::GetSVPartFromString(), CGencollIdMapper::GetSynonyms(), CTaxNRCriteria::GetTaxIdForId(), CTaxonCache::GetTaxname(), CNcbiTestApplication::GetTestUnit(), CMsvcSite::GetThirdPartyLibBin(), CMacroEngine::GetTmpRTVarObject(), CMacroResolver::GetTmpRTVarObject(), CNSAffinityRegistry::GetTokenByID(), CCassConnection::GetTokenRanges(), CDataMiningService::GetToolByName(), CUIToolRegistry::GetToolId(), CUIToolRegistry::GetToolNames(), CGuiObjectInfoClone::GetToolTip(), CTrackConfigManager::GetTrackFactory(), CCgiResponse::GetTrailerValue(), CThreadLocalTransactional::GetTransaction(), CUnicodeToAsciiTranslation::GetTranslation(), CDataSource::GetTSE_LoadLockIfLoaded(), CDataSource::GetTSESetWithBioseqAnnots(), CDataSource::GetTSESetWithOrphanAnnots(), CPSG_Blob_Task::GetTSESlot(), CNSTServiceRegistry::GetTTL(), CStdAnnotTypes::GetTypeAsInt(), CLabel::GetTypeIconAlias(), CFeatureMap::GetTypeMapFor(), CPhrap_Seq::GetUnpaddedPos(), CUpdateMultipleSeq_Input::GetUpdateInput(), CNSAlerts::GetURLEncoded(), CRootTextItem::GetUserObject(), CHttpHeaders::GetValue(), CSimpleMakeFileContents::GetValue(), CPageStat::GetValue(), CGridTableSeqIds::GetValue(), CAlnTableDS::GetValueAt(), CEnumeratedTypeValues::GetValueFlags(), CGtfAttributes::GetValues(), CCompareWithBiosample::GetValuesTableFromSeqEntry(), CRegexpTemplateTester::GetVar(), CNSClientsRegistry::GetWaitAffinities(), CWGSDataLoader_Impl::GetWGSFile(), IEditingActionFeat::GoToProtFeature(), CGencollIdMapper::Guess(), CTSE_Info::HasAnnot(), CGridCgiContext::HasCtgTime(), CSimpleMakeFileContents::HasDefinition(), IDBServiceMapper::HasExclusions(), CDBUDRandomMapper::HasExclusions(), CBioTreeFeatureDictionary::HasFeature(), CDomainStorage::HasField(), CLabel::HasHandler(), CSeqTestContext::HasKey(), CLabelDescriptionCacheImpl::HasLabel(), CEventHandler::HasListener(), CReverseObjectStore< TKey, TObject >::HasObject(), CDRefresher::hasOlderVersion(), CReadBlastApp::hasProblems(), CWorkbench::HasService(), CHistParamsManager::HasSettings(), ResidueProfiles::HasUnqualAfterIndex(), CHttpHeaders::HasValue(), CGtfAttributes::HasValue(), CCgiResponse::HaveHeaderValue(), CCgiResponse::HaveTrailer(), SCommandLineParserImpl::Help(), CScoreLookup::HelpText(), CAlignFormatUtil::HspListToHitMap(), UpdateViewer::ImportStructure(), CQualLookupMap::IncrementalUpdate(), SBDB_CacheStatistics::Init(), CSGAlignmentDS::InitAlignQualityScore(), CSGAlignmentDS::InitAlignScoreCache(), CAlignCollapser::InitContig(), CCdDbPriority::Initialize(), CTaxonCache::Initialize(), CNCDistributionConf::InitMirrorConfig(), CGuidGenerator::Insert(), CRangeMap< Mapped, Position >::insert(), CRangeMultimap< Mapped, Position >::insert(), CAlignResultsSet::Insert(), CMultAlign::InsertDashesInBase(), CProjBulderApp::InsertDep(), CGapCache::IsGap(), isGoodIntron(), CAttribTableColumnIdPanel::IsInputValid(), COrgMod::IsInstitutionCodeValid(), CScoreLookup::IsIntegerScore(), pub_report::CSkipPubJournalHook::IsJournalMissing(), CNSTServiceRegistry::IsKnown(), CGapCache::IsKnownGap(), CMsvcSite::IsLibOk(), CInfoCache< KeyType, DataType >::IsLoaded(), CNWFormatter::SSegment::IsLowComplexityExon(), CBLASTParams::IsNucDatabase(), CBLASTParams::IsNucInput(), CStdAnnotTypes::IsPredefinedDescr(), CStdAnnotTypes::IsPredefinedDescrForType(), CPriorityTaxNodes::IsPriorityTaxnode(), CNCBlobAccessor::IsPurged(), CNSClientsRegistry::IsRequestedAffinity(), CRequestContext::IsSetProperty(), CColumnValidatorRegistry::IsSupported(), CHistParamsManager::IsTempSettings(), CSeqUtils::isTopLevel(), CGapCache::IsUnknownGap(), CEnumeratedTypeValues::IsValidName(), CStdAnnotTypes::IsValidType(), CStdAnnotTypes::IsValidTypeStr(), CQueue::JobDelayExpiration(), CQueue::JobDelayReadExpiration(), CMatchFeatureTableDlg::LinearAutomatch(), CmRNACDSLinker::LinkByProduct(), CAgpConverter::LoadChromosomeMap(), CTraceDataProxy::LoadData(), CSGTraceGraphDS::LoadData(), CProjBulderApp::LoadDepGraph(), CLayoutTrack::LoadProfile(), CBamRefSeqInfo::LoadSeqChunk(), CCleanupHugeAsnReader::LoadSeqEntry(), CSmallDNS::LocalBackResolveDNS(), CSmallDNS::LocalResolveDNS(), CChain::MainPeaks(), CGtfRecord::MakeChildRecord(), ResidueProfiles::makeConsensus(), CFeatureTableReader::MakeGap(), MakePluginManagerParamTree(), CCleanup::MakeSmallGenomeSet(), CGencollIdMapper::Map(), CGnomonAnnotator_Base::MapOneModelToOrigContig(), AlignmentCollection::mapRows(), CHTMLBasicPage::MapTag(), CNSClientsRegistry::MarkAsAdmin(), CAlignMarkHandler::MarkRow(), CAlignMarkHandler::MarkRowSeq(), CSelectionEvent::Match(), CAlignFilter::Match(), IFunctionLog::Merge(), CFeatTableEdit::MergeFeatures(), MostFrequentGapSize(), CPaintSequence::MouseToFeature(), CNSClientsRegistry::MoveJobToBlacklist(), CFeatureTableReader::MoveRegionsToProteins(), CUIToolRegistry::MRUListExists(), CBLASTParams::NeedsDbGeneticCode(), CBLASTParams::NeedsQueryGeneticCode(), CBLASTParams::NeedsThreshold(), neighbor_query(), CBlobSplitterImpl::NextChunk(), CGtfIdGenerator::NextId(), CInterfaceRegistry::ObjectHasInterface(), CWordSubstitutionDlg::OnAdd(), CObjectListWidgetSel::OnAddAccessionClick(), CFeatureGraph::OnAJNotification(), CCompareWithBiosample::OnClickOk(), CFarPointerSeq::OnExport(), ViewerWindowBase::OnFindPattern(), CAgpValidateReader::OnGapOrComponent(), CUpdateMultiSeq_Dlg::OnIdle(), CAlignTabExportPage2::OnIdle(), CMacroFlowEditor::OnLibToScript(), CMacroFlowEditor::OnLibToScriptUpdate(), CSuspectProductRulesEditor::OnListMatches(), CUpdateMultiSeq_Dlg::OnLoadMapClick(), CUpdateMultiSeq_Dlg::OnMapSelectionClick(), CPaintSequence::OnMouseClick(), CAgpValidateReader::OnObjectChange(), CMacroParamsPanel::OnPropertyChanged(), CMacroFlowEditor::OnRecent(), CMinPanelContainer::OnRestoreWindow(), CAgpValidateReader::OnScaffoldEnd(), CFileSubpanel::OnSelectButton(), CFieldSubpanel::OnSelectButton(), CMolInfoSubpanel::OnSelectButton(), CMacroFlowEditor::OnTreectrlItemActivated(), CMacroFlowEditor::OnTreectrlItemDrag(), CMacroFlowEditor::OnTreectrlItemDrop(), CClickableSortUniqueCount::OnTreeSelectionChanged(), CApplyEditconvertPanel::OnUndoButtonClick(), CUpdateMultiSeq_Dlg::OnUpdateAllSequenceClick(), CBAMDataLoader_Impl::OpenBAMFilesOnce(), CQueueDataBase::OpenQueue(), CAnnotObject_Less::operator()(), CAnnotObject_LessReverse::operator()(), CRepeatToFeat::operator()(), CSGQueryNodePreprocessor::operator()(), CIdErrorReporter::operator()(), STreeNodeMapper::operator()(), CWriteDB_PackedSemiTree::Iterator::operator++(), CScoreVector< Key, Score >::operator-=(), operator==(), CAlnIdMap< _TAlnVec, TAlnSeqIdExtract >::operator[](), CArgumentList::operator[](), dup_lookup_table::operator[](), CSeqTestContext::operator[](), CLogLatencies::Parse(), SCommandLineParserImpl::ParseAndValidate(), CNetStorageObjectLoc::ParseFileTrackSite(), CFastaReader::ParseGapLine(), CVcfVariant::ParseInfoColumns(), STrackSettings::ParseSettings(), CMakefilePatch::PatchTreeMakefiles(), CChain::PeaksAndLimits(), CNCPeerControl::Peer(), CEditingBtnsPanel::PlaceButtons(), CFixForTransSplicing::PopulateListBox(), CCgi2RCgiApp::PopulatePage(), CChangeStructuredCommentKeyword::PrefixToKeyword(), SGFFrec::print(), CQueueDataBase::PrintJobCounters(), CQueue::PrintJobDbStat(), CQueueDataBase::PrintJobsStat(), CDataTypeModule::PrintSampleDEF(), CNCPeerControl::PrintState(), SBDB_CacheUnitStatistics::PrintStatistics(), CQueueDataBase::PrintStatistics(), CNCPeerControl::PrintSyncStat(), CNCStat::PrintToSocket(), CQueueDataBase::PrintTransitionCounters(), CArgDependencyGroup::PrintUsage(), CCommandArgDescriptions::PrintUsage(), CCommandArgDescriptions::PrintUsageXml(), CArgDependencyGroup::PrintUsageXml(), SH2S_IoCoordinator::Process(), CReadBlastApp::ProcessCDD(), CProjectTreeBuilder::ProcessDir(), WSDLParser::ProcessEndpointTypes(), XSDParser::ProcessNamedTypes(), Messenger::ProcessRedraws(), CID2SNPProcessor_Impl::ProcessReply(), ProcessSeqEntryAnnot(), CFeaturePropagator::PropagateFeatureList(), CNCBlobAccessor::Purge(), CAlnIdMap< _TAlnVec, TAlnSeqIdExtract >::push_back(), CVariantDescriptors::PushBack(), DTDParser::PushEntityLexer(), CDeleteQueue< const CTSE_ScopeInfo *, CTSE_ScopeInternalLock >::Put(), CReverseObjectStore< TKey, TObject >::PutObject(), CQueue::PutProgressMessage(), CAlignResultsSet::QueryExists(), CQueueDataBase::QueueExists(), CQueueDataBase::QueueInfo(), CBLASTToolManager::QuickLaunch(), CProjBulderApp::RankDepGraph(), CGFFReader::Read(), CSeqDBAliasSets::ReadAliasFile(), CMultiReader::ReadAlignment(), CQueue::ReadAndTouchJob(), CReadBlastApp::ReadBlast(), CNSTServiceRegistry::ReadConfiguration(), SQueueParameters::ReadLinkedSections(), CObjectIStreamXml::ReadName(), SQueueParameters::ReadQueue(), CReadBlastApp::ReadRRNA2(), CNetScheduleServer::ReadServicesConfig(), CReadBlastApp::ReadTagMap(), CSeq_entry::ReassignConflictingIds(), FileMessenger::ReceiveCommands(), CNCDistributionConf::ReConfig(), CNCPeriodicSync::ReConfig(), CMSHit::RecordMatches(), CQueue::RedoJob(), SeqTreeAsnizer::refillAsnMembership(), CColumnValidatorRegistry::Register(), CBioTreeFeatureDictionary::Register(), CNSClientsRegistry::RegisterBlacklistedJob(), CAppJobDispatcher::RegisterEngine(), CViewManagerService::RegisterFactory(), CNSClientsRegistry::RegisterJob(), CBlastMasterNode::RegisterNode(), CWriteObjectList::RegisterObject(), CWorkbench::RegisterService(), CNSClientsRegistry::RegisterSocketWriteError(), CNSTClientRegistry::RegisterSocketWriteError(), CUIToolRegistry::RegisterTemplateTool(), CDataMiningService::RegisterTool(), CUIToolRegistry::RegisterTool(), CNCBlobStorage::ReleaseCacheData(), CObjectManager::ReleaseDataSource(), CReverseObjectStore< TKey, TObject >::ReleaseObject(), CGtfAttributes::Remove(), CCgiSession_NetCache::RemoveAttribute(), CEditingBtnsPanel::RemoveButton(), CGraphCache< TData >::RemoveData(), CScope_Impl::RemoveDataLoader(), CSimpleMakeFileContents::RemoveDefinition(), CAlignDistGraph::RemoveEquivs(), CScope_Impl::RemoveFromHistory(), NWinHook::CHookedFunctions::RemoveHook(), CReadBlastApp::RemoveInterim2(), CNSGroupsRegistry::RemoveJob(), CNSScopeRegistry::RemoveJob(), CNSAffinityRegistry::RemoveJobFromAffinity(), CEventHandler::RemoveListener(), CSGDataSourceContext::RemoveNonAsnData(), CReadBlastApp::RemoveProblems(), CWindowManagerService::RemoveToolBarContext(), CThreadLocalTransactional::RemoveTransaction(), CGtfAttributes::RemoveValue(), CSeqGraphicPane::RenameMarker(), CAlignMarkHandler::Render(), SPSGS_AnnotRequest::ReportBlobError(), CReadBlastApp::reportProblems(), SPSGS_AnnotRequest::ReportResultStatus(), CQueue::RereadJob(), CQueue::RescheduleJob(), CBLASTParams::ResetCurrParams(), CSymResolver::Resolve(), CDataTypeModule::Resolve(), CNSAffinityRegistry::ResolveAffinity(), CNSAffinityRegistry::ResolveAffinityToken(), CCodeGenerator::ResolveFileName(), IMacroFunctionContext::ResolveFunctionName(), CNSGroupsRegistry::ResolveGroup(), CSysPath::ResolvePath(), SeqTreeAsnizer::resolveRowId(), CNetScheduleServer::ResolveService(), CSoMap::ResolveSoAlias(), CNSGroupsRegistry::RestrictByGroup(), CQueue::ReturnJob(), CFileDBEngine::RollbackTransaction(), CAnnotMetaDataJob::Run(), CAgpFastaComparator::Run(), CProjBulderApp::Run(), CEditingBtnsPanel::RunMacro(), CEditingBtnsPanel::RunMacroWithReport(), s_AddProjItemToDll(), s_CleanupOrgModAndSubSourceOther_helper(), s_CompareEvents(), s_CompareOverlapping(), NAdapterSearch::CSimpleUngappedAligner::s_CoordSetToMapIndex(), s_DivvyUpAlignments_ProcessAnnot_Dendiag(), s_DivvyUpAlignments_ProcessAnnot_Denseg(), s_EquivalentExts(), s_EquivalentScores(), s_ExpandSubNodes(), s_FindServerSlot(), s_GBSeqStrandedness(), s_GetBestSynonym(), s_GetBlobs(), s_GetBucketCache(), s_GetDBFile(), s_GetDBFileNoLock(), s_GetDBFileTry(), s_GetFont(), CMacroMatcherPanelBase::s_GetMatcherPanels(), s_GetMatchingSequence(), s_GetSynHandle(), s_GetTopology(), s_GetUncoveredLength(), CMiscSeqTable::s_GetValueToSehMap(), s_HasPrefixMatch(), s_InitFeatures(), CFixFeatureId::s_MakeIDPairs(), s_NormalizeSuffix(), CBinaryRangeCacheWithLock< Position, Value >::s_Overlaps(), s_ReadHeader(), CFixFeatureId::s_ReassignFeatureIds(), s_RemoveAnnot(), s_ReplaceFeatureIdXref(), s_SetDeflineBits(), s_SetDeflineLeafs(), s_ShouldFetchOneByOne(), s_SpecialFind(), s_SpliceAnnotsForSeqId(), s_Test_Extremes(), s_Test_Interval(), s_Test_Subset(), s_UpdateFeatureId(), UpdateViewer::SaveAlignments(), CLayoutTrack::SaveProfile(), CEditingBtnsPanel::SaveSettings(), SComparison::SComparison(), SeqItem::select(), SChunkAnnots::Select(), SeqTree::selectByRowID(), SeqTree::selectByTax(), NSnpGui::SelectClinSigTerm(), CScriptPanel::SelectMacro(), CScriptPanel::SelectMacros(), FileMessenger::SendCommand(), FileMessenger::SendReply(), SeqAnnotMapSeqId(), SeqDB_MapFind(), CCdDbPriority::SeqIdTypeToPriority(), SeqLocMapperToPairwiseAligns(), CNSTAlerts::Serialize(), CNSTClientRegistry::Serialize(), CNSTServiceRegistry::Serialize(), SerializePauseState(), CNcbiEnvironment::Set(), CSDB_ConnectionParam::Set(), CAlignmentCollectionScore::Set(), CIgBlastTabularInfo::SetAirrFormatData(), CEUtils_Request::SetArgument(), CNSClientsRegistry::SetClientData(), CChain::SetConfirmedEnds(), CNSTClientRegistry::SetDBClientID(), CNSTUserCache::SetDBUserID(), DTDElement::SetDefaultRefsOccurence(), CTSE_ScopeInfo::SetEditTSE(), CQueue::SetJobListener(), CNSClientsRegistry::SetLastScope(), CObjectManager::SetLoaderOptions(), CSeqDB_ColumnEntry::SetMapValue(), CUIToolRegistry::SetMaxMRUSize(), SeqTree::setMembershipColor(), CUIToolRegistry::SetMRUToolNames(), CNSClientsRegistry::SetNodeWaiting(), CQueryImpl::SetNullParameter(), CConversionResultPanel::SetObjects(), CStatement::SetParam(), CQueryImpl::SetParameter(), CDBUDRandomMapper::SetPreference(), CDBUDPriorityMapper::SetPreference(), CNSClientsRegistry::SetPreferredAffinities(), CSearch< LEGACY, NHITS >::SetResult(), CGffBaseRecord::SetScore(), CDesktopCanvas::SetSelectedObjects(), TaxTreeData::setSelections(), CSeq_loc_Mapper_Base::SetSeqTypeById(), CPageStat::SetValue(), CNSAffinityRegistry::SetWaitClientForAffinities(), CImportError::SeverityStr(), ShowHideManager::ShowAlignedDomains(), ShowHideManager::ShowAlignedOrAnnotatedDomains(), ShowHideManager::ShowDomainsWithHighlights(), CLDS2_Annot_Hook::SkipObject(), CStreamState< T >::slot(), CMSPeak::SmartCull(), CFlatParseReport::sMessageTemplateFor(), CSoMap::SoTypeToFeature(), CSoMap::SoTypeToId(), sRunTest(), CNSClientsRegistry::StaleNodes(), CThreadPoolEngine::StartJob(), CReadBlastApp::StoreBlast(), CGffBaseRecord::StrAttributes(), CGtfRecord::StrAttributes(), CGvfWriteRecord::StrAttributes(), CGtfRecord::StrStructibutes(), CNSClientsRegistry::SubtractBlacklistedJobs(), CCachedDictionary::SuggestAlternates(), sUpdateCase(), sx_FindBestId(), sx_ProcessId(), CHitFilter< THit >::sx_TM(), COrg_ref::TableLookup(), CMacroFunction_UpdateProteinSeqs::TheFunction(), CMacroFunction_LookupPub::TheFunction(), CGuiRegistry::ToConfigFile(), CNSClientsRegistry::Touch(), CNSTClientRegistry::Touch(), ResidueProfiles::traverseAlignedColumns(), ResidueProfiles::traverseAllColumns(), TraverseAndRunTestCases(), ResidueProfiles::traverseColumnsOnConsensus(), ResidueProfiles::traverseColumnsOnMaster(), CChainer::CChainerImpl::TrimAlignmentsIncludedInDifferentGenes(), CMemoryFileMap::Unmap(), CColumnValidatorRegistry::UnRegister(), CNSClientsRegistry::UnregisterJob(), CWorkbench::UnRegisterService(), CNcbiEnvironment::Unset(), CNSClientId::Update(), SRemoteNodeData::UpdateBlacklist(), CProjBulderApp::UpdateDepGraph(), CJobGCRegistry::UpdateLifetime(), CRBSubpanel::UpdateList(), UpdateOrgInformation(), CCdsMatchInfo::UpdateOtherMrnas(), CNSClientsRegistry::UpdatePreferredAffinities(), CNCBlobAccessor::UpdatePurgeData(), CJobGCRegistry::UpdateReadVacantTime(), CHttp2Session::UpdateResponse(), CBLASTParams::UseDustFilter(), CSrcWriter::ValidateFields(), CMultAlign::Variations(), CProjectItemsTree::VerifyDataspecProj(), CProjectItemsTree::VerifyExternalDepends(), SMakeProjectT::VerifyLibDepends(), CGff3LocationMerger::VerifyRecordLocation(), CSeqDBAliasNode::WalkNodes(), CMakeProject::Write(), CAsnSubCacheCreateApplication::WriteBlobsInSubCache(), CNCBlobStorage::WriteBlobStat(), CFtableWriteHook::WriteChoiceVariant(), CDescrWriteHook::WriteClassMember(), CNCBlobStorage::WriteDbInfo(), CCgiResponse::WriteHeader(), TaxTreeData::writeOutRanks(), CTSE_Info::x_AddFeaturesById(), CCSraAlignIterator::x_AddField(), CSGAnnotJob::x_AddGraphObject(), CAutoDefModifierCombo::x_AddHIVModifiers(), CAutoDefModifierCombo::x_AddInfluenzaModifiers(), CAppJobDispatcher::x_AddJobRecord(), CFastaReader::x_AddMultiwayAlignment(), CFastaReader::x_AddPairwiseAlignments(), CPhrapReader::x_AddRead(), CAutoDefModifierCombo::x_AddRequiredSubSourceModifiers(), CGencollIdMapper::x_AddSeqToMap(), CHistParamsManager::x_AddSettings(), CAnnot_Collector::x_AddTSE(), CAutoDefModifierCombo::x_AddTypeStrainModifiers(), CAlnTableDS::x_AdjustColumns(), CQueueDataBase::x_AppendDumpLinkedSections(), CTrackConfigManager::x_AppendKeyDisplayOptions(), CTaxValidationAndCleanup::x_ApplySpecificHostMap(), CCountryConflict::x_ApplyToBioSource(), CCountryFixup::x_ApplyToBioSource(), CLatLonTool::x_ApplyToBioSource(), CConsolidateLikeMods::x_ApplyToBioSource(), CNCMessageHandler::x_AssignCmdParams(), CObjectOStreamXml::x_BeginNamespace(), CNSClientsRegistry::x_BuildAffinities(), CObjectConverter::x_BuildGraph(), CTraversalCodeGenerator::x_BuildNameToASNMap(), CLocalTaxon::x_Cache(), CBlobCacher::x_CacheMapRecs(), CBlobCacher::x_CacheMetaRec(), CBlobCacher::x_CacheNextFile(), CNCActiveSyncControl::x_CalcNextTask(), CAlignDistGraph::x_CalculateAllDistances(), CAlignDistGraph::x_CalculateOneDistance(), CFeatureGraph::x_CancelJob(), CQueue::x_CancelJobs(), CQueue::x_ChangeReadingStatus(), CQueue::x_CheckExecutionTimeout(), CFastaReader::x_CheckForPostponedMods(), CBlobCacher::x_CleanOrphanRecs(), CTreeQueryExec::x_ClearBuiltInFunctions(), CScope_Impl::x_ClearCacheOnEdit(), CScope_Impl::x_ClearCacheOnNewData(), CScope_Impl::x_ClearCacheOnRemoveData(), CScope_Impl::x_ClearCacheOnRemoveSeqId(), CSVGRenderer::x_ClippingRect(), CFastaReader::x_CloseGap(), CGBDocument::x_CloseProjectItemViews(), CSGAlignStatJob::x_CollectAlignStats(), CDataSource::x_CollectBlob_ids(), CPhyTreeNodeAnalyzer::x_CombineNodeMaps(), CHttpCookie_CI::x_Compare(), CPSGS_Dispatcher::x_ConcludeIDGetNARequestStatus(), CQueueDataBase::x_ConfigureQueueClasses(), CQueueDataBase::x_ConfigureQueues(), CMatchesListCtrl::x_ConvertAllToByLocation(), CSeq_align_Mapper_Base::x_ConvertSegment(), CSeq_align_Mapper::x_ConvertSegmentCvt(), CPromote::x_CopyCdregionToRNA(), CObjectListWidgetSel::x_CopyUniqueObjects(), CQueueDataBase::x_CountQueuesToAdd(), CSGFeatureJob::x_CreateFeatSmear(), CNSGroupsRegistry::x_CreateGroup(), CTraversalCodeGenerator::x_CreateNode(), CTaxTreeToolJob::x_CreateProjectItems(), CNcbiEncrypt::x_Decrypt(), CNSAffinityRegistry::x_DeleteAffinity(), CQueueDataBase::x_DeleteQueuesAndClasses(), CNSGroupsRegistry::x_DeleteSingleInMemory(), CQueueDataBase::x_DetectChangesInLinkedSection(), CMsvcSite::x_DirExists(), CNCMessageHandler::x_DoCmd_AckAlert(), CNCMessageHandler::x_DoCmd_ReConfig(), CImportFeatTable::x_DoImportCDS(), CQueueDataBase::x_Dump(), CQueue::x_DumpJobs(), CQueueDataBase::x_DumpLinkedSection(), CQueueDataBase::x_DumpQueueOrClass(), CAsnSubCacheCreateApplication::x_EliminateIdsAlreadyInCache(), CMemoryRegistry::x_Enumerate(), CCompoundRWRegistry::x_Enumerate(), CArgDependencyGroup::x_Evaluate(), CShowBlastDefline::x_FillDeflineAndId(), CSDB_ConnectionParam::x_FillLowerParams(), CHttpCookies::x_Find(), CThreadPoolEngine::x_Find(), CMaskedRangeSet::x_FindAndCombine(), CwxAnnotConfigDlg::x_FindAnnot(), CDataSource::x_FindBestTSE(), CTSE_Info::x_FindBioObject(), CDataSource::x_FindBioseq_Info(), CDataSource::x_FindBioseq_set_Info(), CSeqDBAliasSets::x_FindBlastDBPath(), CGencollIdMapper::x_FindChromosomeSequence(), CVectorTrimPanel::x_FindCompleteDeletions(), CObjectManager::x_FindDataSource(), CTaxValidationAndCleanup::x_FindHostFixRequest(), CSeq_id_Local_Tree::x_FindIdInfo(), CSeq_id_General_Tree::x_FindInfo(), CSeq_id_Giim_Tree::x_FindInfo(), CSeq_id_Patent_Tree::x_FindInfo(), CFeatTree::x_FindInfo(), CSeq_id_Textseq_Tree::x_FindMatchByAcc(), CDockContainer::x_FindNodeByWindow(), CGencollIdMapper::x_FindParentSequence(), CQualLookupMap::x_FindRequest(), CSeq_id_Textseq_Tree::x_FindRevMatchByAccPacked(), CPhrapReader::x_FindSeq(), CDataSource::x_FindSeq_annot_Info(), CDataSource::x_FindSeq_entry_Info(), CScope_Impl::x_FindSeq_id_Info(), CPhyTreeFormatter::x_FindSeqType(), CDataSource::x_FindTSE_Info(), CGencollIdMapper::x_FixImperfectId(), CDiskFlusher::x_FlushNextFile(), CSeq_loc_Mapper_Base::x_ForceSeqTypes(), CGuiObjectInfoClone::x_FormatAccessionLinks(), CAnnot_Collector::x_FoundAllNamedAnnotAccessions(), CAlignedFeatureGraph::x_GatherCluster(), CMemoryRegistry::x_Get(), CCompoundRWRegistry::x_Get(), CWindowManager::x_GetActiveClientByWindow(), CNAUtils::x_GetAllGIs(), CTableDataAlnSummary::x_GetAlnSummary(), CSeqDBVol::x_GetAmbigSeq(), CTSE_Info::x_GetAnnotObjs(), CTSE_Info::x_GetBioseq(), CTSE_Info::x_GetBioseq_set(), CId2ReaderBase::x_GetBlobState(), CVcfGlyph::x_GetClinVarToolTip(), CMemoryRegistry::x_GetComment(), CTMgr_AnnotCounts::x_GetCount(), impl::CDriverContext::x_GetCounts(), CId2Reader::x_GetCurrentConnection(), CPubseq2Reader::x_GetCurrentResult(), CSeqGraphicPane::x_GetDefaultMarker(), CGff2Reader::x_GetFeatureById(), CVDBGraphDataLoader_Impl::x_GetFileInfo(), CCleanupHugeAsnReader::x_GetFluLabel(), CLocAndGCodePanel::x_GetGeneticCode(), CSeqGraphicPane::x_GetGlyphByTipId(), CTSE_Info::x_GetIdObjects(), CFeatTree::x_GetInfo(), CTaxonCache::x_GetItem(), CDiagConsoleCache::x_GetItem(), CAppJobDispatcher::x_GetJobRecord(), CQueueDataBase::x_GetLastPurged(), CObjectManager::x_GetLoaderByName(), CMemoryFileMap::x_GetMemoryFileSegment(), CSimpleDictionary::x_GetMetaphoneKeys(), CLocAndGCodePanel::x_GetMitochondrialCode(), CNAUtils::x_GetNAId(), CNAUtils::x_GetNAMetaData(), CQueueDataBase::x_GetNext(), CMergeTree::x_GetNode(), CGeneFileWriter::x_GetNumPubMedLinksForGeneId(), CGeneFileWriter::x_GetOffsetForGeneId(), CGapAnalysis::x_GetOrCreateHistogramBinner(), CAlignGroup::x_GetOrgRef(), CRequestContext::x_GetPassThroughProp(), CSDB_ConnectionParam::x_GetPassword(), CLocAndGCodePanel::x_GetPlastidCode(), CSeq_loc_Mapper_Base::x_GetPrimaryId(), CQueueDataBase::x_GetQueueAt(), CAlignedFeatureGraph::x_GetRecsSortedByLength(), CGridWidget::x_GetRectSelection(), CAppJobDispatcher::x_GetRegisteredEngine(), CGuiRegistry::x_GetRegistryRef(), CUnculturedTool::x_GetReply(), CQueue::x_GetRunningJobsPerClientIP(), CTSE_ScopeInfo::x_GetScopeLock(), CScope_Impl::x_GetSeq_id_Info(), CCompartApp::x_GetSeqLength(), CAlnVec::x_GetSeqVector(), CTSE_Info::x_GetSNP_Info(), CNetScheduleHandler::x_GetStoredSectionValues(), CUIToolRegistry::x_GetToolRecByName(), CTSE_Info::x_GetUnnamedAnnotObjs(), CLDS2_Manager::x_GetUrlHandler(), CLDS2_DataLoader::x_GetUrlHandler(), CDataTypeModule::x_GetVar(), CSeqGraphicPane::x_HasDefaultMarker(), CTSE_Split_Info::x_HasDelayedMainChunk(), CMemoryRegistry::x_HasEntry(), CCompoundRWRegistry::x_HasEntry(), CMultiReader::x_HasExactMatch(), CTSE_Info::x_HasFeaturesWithId(), CAlignMarkHandler::x_HitRangeBorder(), CAlnMixSequences::x_IdentifyAlnMixSeq(), CCommandArgDescriptions::x_IdentifyCommand(), CAlnStats< _TAlnIdVec >::x_IdentifyPotentialAnchors(), CNSAlerts::x_IdToType(), CNSTAlerts::x_IdToType(), CTSE_Info::x_IndexAnnotTSE(), CDataSource::x_IndexTSE(), CAlignMarkHandler::x_InitDeltaMap(), CUnicodeToAsciiTranslation::x_Initialize(), CDBLB_ServiceMapper::x_IsEmpty(), CGencollIdMapper::x_IsExactIdInAssembly(), CGencollIdMapper::x_IsLoc_Int_InAGap(), CRequestContext::x_IsSetPassThroughProp(), CBlastAppArgs::x_IssueWarningsForIgnoredOptions(), CHttpCookie_CI::x_IsValid(), CSVGRenderer::x_LinearGradient(), CMetaRegistry::x_Load(), CAppHitFilter::x_LoadConstraints(), CTSE_Split_Info::x_LoadDelayedMainChunk(), CAppHitFilter::x_LoadIDs(), CSplign::x_LoadSequence(), CVarTrack::x_LoadSettings(), CVcfTrack::x_LoadSettings(), CHTMLPage::x_LoadTemplateLib(), CMacroEngine::x_LocateRTVar(), CMacroResolver::x_LocateRTVar(), CMacroQueryExec::x_LocateRTVar(), BlastdbCopyApplication::x_MakeDBwIDList(), CUpdateMultipleSeq_Input::x_MatchIdsAndAddUpdateToScope(), CAlnMixMerger::x_Merge(), CGff2Reader::x_MergeAlignments(), CAlnMixSegments::x_MinimizeGaps(), CSeqGraphicPane::x_ModifyMarker(), CAlignedFeatureGraph::x_mRNA_CDS_ToBePlaced(), CGeneModelTrack::x_NeedHighlight(), CTSE_Split_Info::x_NeedsDelayedMainChunk(), CHttpCookie_CI::x_Next(), CObjectConverter::x_NormalizeTypeName(), CSeqGraphicPane::x_OnPurgeMarkers(), CAppTaskService::x_OnTaskCanceled(), CAppTaskService::x_OnWakeUpSignal(), CQueueDataBase::x_Open(), CAlignedFeatureGraph::x_PlaceCluster(), CSVGRenderer::x_PolygonStippleToPattern(), CPSGCache_Base< string, shared_ptr< SPsgBlobInfo > >::x_PopFront(), CMacroEditingActionPanel::x_PopulateTreeCtrl(), CArgDescriptions::x_PostCheck(), CBlobCacher::x_PreCacheRecNums(), CHTMLOpenElement::x_PrintBegin(), CPhyTreeNodeAnalyzer::x_PrintNodeMap(), CNSScopeRegistry::x_PrintSelected(), CNSClientsRegistry::x_PrintSelected(), CNSAffinityRegistry::x_PrintSelected(), CNSGroupsRegistry::x_PrintSelected(), CAgpValidateReader::x_PrintTotals(), CGff2Reader::x_ProcessAlignmentScores(), CId2ReaderBase::x_ProcessGetSplitInfo(), CNetStorageHandler::x_ProcessHealth(), CGeneModelFeatJob::x_ProcessLandMarkFeatures(), CNetScheduleHandler::x_ProcessStatistics(), CCleanupHugeAsnReader::x_PruneAndReorderTopIds(), CCleanupHugeAsnReader::x_PruneIfFeatsIncomplete(), CCleanupHugeAsnReader::x_PruneIfSegsMissing(), CNSClientsRegistry::x_PurgeInactiveClients(), CAlnMultiRenderer::x_PurgeRowListMap(), CNSClientsRegistry::x_PurgeWNodesAndReaders(), CSeq_loc_Mapper_Base::x_PushMappedRange(), CQueueDataBase::x_ReadLinkedSections(), CSeqDBColumn::x_ReadMetaData(), CUIToolRegistry::x_ReadToolInfo(), CDBUDRandomMapper::x_RecalculatePreferences(), CCleanupHugeAsnReader::x_RecordFeatureId(), CTSE_Info::x_RegisterBioObject(), CObjectManager::x_RegisterLoader(), CTrackContainer::x_ReinitNATrack(), CGFFReader::x_RemapGeneRefs(), CNSAffinityRegistry::x_RemoveClientFromAffinities(), CAppJobDispatcher::x_RemoveJobRecord(), CSeqGraphicPane::x_RemoveMarker(), CStringConstraintPanel::x_ReplaceChoices(), CAgpValidateApplication::x_ReportFastaSeqCount(), CTSE_Info::x_ResetBioseq_setId(), CTSE_Info::x_ResetBioseqId(), CQueue::x_ResetDueTo(), CRequestContext::x_ResetPassThroughProp(), CMacroEngine::x_ResolveFunctionName(), CTreeQueryExec::x_ResolveFunctionName(), CQueueDataBase::x_RestorePauseState(), CQueueDataBase::x_RestoreRefuseSubmitState(), CObjectManager::x_RevokeDataLoader(), CAssemblyCache::x_Run(), CTSE_ScopeInfo::x_SaveRemoved(), CAlnMixMerger::x_SecondRowFits(), CTaxIdSet::x_SelectBestTaxid(), CBLASTToolManager::x_SelectCompatibleInputObjects(), CMemoryRegistry::x_Set(), CCompoundRWRegistry::x_Set(), CTSE_Info::x_SetAnnotObjs(), CAgpConverter::x_SetChromosomeNameInSourceSubtype(), CBioseq_set_Info::x_SetChunkBioseqs2(), CMemoryRegistry::x_SetComment(), CPubseq2Reader::x_SetCurrentResult(), CGapsEditor::x_SetGapParameters(), CLocAndGCodePanel::x_SetGeneticCode(), CTSE_Info::x_SetIdObjects(), CLocAndGCodePanel::x_SetMitochondrialCode(), CQueryImpl::x_SetOutParameter(), CLocAndGCodePanel::x_SetPlastidCode(), CMappingObjectLoader::x_ShowMappingDlg(), x_SingleRange(), CUpdateMultiSeq_Dlg::x_SkipSelected(), CAlignTabExportPage2::x_StartNAAlignNamesJob(), x_SubAndSort(), x_SubNoSort(), CVectorTrimPanel::x_TrimAlignments(), CVectorTrimPanel::x_TrimSelected(), CVectorTrimPanel::x_TrimSeqGraphs(), CAlignedFeatureGraph::x_TryPlaceCDSFeature(), CDBPoolBalancer::x_TryPool(), DTDParser::x_Type(), CSeq_id_General_Tree::x_Unindex(), CSeq_id_Giim_Tree::x_Unindex(), CSeq_id_Patent_Tree::x_Unindex(), CSeq_id_PDB_Tree::x_Unindex(), CTSE_Info::x_UnindexAnnotTSE(), CDataSource::x_UnindexSplitInfo(), CDataSource::x_UnindexTSE(), CDataSource::x_Unmap(), CTSE_Info::x_UnmapAnnotObject(), CTSE_Info::x_UnregisterBioObject(), CMemoryRegistry::x_Unset(), CSNPDb_Impl::x_Update(), CUpdateMultiSeq_Dlg::x_UpdateAlignmentPanel(), CQueue::x_UpdateDB_ProvideJobNoLock(), CQueue::x_UpdateDB_PutResultNoLock(), CCDSTranslationPanel::x_UpdateForceNear(), CAlignMarkHandler::x_UpdateMarks(), CRawSeqToDeltaSeqByLoc::x_UpdateRows(), CHitMatrixDataSource::x_UpdateScoreMap(), CUpdateMultiSeq_Dlg::x_UpdateSelected(), CTaxValidationAndCleanup::x_UpdateSpecificHostMapWithReply(), CQueueDataBase::x_ValidateConfiguration(), CAgpValidateApplication::x_ValidateFile(), CQueue::x_ValidateMaxJobsPerClientIP(), CAgpConverter::x_VerifyComponents(), CObjectOStreamXml::x_WriteClassNamespace(), CFastaOstream::x_WriteSequence(), CGff3Reader::xAddPendingExon(), CReaderBase::xAddStringFlagsWithMap(), CGvfReadRecord::xAssignAttributesFromGff(), CGff3FlybaseWriter::xAssignDefline(), CGtfWriter::xAssignFeatureAttributeGeneId(), CGff3Writer::xAssignFeatureAttributeParentCds(), CGff3Writer::xAssignFeatureAttributeParentGene(), CGff3Writer::xAssignFeatureAttributeParentMrna(), CGff3Writer::xAssignFeatureAttributeParentpreRNA(), CGff3Writer::xAssignFeatureAttributeParentRegion(), CGff3Writer::xAssignFeatureAttributeParentVDJsegmentCregion(), CGtfWriter::xAssignFeatureAttributeTranscriptId(), CGff3FlybaseWriter::xAssignTaxid(), CVcfReader::xAssignVariantProps(), CVcfReader::xAssignVariantSource(), CGtfReader::xCheckForGeneIdConflict(), CGtfReader::xCreateParentGene(), CGtfReader::xCreateParentMrna(), CSoMap::xFeatureMakeImp(), CSoMap::xFeatureMakeMiscFeature(), CSoMap::xFeatureMakeMiscRecomb(), CSoMap::xFeatureMakeNcRna(), CSoMap::xFeatureMakeProt(), CSoMap::xFeatureMakeRegulatory(), CSoMap::xFeatureMakeRepeatRegion(), CGvfReader::xFeatureSetExt(), CGtfAnnotAssembler::xFeatureSetFeatId(), CGff3Reader::xFeatureSetXrefGrandParent(), CGff3Reader::xFeatureSetXrefParent(), CGtfReader::xFindFeatById(), CGff3Reader::xFindFeatureUnderConstruction(), CSrcWriter::xFormatTabDelimited(), CGtfWriter::xGenericGeneId(), CFeatureMap::xGetCookedFeatureType(), CGff3Reader::xGetPendingExons(), CSoMap::xMapBond(), CSoMap::xMapGeneric(), CSoMap::xMapMiscFeature(), CSoMap::xMapMiscRecomb(), CSoMap::xMapNcRna(), CSoMap::xMapRegulatory(), CSoMap::xMapRepeatRegion(), CSoMap::xMapRna(), CGff2Record::xMigrateAttributes(), CFeatTableEdit::xNextProteinId(), CFeatTableEdit::xNextTranscriptId(), CGff3Reader::xPostProcessAnnot(), CGtfReader::xPostProcessAnnot(), CSrcWriter::xPrepareTableColumn(), CSrcWriter::xProcessFieldNames(), CFeatTableEdit::xRenameFeatureId(), CGff3Reader::xUpdateAnnotCds(), CGff3Reader::xUpdateAnnotExon(), CGff3Reader::xUpdateAnnotGeneric(), CGtfReader::xUpdateAnnotParent(), CGff3Reader::xVerifyCdsParents(), CGff3Reader::xVerifyExonLocation(), CGff3Writer::xWriteFeatureProtein(), CGtfWriter::xWriteRecordsCds(), CWiggleWriter::xWriteTableBedStyle(), CEventHandler::~CEventHandler(), CHTMLBasicPage::~CHTMLBasicPage(), CMacroEngine::~CMacroEngine(), CNRCriteria::~CNRCriteria(), CTaxFormat::~CTaxFormat(), FileMessenger::~FileMessenger(), and IMacroFunctionContext::~IMacroFunctionContext().
◆ equal_range() [1/2]
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◆ erase() [1/2]
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Definition at line 167 of file map.hpp.
Referenced by CPSGBioseqCache::Add(), CPSGAnnotCache::Add(), CCDDBlobCache::Add(), CRangeUnion< CBGZFPos >::add_range(), CCommandArgDescriptions::AddCommand(), CSuspectCompoundConstraintPanel::AddConstraint(), CCompoundConstraintPanel::AddConstraint(), DTDParser::AddElementContent(), CModHandler::AddMods(), CTrackContainer::AddTracks(), CTaxNRCriteria::Apply(), CCdsMatchInfo::AssignMatch(), CCdsMatchInfo::AssignOverlapMatch(), CCdsMatchInfo::AssignXrefMatch(), WSDLParser::BuildDataTree(), CCompactLayout::BuildLayout(), CSGAlignmentDS::CalculateAlignmentScore(), CThreadPoolEngine::CancelJob(), IDBServiceMapper::CleanExcluded(), CHttpCookies::Cleanup(), CRR_MetaInfo< TTraits >::Clear(), CQueryImpl::ClearParameter(), CChain::ClipToPolyA(), CNSScopeRegistry::CollectGarbage(), CFeatureGenerator::SImplementation::ConvertMixedAlignToAnnot(), CPepXML::ConvertModSetting(), CGeneModelFactory::CreateTracks(), CTextPanel::DataLoaded(), CGridCgiContext::DefinePersistentEntry(), CQueue::DeleteBatch(), CJobGCRegistry::DeleteIfTimedOut(), CMacroFlowEditor::DeleteNode(), CDiagContext::DeleteProperty(), CNcbiResourceInfoFile::DeleteResourceInfo(), CGffBaseRecord::DropAttributes(), CAlignResultsSet::DropQuery(), CDeleteQueue< const CTSE_ScopeInfo *, CTSE_ScopeInternalLock >::Erase(), CAnnotPieces::erase(), CReadBlastApp::erase_problems(), CVcfHistogram::EraseCachePerAnnotation(), CAlignCollapser::FilterAlignments(), CWriteObjectList::ForgetObjects(), CBlastMasterNode::FormatResults(), SRemoteNodeData::GCBlacklist(), CPSGBioseqCache::Get(), CDeleteQueue< const CTSE_ScopeInfo *, CTSE_ScopeInternalLock >::Get(), CPSGAnnotCache::Get(), SBamIndexRefIndex::GetAlnOverStarts(), CAlignDistGraph::GetAndRemoveNearestPair(), CSGSegmentSmearJob::GetAnnotNames(), CDataSource_ScopeInfo::GetBlobs(), CCdFromFasta::GetColumnsReadFromFile(), CSGDataSourceContext::GetDS(), CScope_Impl::GetEditHandle(), CClassTypeInfoBase::GetMayContainType(), SBDB_CacheStatistics::Init(), CLayoutTrack::LoadProfile(), CFeatureTableReader::MoveRegionsToProteins(), CPrefetchTokenOld_Impl::NextBioseqHandle(), CWNJobWatcher::Notify(), CMacroWordSubstitutionDlg::OnAdd(), CFeatureGraph::OnAJNotification(), CMacroFlowEditor::OnDeleteFromLibrary(), CUpdateMultiSeq_Dlg::OnLoadMapClick(), CUpdateMultiSeq_Dlg::OnMapSelectionClick(), CMacroWordSubstitutionDlg::OnRemove(), CWordSubstitutionDlg::OnRemove(), CCompoundConstraintPanel::OnRemoveConstraint(), CSuspectCompoundConstraintPanel::OnRemoveConstraint(), CMacroWordSubstitutionDlg::OnRemoveFromFile(), CUpdateMultiSeq_Dlg::OnRemoveIdenticalsClick(), SH2S_Session::OnReset(), SH2S_Session::OnStreamClose(), CSeqGraphicPane::OnTipRemoved(), CUpdateMultiSeq_Dlg::OnUpdateAllSequenceClick(), CObjectManagerEngine::PrefetchNotify(), printGFF3(), WSDLParser::ProcessEndpointTypes(), CBlastMasterNode::Processing(), CNCBlobAccessor::Purge(), CAlnIdMap< _TAlnVec, TAlnSeqIdExtract >::push_back(), CDeleteQueue< const CTSE_ScopeInfo *, CTSE_ScopeInternalLock >::Put(), CBlastQueryFilteredFrames::Release(), CObjectManager::ReleaseDataSource(), CReverseObjectStore< TKey, TObject >::ReleaseObject(), CTSE_ScopeInfo::ReleaseUsedTSEs(), CCompoundRegistry::Remove(), CGtfAttributes::Remove(), CCgiSession_NetCache::RemoveAttribute(), CEditingBtnsPanel::RemoveButton(), CGraphCache< TData >::RemoveData(), CScope_Impl::RemoveDataLoader(), CSimpleMakeFileContents::RemoveDefinition(), RowSourceTable::removeEntriesForCD(), CAlignDistGraph::RemoveEquivs(), CExtensionPoint::RemoveExtension(), CExtensionRegistry::RemoveExtensionPoint(), CScope_Impl::RemoveFromHistory(), CDataSource_ScopeInfo::RemoveFromHistory(), CCgiResponse::RemoveHeaderValue(), NWinHook::CHookedFunctions::RemoveHook(), CThreadPoolEngine::RemoveJobRecord(), CEventHandler::RemoveListener(), CTSE_LockSet::RemoveLock(), CSGDataSourceContext::RemoveNonAsnData(), CSubjectRangesSet::RemoveSubject(), CWindowManagerService::RemoveToolBarContext(), CScope_Impl::RemoveTopLevelSeqEntry(), CCgiResponse::RemoveTrailer(), CGtfAttributes::RemoveValue(), CSeqGraphicPane::RenameMarker(), CScope_Impl::ResetScope(), CObjectManager::RevokeDataLoaders(), s_DeleteDBFile(), s_ExpandSubNodes(), s_ModifyMap(), s_OpenIndexDB(), s_ReadAAIndex(), s_ReadHeader(), s_RemoveAnnot(), CEUtils_Request::SetArgument(), SNetScheduleAPIImpl::SetAuthParam(), CRR_MetaInfo< TTraits >::SetFieldName(), SetMapElement(), SetMapString(), CSeqDBVol::SetOffsetRanges(), CDBUDRandomMapper::SetPreference(), CPageStat::SetValue(), CBlobSplitterImpl::SplitPieces(), CGvfWriteRecord::StrAttributes(), CDiscrepancyVisitorImpl< _Name >::Summarize(), CLocksMonitor::Unlocked(), CMemoryFileMap::Unmap(), CMemoryFileMap::UnmapAll(), CAlignMarkHandler::UnMarkAll(), CAlignMarkHandler::UnMarkSelected(), CColumnValidatorRegistry::UnRegister(), CBioTreeFeatureDictionary::Unregister(), CWindowManager::UnRegisterActiveClient(), CWorkbench::UnRegisterService(), CNcbiEnvironment::Unset(), CRequestContext::UnsetProperty(), SRemoteNodeData::UpdateBlacklist(), CHttp2Session::UpdateResponse(), CAsnSubCacheCreateApplication::WriteBlobsInSubCache(), CGencollIdMapper::x_AddSeqToMap(), CNCMessageHandler::x_AssignCmdParams(), CFeatureGraph::x_CancelJob(), CFastaReader::x_CheckForPostponedMods(), CScope_Impl::x_ClearCacheOnEdit(), CScope_Impl::x_ClearCacheOnRemoveData(), CScope_Impl::x_ClearCacheOnRemoveSeqId(), CPSGS_Dispatcher::x_ConcludeIDGetNARequestStatus(), CTraversalCodeGenerator::x_CreateNode(), CNSAffinityRegistry::x_DeleteAffinity(), CSelectionControl::x_DeleteItem(), CQueueDataBase::x_DeleteQueuesAndClasses(), CNSGroupsRegistry::x_DeleteSingleInMemory(), CDockContainer::x_DestroyNode(), CGBDocument::x_DetachView(), CViewManagerService::x_DoRemoveViewFromWorkbench(), CDataSource::x_DropTSE(), CAsnSubCacheCreateApplication::x_EliminateIdsAlreadyInCache(), CObjectOStreamXml::x_EndNamespace(), CPSGCache_Base< string, shared_ptr< SPsgBlobInfo > >::x_Erase(), CAsnSubCacheCreateApplication::x_FetchMissingBlobs(), CBulkCleaner::x_FinishSession(), CInfoCache< KeyType, DataType >::x_ForgetInfo(), CCacheWithLock< Key, Value, Less >::x_GC(), CBinaryRangeCacheWithLock< Position, Value >::x_GC(), CLoadInfoMap< Key, Info >::x_GC(), CDiagConsoleCache::x_GetItem(), CTSE_Info::x_GetSNP_Info(), CMultiReader::x_HasExactMatch(), CMultiReader::x_HasMatch(), CDBLB_ServiceMapper::x_IsEmpty(), CTaxFormat::x_LoadTaxTree(), CSeqGraphicPane::x_ModifyMarker(), CSeqGraphicPane::x_OnPurgeMarkers(), CAppTaskService::x_OnTaskCanceled(), CThreadPoolEngine::x_OnTaskStatusChange(), CAppTaskService::x_OnWakeUpSignal(), CPSGCache_Base< string, shared_ptr< SPsgBlobInfo > >::x_PopFront(), CGff2Reader::x_ProcessAlignmentScores(), CId2ReaderBase::x_ProcessGetSplitInfo(), CCleanupHugeAsnReader::x_PruneAndReorderTopIds(), CCleanupHugeAsnReader::x_PruneIfFeatsIncomplete(), CCleanupHugeAsnReader::x_PruneIfSegsMissing(), CNSClientsRegistry::x_PurgeInactiveClients(), CAlnMultiRenderer::x_PurgeRowListMap(), CNSClientsRegistry::x_PurgeWNodesAndReaders(), CNCMessageHandler::x_ReadCommand(), CTrackContainer::x_ReinitNATrack(), CTSE_Info::x_RemoveAnnotObjs(), CId1Reader::x_RemoveConnectionSlot(), CId2Reader::x_RemoveConnectionSlot(), CPubseqReader::x_RemoveConnectionSlot(), CPubseq2Reader::x_RemoveConnectionSlot(), CAppJobDispatcher::x_RemoveJobRecord(), CTSE_Info::x_ResetBioseq_setId(), CTSE_Info::x_ResetBioseqId(), CRequestContext::x_ResetPassThroughProp(), CObjectManager::x_RevokeDataLoader(), CTSE_ScopeInfo::x_SaveRemoved(), CBLASTToolManager::x_SelectCompatibleInputObjects(), CCompoundRWRegistry::x_Set(), CMemoryRegistry::x_SetComment(), CUpdateMultiSeq_Dlg::x_SkipSelected(), CSGFeatureJob::x_SortFeature_recursive(), CBulkCleaner::x_StartSession(), CTSE_Split_Info::x_TSEDetach(), CSeq_id_int_Tree::x_Unindex(), CSeq_id_Textseq_Tree::x_Unindex(), CSeq_id_Local_Tree::x_Unindex(), CSeq_id_General_Tree::x_Unindex(), CSeq_id_Giim_Tree::x_Unindex(), CSeq_id_Patent_Tree::x_Unindex(), CSeq_id_PDB_Tree::x_Unindex(), CTSE_Info::x_UnindexAnnotTSE(), CDataSource::x_UnindexSplitInfo(), CDataSource::x_UnindexTSE(), CDataSource::x_Unmap(), CTSE_Info::x_UnmapAnnotObject(), CTSE_Info::x_UnregisterBioObject(), CMemoryRegistry::x_Unset(), SRemoteNodeData::x_UpdateBlacklist(), CVcfReader::xAssignVariantProps(), CVcfReader::xAssignVariantSource(), CGff3Reader::xGetPendingExons(), CGff2Record::xMigrateAttributes(), CFeatTableEdit::xRenameFeatureId(), CJobRunRegistration::~CJobRunRegistration(), and CObjectManager::~CObjectManager().
◆ find() [1/2]
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Definition at line 153 of file map.hpp.
Referenced by CDisambiguator::Add(), CAlnMixSequences::Add(), CPSGBioseqCache::Add(), CAlnMix::Add(), CPSGAnnotCache::Add(), CCDDBlobCache::Add(), CAlignCollapser::AddAlignment(), CMultiReader::AddAnnotToMap(), CGffBaseRecord::AddAttribute(), CGffBaseRecord::AddAttributes(), CNSClientsRegistry::AddBlacklistedJobs(), SequenceDisplay::AddBlockBoundaryRows(), CNSTClientRegistry::AddBytesRead(), CNSTClientRegistry::AddBytesRelocated(), CNSTClientRegistry::AddBytesWritten(), CBLAST_Dlg_Item::AddChild(), CTSE_Split_Info::AddChunk(), CNSAffinityRegistry::AddClientToAffinities(), CNSAffinityRegistry::AddClientToAffinity(), CArgDescriptions::CPrintUsage::AddCommandDescription(), CCriteriaSet::AddCriteria(), CProjectTreeBuilder::AddDatatoolSourcesDepends(), CQualLookupMap::AddDesc(), CExtensionPoint::AddExtension(), CQualLookupMap::AddFeat(), CFeatureMap::AddFeature(), CBuildDatabase::AddIds(), CMsvcPrjProjectContext::AdditionalLinkerOptions(), CNSGroupsRegistry::AddJob(), CNSScopeRegistry::AddJob(), CNSScopeRegistry::AddJobs(), CNSGroupsRegistry::AddJobs(), CNSAffinityRegistry::AddJobToAffinity(), CNSGroupsRegistry::AddJobToGroup(), SGridWorkerNodeImpl::AddJobWatcher(), CSUCBlock::AddLine(), CModHandler::AddMods(), CNSTClientRegistry::AddObjectsDeleted(), CNSTClientRegistry::AddObjectsRead(), CNSTClientRegistry::AddObjectsRelocated(), CNSTClientRegistry::AddObjectsWritten(), CQualLookupMap::AddOrg(), CGff3LocationMerger::AddRecordForId(), CGtfLocationMerger::AddRecordForId(), SAccGuide::AddRule(), CImportFeatTable::AddSeqAnnotToSeqEntry(), CBuildDatabase::AddSequences(), CQualLookupMap::AddString(), CGtfLocationMerger::AddStubForId(), CClickableSortUniqueCount::AddToBulkEditList(), CClickableSortUniqueCount::AddToListCtrl(), CWindowManagerService::AddToolBarContext(), CUIToolRegistry::AddToolToMRU(), CNSClientsRegistry::AddToSubmitted(), CViewManagerService::AddToWorkbench(), CTrackContainer::AddTracks(), CRootTextItem::AddUserObject(), CGtfAttributes::AddValue(), ResidueProfiles::adjustConsensusAndGuide(), SMakeProjectT::AnalyzeMakeIn(), CForeignContaminationScreenReportReader::AnnotateOrRemove(), CSymResolver::Append(), CReadBlastApp::append_misc_feature(), AppendChildrenToTree(), CUpdateMultipleSeq_Input::AppendOld_UpdateSeqPairs(), CNSClientsRegistry::AppendType(), CNSTClientRegistry::AppendType(), CAddFluComments::Apply(), CConvertSelectedGaps::apply_impl(), CEditSelectedGaps::apply_impl(), CSpecificHostMapForFix::ApplyToOrg(), CRemoveDuplicateStructuredComment::ApplyToUserObject(), CGvfReadRecord::AssignFromGff(), CCdsMatchInfo::AssignOverlapMatch(), CCdsMatchInfo::AssignXrefMatch(), CBlobSplitterImpl::AttachToSkeleton(), CNCBINode::AttributeIsOptional(), CObjectOStreamXml::BeginChoiceVariant(), CObjectOStreamXml::BeginClassMember(), ASNParser::BeginComponentsDefinition(), CMappingRanges::BeginMappingRanges(), CSeq_loc_Conversion_Set::BeginRanges(), BOOST_AUTO_TEST_CASE(), WSDLParser::BuildDataTree(), CProjectTreeBuilder::BuildProjectTree(), CNSAffinityRegistry::CanAccept(), CNSGroupsRegistry::CanAccept(), CNSScopeRegistry::CanAccept(), CQueue::Cancel(), CObjectManagerEngine::CancelJob(), CAppTaskService::CancelTask(), CNSClientsRegistry::CancelWaiting(), CViewManagerService::CanCreateView(), CGencollIdMapper::CanMeetSpec(), CAutoSqlCustomField::CAutoSqlCustomField(), CCgiEnvHolder::CCgiEnvHolder(), CJobGCRegistry::ChangeAffinityAndGroup(), CGffIdTracker::CheckAndIndexRecord(), CAgpValidateReader::CIdsNotInAgp::CheckIds(), CGffIdTracker::CheckIntegrity(), CQueue::CheckJobsExpiry(), CDataTypeModule::CheckNames(), CNSAffinityRegistry::CheckRemoveCandidates(), CNSGroupsRegistry::CheckRemoveCandidates(), CDataType::ClassName(), CQualCleanup::CleanAndValidate(), CDBUDRandomMapper::CleanExcluded(), CHttpCookies::Cleanup(), CHttpHeaders::Clear(), CNSClientsRegistry::ClearClient(), CQueryImpl::ClearParameter(), NSnpGui::ClinSigFromString(), CChain::ClipLowCoverageUTR(), CPhyloTreeDataSource::Clusterize(), CMsvcPrjProjectContext::CMsvcPrjProjectContext(), CRegExFSA::Collect(), CProjBulderApp::CollectDep(), CollectDllsDepends(), CNSAffinityRegistry::CollectGarbage(), CNSGroupsRegistry::CollectGarbage(), CProjBulderApp::CollectLibToLibDependencies(), CFixForTransSplicing::CollectProteinNames(), CSeq_loc_Mapper_Base::CollectSynonyms(), CSimpleMakeFileContents::CollectValues(), CTaxNRCriteria::CompareItems(), CSeqDBAliasNode::CompleteAliasFileValues(), CScoreLookup::Complexity(), CSeqDBAliasNode::ComputeMasks(), CSubtreeBoundary::ComputeShapes(), CDeleteQueue< const CTSE_ScopeInfo *, CTSE_ScopeInternalLock >::Contains(), CTSE_Info::ContainsBioseq(), RowSourceTable::convertFromCDRow(), RowSourceTable::convertFromCDRows(), CFeatureGenerator::SImplementation::ConvertMixedAlignToAnnot(), CPepXML::ConvertModifications(), CPepXML::ConvertModSetting(), CReadBlastApp::CopyInfoFromGenesToProteins(), CHttpHeaders::CountValues(), SMakeProjectT::Create3PartyLibs(), CreateAnchoredAlnFromAln(), CCommandArgDescriptions::CreateArgs(), CCompareWithBiosample::CreateBiosampleUpdateWebService(), CUpdateMultiSeq_Dlg::CreateControls(), CTrackConfigManager::CreateDisplayName(), CreateDllBuildTree(), CQueueDataBase::CreateDynamicQueue(), DTDParser::CreateEmbeddedName(), XSDParser::CreateEntityId(), CPluginManager< SNetScheduleAPIImpl >::CreateInstance(), CInterfaceRegistry::CreateInterface(), SAppProjectT::CreateNcbiCToolkitLibs(), CPhyloCSFData::CreateSliceForContig(), CHTMLPage::CreateTemplate(), CTrackConfigManager::CreateTrackConfig(), CGeneModelFactory::CreateTracks(), CViewManagerService::CreateViewInstance(), CRR_MetaInfo< TTraits >::CRR_MetaInfo(), CTraversalCodeGenerator::CTraversalCodeGenerator(), CTextPanel::DataLoaded(), CGridCgiContext::DefinePersistentEntry(), CQueueDataBase::DeleteDynamicQueue(), CJobGCRegistry::DeleteIfTimedOut(), CDiagContext::DeleteProperty(), CNcbiResourceInfoFile::DeleteResourceInfo(), SQueueParameters::Diff(), CDisambiguator::Disambiguate(), CEventHandler::Dispatch(), SAsnProjectMultipleT::DoCreate(), SAppProjectT::DoCreate(), SLibProjectT::DoCreate(), SDllProjectT::DoCreate(), SMsvcProjectT::DoCreate(), CSimpleMakeFileContents::DoesValueContain(), DoHighlightMotif(), COpenViewManager::DoTransition(), CColumnValidatorRegistry::DoValidate(), CGffBaseRecord::DropAttributes(), CPSGBlobMap::DropBlob(), CAlignResultsSet::DropQuery(), CQueue::Dump(), CNSAffinityRegistry::Dump(), CNSGroupsRegistry::Dump(), CEditingBtnsPanel::EditButton(), WSDLParser::EmbeddedElement(), CDeleteQueue< const CTSE_ScopeInfo *, CTSE_ScopeInternalLock >::Erase(), CVcfHistogram::EraseCachePerAnnotation(), CDBUDRandomMapper::Exclude(), CTreeFiller::Execute(), CReportNode::Exist(), CMacroEngine::ExistRTVar(), CMacroResolver::ExistRTVar(), CSeqDB_IdListValuesTest::Explore(), CFileModules::ExternalResolve(), CDataTypeModule::ExternalResolve(), CAlignFormatUtil::ExtractSeqAlignForSeqList(), ExtractSupportModels(), CQueue::FailJob(), TAsyncToken::FeatFromMap(), CSoMap::FeatureToSoType(), CAlignCollapser::FilterAlignments(), CGff3AnnotAssembler::FinalizeAnnot(), CGC_Assembly::Find(), CHandleRangeMap::find(), CItemsInfo::Find(), CPSGCache_Base< string, shared_ptr< SPsgBlobInfo > >::Find(), IEditingActionBiosource::Find(), IEditingActionDesc::Find(), CEditingActionDescUserObject::Find(), IEditingActionInst::Find(), CEditingActionDescLocalId::Find(), CEditingActionDescComment::Find(), IEditingActionFeat::Find(), CEditingActionFeatGeneLocusPlain::Find(), CEditingActionFeatGeneLocusRna::Find(), CEditingActionFeatGeneLocusCdsGeneProt::Find(), CAppRegistry::Find(), SAccGuide::Find(), CPriorityTaxNodes::findAncestor(), CTSE_Info::FindBioseq(), CNCBlobStorage::FindBlob(), CCompoundRegistry::FindByName(), CSeqTableInfo::FindColumn(), CMacroPanelLoader::FindControl(), CCriteriaSet::FindCriteria(), CCgiApplication::FindDiagFactory(), IEditingActionFeat::FindFeatForAnotherFeat(), CFeatureMap::FindFeature(), CDomainStorage::FindFieldStringById(), CDomainStorage::FindFieldValueById(), CProjectTreeFolders::FindFolder(), CFeatureMap::FindGeneParent(), CSeq_id_int_Tree::FindInfo(), CSeq_id_Textseq_Tree::FindInfo(), CSeq_id_General_Tree::FindInfo(), CSeq_id_PDB_Tree::FindInfo(), FindInstCodeAndSpecID(), COrgMod::FindInstitutionCode(), CTSE_LockSet::FindLock(), CSeq_id_Textseq_Tree::FindMatch(), CSeq_id_PDB_Tree::FindMatch(), sequpd::FindMatches(), CSeq_id_int_Tree::FindMatchStr(), CSeq_id_Giim_Tree::FindMatchStr(), CSeq_id_PDB_Tree::FindMatchStr(), CFeatureMap::FindMrnaParent(), CEnumeratedTypeValues::FindName(), CPhyloTree::FindNodeById(), CSeq_id_Patent_Tree::FindOrCreate(), CProjectTreeFolders::FindOrCreateFolder(), IEditingActionFeat::FindOrCreateProtFeat(), IEditingActionDesc::FindRelated(), CEditingActionDescUserObject::FindRelated(), IEditingActionFeat::FindRelated(), CEditingActionFeatGeneLocus::FindRelated(), IEditingActionFeat::FindRelatedFeatForAnotherFeat(), IEditingActionFeat::FindRelatedOrCreateProtFeat(), CObjectConverter::FindRelations(), CSeq_id_Textseq_Tree::FindReverseMatch(), CSeq_id_PDB_Tree::FindReverseMatch(), CTableDataBioTreeContainer::FindRow(), CMasterSeqSegments::FindSeg(), CSNPDb_Impl::FindSeq(), CDataSource::FindSeq_feat_Lock(), CFileDBEngine::FindSeqId(), CSNPDb_Impl::FindTrack(), CEnumeratedTypeValues::FindValue(), CDomainStorage::FindValueIdByField(), CObjFingerprint::Fingerprint(), CSubSource::FixIsolationSourceCapitalization(), CGb_qual::FixRecombinationClassValue(), CReadBlastApp::FixStrands(), CSubSource::FixTissueTypeCapitalization(), FtaStrSevToIntSev(), g_GetClientIP(), g_SrvTimeTerm(), CProjBulderApp::GenerateUnixProjects(), CScore_OverlapBoth::Get(), CScore_OrdinalPos::Get(), CPSGBioseqCache::Get(), CCDDBlobCache::Get(), CDeleteQueue< const CTSE_ScopeInfo *, CTSE_ScopeInternalLock >::Get(), CURLFetchCache::Get(), CNcbiEnvironment::Get(), CPSGAnnotCache::Get(), CRepeatLibrary::Get(), CRfamModel::Get(), CSeq_id_Resolver::Get(), CSDB_ConnectionParam::Get(), CScoreVector< Key, Score >::Get(), CPSGMessages::Get(), CAlignmentCollectionScore::Get(), IEditingAction::GetActionCommand(), CJobGCRegistry::GetAffinityID(), CNSClientsRegistry::GetAffinityReset(), CSeqDBAliasFile::GetAliasFileValues(), CAlnStats< _TAlnIdVec >::GetAlignedIds(), CHttpHeaders::GetAllValues(), CLDS2_Database::GetAnnots(), CNCServer::GetAppSetup(), CEUtils_Request::GetArgument(), SAsnProjectT::GetAsnProjectType(), CAssemblyCache::GetAssemblies(), CTSE_Split_Info::GetAssigner(), CGencollSvc::GetAssmAccs(), XSDParser::GetAttribute(), CNCBINode::GetAttribute(), CCgiSession_NetCache::GetAttribute(), CNCBINode::GetAttributeValue(), pythonpp::CExtObject< CCursor >::GetAttrImpl(), CCgiSession_NetCache::GetAttrIStream(), CAssemblyCache::GetBestAssemblyAcc(), CTotalRangeSynonymMapper::GetBestSynonym(), GetBiosampleData(), GetBiosampleStatus(), CAlnVec::GetBioseqHandle(), CSeqMasterIndex::GetBioseqIndex(), CValidator::CCacheImpl::GetBioseqsOfFeatCache(), SRemoteNodeData::GetBlacklistLimit(), CDataSource::GetBlobs(), CCategoryConfig::GetCategory(), CSplign::GetCds(), CBLAST_Dlg_Item::GetChildByLabel(), CSplitDataLoader::GetChunk(), CTSE_Split_Info::GetChunk(), CPSG_Blob_Task::GetChunkSlot(), CBaseClusterer::GetClusterForId(), CWidgetDisplayStyle::GetColor(), CSeqTextConfig::GetColor(), CAlnTableDS::GetColumnName(), CConvertFeatDlg::GetCommand(), CUnculTaxTool::GetCommandFromValuesTable(), CCriteriaSet::GetCriteriaInstance(), CBLASTParams::GetCurrParams(), CNSTClientRegistry::GetDBClientID(), CNSTUserCache::GetDBUserID(), CHistParamsManager::GetDefHistParams(), CDiagErrCodeInfo::GetDescription(), GetDiscrepancyCaseName(), CIgAnnotationInfo::GetDJChainType(), CIgAnnotationInfo::GetDomainChainType(), CIgAnnotationInfo::GetDomainInfo(), CSGDataSourceContext::GetDS(), CProt_ref::GetECNumberReplacement(), CProt_ref::GetECNumberStatus(), XSDParser::GetElementNamespace(), CGridCgiContext::GetEntryValue(), DTDAttribute::GetEnumValueId(), DTDAttribute::GetEnumValueSourceLine(), CAppEnvHolder::GetEnv(), CExtensionPoint::GetExtension(), CExtensionRegistry::GetExtensionPoint(), CExtensionRegistry::GetExtensions(), CProjectItemsTree::GetExternalDepends(), CDllSrcFilesDistr::GetExtraFileLib(), CValidator::CCacheImpl::GetFeatFromCache(), CBioseqIndex::GetFeatIndex(), CGetFeature::GetFeatInfo(), CSeqGraphicConfig::GetFeatParams(), CValidator::CCacheImpl::GetFeatStrKeyToFeats(), CSNPFeatureParams::GetFeatureParams(), CMacroEditorContext::GetFeatureType(), CRR_MetaInfo< TTraits >::GetFieldIndexByName(), CCSRADataLoader_Impl::GetFileInfo(), CSeqDBAtlas::GetFileSizeL(), CSNPDataLoader_Impl::GetFixedFile(), CPdfFontHandler::GetFontName(), CIgAnnotationInfo::GetFrameOffset(), CMatchFeatureTableDlg::GetFtableIDToSeqIDMap(), CSet5PartialTreeItemData::GetFunction(), CSet3PartialTreeItemData::GetFunction(), CSetBothPartialTreeItemData::GetFunction(), CClear5PartialTreeItemData::GetFunction(), CClear3PartialTreeItemData::GetFunction(), CClearBothPartialTreeItemData::GetFunction(), CIgAnnotationInfo::GetFwr4EndOffset(), CGapAnalysis::GetGapLengthSeqIds(), CGapAnalysis::GetGapLengthSummary(), CGapAnalysis::GetGapLengthToNumAppearances(), CGencollSvc::GetGCAssembly(), CTaxon1::GetGCName(), CGeneInfoFileReader::GetGeneInfoForId(), CLocalTaxon::GetGeneticCode(), GetGoTermErrors(), CJobGCRegistry::GetGroupID(), CGuidGenerator::GetGuidUser(), CMacroEditorContext::GetGUIMolinfoValue(), CDllSrcFilesDistr::GetHeaderLib(), CCgiResponse::GetHeaderValue(), CHistParamsManager::GetHistParams(), NWinHook::CHookedFunctions::GetHookedFunction(), CDBInterfacesFileConnParams::GetHost(), CBioTreeFeatureDictionary::GetId(), CNSAffinityRegistry::GetIDByToken(), CFeatureIdGenerator::GetIdFor(), CLocationListCtrl::GetIdFromForm(), CValidator::CCacheImpl::GetIdToBioseq(), PT::CPTIcons::GetImageIndex(), CSelectionEvent::GetIndexed(), CDllSrcFilesDistr::GetInlineLib(), CSeqMapSwitchPoint::GetInsert(), COrgMod::GetInstitutionFullName(), COrgMod::GetInstitutionShortName(), CFeatList::GetItemBySubtype(), CNRCriteria::GetItemForId(), CIgAnnotationInfo::GetJDomain(), CNSGroupsRegistry::GetJobs(), CNSScopeRegistry::GetJobs(), CObjectManagerEngine::GetJobState(), CNSAffinityRegistry::GetJobsWithAffinities(), CNSAffinityRegistry::GetJobsWithAffinity(), CISOJTALookupWithCache::GetJournalAbbr(), CTrackUtils::GetKey(), CTrackConfigManager::GetKnownAnnots(), CFeatGlyph::GetLabel(), CLabelDescriptionCacheImpl::GetLabel(), CMsvcSite::GetLibInfo(), CJobGCRegistry::GetLifetime(), CQueueDataBase::GetLinkedSection(), CEventHandler::GetListeners(), CInfoCache< KeyType, DataType >::GetLoaded(), CGff3LocationMerger::GetLocation(), variation::CVariationUtil::CVariantPropertiesIndex::GetLocationProperties(), GetLocusTag(), CSet5PartialTreeItemData::GetMacroDescription(), CSet3PartialTreeItemData::GetMacroDescription(), CSetBothPartialTreeItemData::GetMacroDescription(), CClear5PartialTreeItemData::GetMacroDescription(), CClear3PartialTreeItemData::GetMacroDescription(), CClearBothPartialTreeItemData::GetMacroDescription(), CMacroLib::GetMacroRep(), GetMapElement(), CFeatTree::GetMappedFeat(), GetMapString(), CAlignMarkHandler::GetMark(), CSeqGraphicPane::GetMarker(), ILayoutTrackFactory::GetMatchedAnnots(), CDataSource::GetMatches(), CClassTypeInfoBase::GetMayContainType(), CSourceModParser::GetModAllowedValuesAsOneString(), CAutoDefSourceGroup::GetModifiersPresentForAny(), CMemorySrcFileMap::GetMods(), CUIToolRegistry::GetMRUToolNames(), CAgpErr::GetMsg(), CBioTreeFeatureDictionary::GetName(), COrgRefCache::GetNameClassName(), CNAUtils::GetNATrackInfo(), CTextFsm< CSeqSearch::CPatternInfo >::CState::GetNextState(), XSDParser::GetNextToken(), ResidueProfiles::GetNumUnqualAfterIndex(), CReverseObjectStore< TKey, TObject >::GetObject(), DTDElement::GetOccurrence(), CLocalTaxon::GetOrgRef(), impl::CDBConnParamsBase::GetParam(), CQueryImpl::GetParameter(), CLocalTaxon::GetParent(), CNCDistributionConf::GetPeerNameOrEmpty(), CNCPeerControl::GetPeerNameOrEmpty(), CGridCgiContext::GetPersistentEntryValue(), CTaxon1::GetPopsetJoin(), CDBInterfacesFileConnParams::GetPort(), CJobGCRegistry::GetPreciseReadVacantTime(), CJobGCRegistry::GetPreciseSubmitTime(), CNSClientsRegistry::GetPreferredAffinities(), CCdDbPriority::GetPriority(), CPriorityTaxNodes::GetPriorityTaxidAndName(), CPriorityTaxNodes::GetPriorityTaxnode(), CReadDispatcher::GetProcessor(), GetProdName(), CCDSTranslationPanel::GetProductId(), CBLASTParams::GetProgramLabel(), CNSTServiceRegistry::GetProlongOnRead(), CNSTServiceRegistry::GetProlongOnRelocate(), CNSTServiceRegistry::GetProlongOnWrite(), CRequestContext::GetProperty(), CDiagContext::GetProperty(), CChoicePointerTypeInfo::GetPtrIndex(), CDoiLookupWithCache::GetPub(), CValidator::CCacheImpl::GetPubdescToInfo(), CEUtilsUpdaterWithCache::GetPubmedEntry(), GetQualifierClass(), CSeqUtils::GetRangeCollection(), CLocalTaxon::GetRank(), TaxTreeData::getRankId(), CGtfLocationRecord::GetRecordType(), CBamHeader::GetRefIndex(), CBAMDataLoader_Impl::GetRefSeqInfo(), CCSRAFileInfo::GetRefSeqInfo(), CBamFileInfo::GetRefSeqInfo(), CUnculTaxTool::GetReply(), CNcbiResourceInfoFile::GetResourceInfo(), CReadBlastApp::GetRNAfeats(), CDBConnectionFactory::GetRuntimeData(), CLocalTaxon::GetScientificName(), CNSClientsRegistry::GetScopes(), CScoreLookup::GetScore(), CHitMatrixDataSource::GetScoreRange(), CVDBGraphDb_Impl::GetSeqInfo(), CVDBGraphDb_Impl::GetSeqInfoAtRow(), CSeq_loc_Mapper_Base::GetSeqType(), CSeq_loc_Mapper_Base::GetSeqTypeById(), CSeq_loc_Mapper_Base::GetSequenceLength(), CTestMapperSeqInfo::GetSequenceLength(), CTestMapperSeqInfo::GetSequenceType(), CDBDefaultServiceMapper::GetServer(), CDBUDRandomMapper::GetServer(), CDBUDPriorityMapper::GetServer(), SNetScheduleAPIImpl::GetServerByNode(), CDBLB_ServiceMapper::GetServerOptions(), CDBUDRandomMapper::GetServerOptions(), CDBUDPriorityMapper::GetServerOptions(), CDBInterfacesFileConnParams::GetServerType(), CWorkbench::GetService(), SNetStorageRPC::GetServiceIfLocator(), CNSTServiceRegistry::GetServiceProperties(), CBamRefSeqInfo::GetShortSeqBlobId(), CViewManagerService::GetSingletonView(), CTSE_Split_Info::GetSkeletonChunk(), CCdDbPriority::GetSourceCode(), CAutoDefModifierCombo::GetSourceDescriptionString(), CDllSrcFilesDistr::GetSourceLib(), CNCDistributionConf::GetSrvIdByIP(), CQueue::GetStatusAndLifetime(), CQueue::GetStatusAndLifetimeAndTouch(), CPtbRegistry::GetString(), CCommentItem::GetStringForRefSeqGenome(), CRowStyleCatalog::GetStyleForRow(), CCategoryConfig::GetSubcategory(), CConfigRegistry::GetSubConfig(), NMacroUtil::GetSVPartFromString(), CGencollIdMapper::GetSynonyms(), CLocalTaxon::GetSynonyms(), CLocalTaxon::GetTaxIdByName(), CTaxNRCriteria::GetTaxIdForId(), CNcbiTestApplication::GetTestUnit(), CMsvcSite::GetThirdPartyLibBin(), CMacroEngine::GetTmpRTVarObject(), CMacroResolver::GetTmpRTVarObject(), CNSAffinityRegistry::GetTokenByID(), CCassConnection::GetTokenRanges(), CDataMiningService::GetToolByName(), CUIToolRegistry::GetToolId(), CUIToolRegistry::GetToolNames(), CGuiObjectInfoClone::GetToolTip(), CTrackConfigManager::GetTrackFactory(), CCgiResponse::GetTrailerValue(), CThreadLocalTransactional::GetTransaction(), CUnicodeToAsciiTranslation::GetTranslation(), CDataSource::GetTSE_LoadLockIfLoaded(), CDataSource::GetTSESetWithBioseqAnnots(), CDataSource::GetTSESetWithOrphanAnnots(), CPSG_Blob_Task::GetTSESlot(), CNSTServiceRegistry::GetTTL(), CStdAnnotTypes::GetTypeAsString(), CLabel::GetTypeIconAlias(), CFeatureMap::GetTypeMapFor(), CStdAnnotTypes::GetTypeNames(), CStdAnnotTypes::GetTypeNamesPair(), CUpdateMultipleSeq_Input::GetUpdateInput(), CRootTextItem::GetUserObject(), CHttpHeaders::GetValue(), CSimpleMakeFileContents::GetValue(), CPageStat::GetValue(), CGridTableSeqIds::GetValue(), CAlnTableDS::GetValueAt(), CEnumeratedTypeValues::GetValueFlags(), CGtfAttributes::GetValues(), CCompareWithBiosample::GetValuesTableFromSeqEntry(), CRegexpTemplateTester::GetVar(), CNSClientsRegistry::GetWaitAffinities(), CWGSDataLoader_Impl::GetWGSFile(), IEditingActionFeat::GoToProtFeature(), CGencollIdMapper::Guess(), CTSE_Info::HasAnnot(), CGridCgiContext::HasCtgTime(), CSimpleMakeFileContents::HasDefinition(), IDBServiceMapper::HasExclusions(), CDBUDRandomMapper::HasExclusions(), CBioTreeFeatureDictionary::HasFeature(), CDomainStorage::HasField(), CLabel::HasHandler(), CSeqTestContext::HasKey(), CLabelDescriptionCacheImpl::HasLabel(), CEventHandler::HasListener(), CReverseObjectStore< TKey, TObject >::HasObject(), CDRefresher::hasOlderVersion(), CReadBlastApp::hasProblems(), CWorkbench::HasService(), CHistParamsManager::HasSettings(), ResidueProfiles::HasUnqualAfterIndex(), CHttpHeaders::HasValue(), CGtfAttributes::HasValue(), CNCBINode::HaveAttribute(), CCgiResponse::HaveHeaderValue(), CCgiResponse::HaveTrailer(), SCommandLineParserImpl::Help(), CScoreLookup::HelpText(), CAlignFormatUtil::HspListToHitMap(), UpdateViewer::ImportStructure(), CSGAlignmentDS::InitAlignQualityScore(), CSGAlignmentDS::InitAlignScoreCache(), CTaxonCache::Initialize(), CNCDistributionConf::InitMirrorConfig(), CGuidGenerator::Insert(), CAlignResultsSet::Insert(), CMultAlign::InsertDashesInBase(), CProjBulderApp::InsertDep(), CHandleRangeMap::IntersectingWithMap(), CGapCache::IsGap(), isGoodIntron(), CAttribTableColumnIdPanel::IsInputValid(), COrgMod::IsInstitutionCodeValid(), CScoreLookup::IsIntegerScore(), pub_report::CSkipPubJournalHook::IsJournalMissing(), CNSTServiceRegistry::IsKnown(), CGapCache::IsKnownGap(), CMsvcSite::IsLibOk(), CInfoCache< KeyType, DataType >::IsLoaded(), CBLASTParams::IsNucDatabase(), CBLASTParams::IsNucInput(), CStdAnnotTypes::IsPredefinedDescrForType(), CPriorityTaxNodes::IsPriorityTaxnode(), IsProducedByDatatool(), CNCBlobAccessor::IsPurged(), CNSClientsRegistry::IsRequestedAffinity(), CRequestContext::IsSetProperty(), CColumnValidatorRegistry::IsSupported(), CHistParamsManager::IsTempSettings(), CSeqUtils::isTopLevel(), CGapCache::IsUnknownGap(), CEnumeratedTypeValues::IsValidName(), CLocalTaxon::IsValidTaxid(), CStdAnnotTypes::IsValidType(), CQueue::JobDelayExpiration(), CQueue::JobDelayReadExpiration(), CMatchFeatureTableDlg::LinearAutomatch(), CmRNACDSLinker::LinkByProduct(), CAgpConverter::LoadChromosomeMap(), CTraceDataProxy::LoadData(), CSGTraceGraphDS::LoadData(), CProjBulderApp::LoadDepGraph(), CLayoutTrack::LoadProfile(), CBamRefSeqInfo::LoadSeqChunk(), CCleanupHugeAsnReader::LoadSeqEntry(), CSmallDNS::LocalBackResolveDNS(), CSmallDNS::LocalResolveDNS(), CFeatureTableReader::MakeGap(), CCleanup::MakeSmallGenomeSet(), CGencollIdMapper::Map(), CHTMLBasicPage::MapTag(), CNSClientsRegistry::MarkAsAdmin(), CAlignMarkHandler::MarkRow(), CAlignMarkHandler::MarkRowSeq(), CSelectionEvent::Match(), CAlignFilter::Match(), IFunctionLog::Merge(), CFeatTableEdit::MergeFeatures(), CPaintSequence::MouseToFeature(), CNSClientsRegistry::MoveJobToBlacklist(), CUIToolRegistry::MRUListExists(), CBLASTParams::NeedsDbGeneticCode(), CBLASTParams::NeedsQueryGeneticCode(), CBLASTParams::NeedsThreshold(), CPrefetchTokenOld_Impl::NextBioseqHandle(), CBlobSplitterImpl::NextChunk(), CGtfIdGenerator::NextId(), CInterfaceRegistry::ObjectHasInterface(), CWordSubstitutionDlg::OnAdd(), CObjectListWidgetSel::OnAddAccessionClick(), CFeatureGraph::OnAJNotification(), ViewerWindowBase::OnFindPattern(), CAgpValidateReader::OnGapOrComponent(), CUpdateMultiSeq_Dlg::OnIdle(), CAlignTabExportPage2::OnIdle(), CMacroFlowEditor::OnLibToScript(), CMacroFlowEditor::OnLibToScriptUpdate(), CSuspectProductRulesEditor::OnListMatches(), CUpdateMultiSeq_Dlg::OnLoadMapClick(), CUpdateMultiSeq_Dlg::OnMapSelectionClick(), CPaintSequence::OnMouseClick(), CAgpValidateReader::OnObjectChange(), CMacroParamsPanel::OnPropertyChanged(), CMacroFlowEditor::OnRecent(), CMinPanelContainer::OnRestoreWindow(), CAgpValidateReader::OnScaffoldEnd(), CMacroFlowEditor::OnTreectrlItemActivated(), CMacroFlowEditor::OnTreectrlItemDrag(), CMacroFlowEditor::OnTreectrlItemDrop(), CClickableSortUniqueCount::OnTreeSelectionChanged(), CUpdateMultiSeq_Dlg::OnUpdateAllSequenceClick(), CBAMDataLoader_Impl::OpenBAMFilesOnce(), CQueueDataBase::OpenQueue(), CRepeatToFeat::operator()(), CSGQueryNodePreprocessor::operator()(), CIdErrorReporter::operator()(), STreeNodeMapper::operator()(), CAlnIdMap< _TAlnVec, TAlnSeqIdExtract >::operator[](), CArgumentList::operator[](), dup_lookup_table::operator[](), CSeqTestContext::operator[](), SCommandLineParserImpl::ParseAndValidate(), CNetStorageObjectLoc::ParseFileTrackSite(), CFastaReader::ParseGapLine(), CVcfVariant::ParseInfoColumns(), STrackSettings::ParseSettings(), CMakefilePatch::PatchTreeMakefiles(), CNCPeerControl::Peer(), CEditingBtnsPanel::PlaceButtons(), CFixForTransSplicing::PopulateListBox(), CChangeStructuredCommentKeyword::PrefixToKeyword(), CQueue::PrintJobDbStat(), CAgpErrEx::PrintMessageCounts(), CCommandArgDescriptions::PrintUsage(), CCommandArgDescriptions::PrintUsageXml(), SH2S_IoCoordinator::Process(), CReadBlastApp::ProcessCDD(), CProjectTreeBuilder::ProcessDir(), XSDParser::ProcessNamedTypes(), Messenger::ProcessRedraws(), CID2SNPProcessor_Impl::ProcessReply(), ProcessSeqEntryAnnot(), CFeaturePropagator::PropagateFeatureList(), CNCBlobAccessor::Purge(), CAlnIdMap< _TAlnVec, TAlnSeqIdExtract >::push_back(), CVariantDescriptors::PushBack(), DTDParser::PushEntityLexer(), CDeleteQueue< const CTSE_ScopeInfo *, CTSE_ScopeInternalLock >::Put(), CReverseObjectStore< TKey, TObject >::PutObject(), CQueue::PutProgressMessage(), CAlignResultsSet::QueryExists(), CQueueDataBase::QueueExists(), CQueueDataBase::QueueInfo(), CBLASTToolManager::QuickLaunch(), CGFFReader::Read(), CSeqDBAliasSets::ReadAliasFile(), CMultiReader::ReadAlignment(), CQueue::ReadAndTouchJob(), CReadBlastApp::ReadBlast(), CNSTServiceRegistry::ReadConfiguration(), CObjectIStreamXml::ReadName(), SQueueParameters::ReadQueue(), CReadBlastApp::ReadRRNA2(), CReadBlastApp::ReadTagMap(), CSeq_entry::ReassignConflictingIds(), FileMessenger::ReceiveCommands(), CNCDistributionConf::ReConfig(), CNCPeriodicSync::ReConfig(), CQueue::RedoJob(), CColumnValidatorRegistry::Register(), CBioTreeFeatureDictionary::Register(), CNSClientsRegistry::RegisterBlacklistedJob(), CAppJobDispatcher::RegisterEngine(), CViewManagerService::RegisterFactory(), CNSClientsRegistry::RegisterJob(), CBlastMasterNode::RegisterNode(), CWorkbench::RegisterService(), CNSClientsRegistry::RegisterSocketWriteError(), CNSTClientRegistry::RegisterSocketWriteError(), CUIToolRegistry::RegisterTemplateTool(), CDataMiningService::RegisterTool(), CUIToolRegistry::RegisterTool(), CNCBlobStorage::ReleaseCacheData(), CObjectManager::ReleaseDataSource(), CReverseObjectStore< TKey, TObject >::ReleaseObject(), CGtfAttributes::Remove(), CCgiSession_NetCache::RemoveAttribute(), CEditingBtnsPanel::RemoveButton(), CGraphCache< TData >::RemoveData(), CScope_Impl::RemoveDataLoader(), CSimpleMakeFileContents::RemoveDefinition(), CAlignDistGraph::RemoveEquivs(), CScope_Impl::RemoveFromHistory(), NWinHook::CHookedFunctions::RemoveHook(), CReadBlastApp::RemoveInterim2(), CNSGroupsRegistry::RemoveJob(), CNSAffinityRegistry::RemoveJobFromAffinity(), CSGDataSourceContext::RemoveNonAsnData(), CReadBlastApp::RemoveProblems(), CWindowManagerService::RemoveToolBarContext(), CThreadLocalTransactional::RemoveTransaction(), CGtfAttributes::RemoveValue(), CSeqGraphicPane::RenameMarker(), CAlignMarkHandler::Render(), SPSGS_AnnotRequest::ReportBlobError(), CReadBlastApp::reportProblems(), SPSGS_AnnotRequest::ReportResultStatus(), CQueue::RereadJob(), CQueue::RescheduleJob(), CBLASTParams::ResetCurrParams(), CSymResolver::Resolve(), CDataTypeModule::Resolve(), CNSAffinityRegistry::ResolveAffinity(), CNSAffinityRegistry::ResolveAffinityToken(), CCodeGenerator::ResolveFileName(), IMacroFunctionContext::ResolveFunctionName(), CNSGroupsRegistry::ResolveGroup(), CSysPath::ResolvePath(), CSoMap::ResolveSoAlias(), CNSGroupsRegistry::RestrictByGroup(), CQueue::ReturnJob(), CFileDBEngine::RollbackTransaction(), CAnnotMetaDataJob::Run(), CProjBulderApp::Run(), CEditingBtnsPanel::RunMacro(), CEditingBtnsPanel::RunMacroWithReport(), s_AddProjItemToDll(), s_CleanupOrgModAndSubSourceOther_helper(), s_CompareOverlapping(), NAdapterSearch::CSimpleUngappedAligner::s_CoordSetToMapIndex(), s_DivvyUpAlignments_ProcessAnnot_Dendiag(), s_DivvyUpAlignments_ProcessAnnot_Denseg(), s_ExpandSubNodes(), s_FindServerSlot(), s_GBSeqStrandedness(), s_GetBestSynonym(), s_GetBucketCache(), s_GetDBFile(), s_GetDBFileNoLock(), s_GetDBFileTry(), s_GetFont(), CMacroMatcherPanelBase::s_GetMatcherPanels(), s_GetMatchingSequence(), s_GetSynHandle(), s_GetTopology(), s_GetUncoveredLength(), CMiscSeqTable::s_GetValueToSehMap(), CFixFeatureId::s_MakeIDPairs(), s_NormalizeSuffix(), s_ReadHeader(), CFixFeatureId::s_ReassignFeatureIds(), s_RemoveAnnot(), s_ReplaceFeatureIdXref(), s_SetDeflineBits(), s_SetDeflineLeafs(), s_SpliceAnnotsForSeqId(), s_StringToFastaFlag(), s_Test_Extremes(), s_Test_Interval(), s_Test_Subset(), s_UpdateFeatureId(), UpdateViewer::SaveAlignments(), CLayoutTrack::SaveProfile(), CEditingBtnsPanel::SaveSettings(), SeqItem::select(), SeqTree::selectByTax(), NSnpGui::SelectClinSigTerm(), CScriptPanel::SelectMacro(), CScriptPanel::SelectMacros(), FileMessenger::SendCommand(), FileMessenger::SendReply(), SeqAnnotMapSeqId(), CCdDbPriority::SeqIdTypeToPriority(), SeqLocMapperToPairwiseAligns(), CNcbiEnvironment::Set(), CSDB_ConnectionParam::Set(), CScoreVector< Key, Score >::Set(), CAlignmentCollectionScore::Set(), CIgBlastTabularInfo::SetAirrFormatData(), CEUtils_Request::SetArgument(), CNSClientsRegistry::SetClientData(), CChain::SetConfirmedEnds(), CNSTClientRegistry::SetDBClientID(), CNSTUserCache::SetDBUserID(), DTDElement::SetDefaultRefsOccurence(), CTSE_ScopeInfo::SetEditTSE(), CQueue::SetJobListener(), CNSClientsRegistry::SetLastScope(), CObjectManager::SetLoaderOptions(), CSeqDB_ColumnEntry::SetMapValue(), CUIToolRegistry::SetMaxMRUSize(), SeqTree::setMembershipColor(), CUIToolRegistry::SetMRUToolNames(), CNSClientsRegistry::SetNodeWaiting(), CQueryImpl::SetNullParameter(), CConversionResultPanel::SetObjects(), CStatement::SetParam(), CQueryImpl::SetParameter(), CwxPhyloEditDlg::SetParams(), CDBUDRandomMapper::SetPreference(), CDBUDPriorityMapper::SetPreference(), CNSClientsRegistry::SetPreferredAffinities(), CSearch< LEGACY, NHITS >::SetResult(), CGffBaseRecord::SetScore(), CDesktopCanvas::SetSelectedObjects(), TaxTreeData::setSelections(), CSeq_loc_Mapper_Base::SetSeqTypeById(), CPageStat::SetValue(), CNSAffinityRegistry::SetWaitClientForAffinities(), CImportError::SeverityStr(), ShowHideManager::ShowAlignedDomains(), ShowHideManager::ShowAlignedOrAnnotatedDomains(), ShowHideManager::ShowDomainsWithHighlights(), CLDS2_Annot_Hook::SkipObject(), CStreamState< T >::slot(), CMSPeak::SmartCull(), CFlatParseReport::sMessageTemplateFor(), CSoMap::SoIdToType(), CSoMap::SoTypeToFeature(), CSoMap::SoTypeToId(), sRunTest(), CThreadPoolEngine::StartJob(), CReadBlastApp::StoreBlast(), CGtfRecord::StrAttributes(), CGvfWriteRecord::StrAttributes(), CGtfRecord::StrStructibutes(), CNSClientsRegistry::SubtractBlacklistedJobs(), CCachedDictionary::SuggestAlternates(), sUpdateCase(), sx_ProcessId(), CHitFilter< THit >::sx_TM(), COrg_ref::TableLookup(), CMacroFunction_UpdateProteinSeqs::TheFunction(), CMacroFunction_LookupPub::TheFunction(), CGuiRegistry::ToConfigFile(), CHandleRangeMap::TotalRangeIntersectingWith(), CNSClientsRegistry::Touch(), CNSTClientRegistry::Touch(), CMemoryFileMap::Unmap(), CNSClientsRegistry::UnregisterJob(), CWorkbench::UnRegisterService(), CNcbiEnvironment::Unset(), CNSClientId::Update(), SRemoteNodeData::UpdateBlacklist(), CProjBulderApp::UpdateDepGraph(), CJobGCRegistry::UpdateLifetime(), CRBSubpanel::UpdateList(), UpdateOrgInformation(), CCdsMatchInfo::UpdateOtherMrnas(), CNSClientsRegistry::UpdatePreferredAffinities(), CNCBlobAccessor::UpdatePurgeData(), CJobGCRegistry::UpdateReadVacantTime(), CHttp2Session::UpdateResponse(), CBLASTParams::UseDustFilter(), CSrcWriter::ValidateFields(), CProjectItemsTree::VerifyDataspecProj(), CProjectItemsTree::VerifyExternalDepends(), SMakeProjectT::VerifyLibDepends(), CGff3LocationMerger::VerifyRecordLocation(), CSeqDBAliasNode::WalkNodes(), CFtableWriteHook::WriteChoiceVariant(), CDescrWriteHook::WriteClassMember(), CSeq_annot_Info::x_AddAlignIndex(), CTSE_Info::x_AddFeaturesById(), CSGAnnotJob::x_AddGraphObject(), CAutoDefModifierCombo::x_AddHIVModifiers(), CAutoDefModifierCombo::x_AddInfluenzaModifiers(), CAppJobDispatcher::x_AddJobRecord(), CFastaReader::x_AddPairwiseAlignments(), CPhrapReader::x_AddRead(), CAutoDefModifierCombo::x_AddRequiredSubSourceModifiers(), CGencollIdMapper::x_AddSeqToMap(), CHistParamsManager::x_AddSettings(), CAutoDefModifierCombo::x_AddTypeStrainModifiers(), CAlnTableDS::x_AdjustColumns(), CQueueDataBase::x_AppendDumpLinkedSections(), CTrackConfigManager::x_AppendKeyDisplayOptions(), CTaxValidationAndCleanup::x_ApplySpecificHostMap(), CCountryConflict::x_ApplyToBioSource(), CCountryFixup::x_ApplyToBioSource(), CLatLonTool::x_ApplyToBioSource(), CConsolidateLikeMods::x_ApplyToBioSource(), CNCMessageHandler::x_AssignCmdParams(), CObjectOStreamXml::x_BeginNamespace(), CObjectConverter::x_BuildGraph(), CTraversalCodeGenerator::x_BuildNameToASNMap(), CLocalTaxon::x_Cache(), CBlobCacher::x_CacheMapRecs(), CAlignDistGraph::x_CalculateAllDistances(), CAlignDistGraph::x_CalculateOneDistance(), CFeatureGraph::x_CancelJob(), CQueue::x_CancelJobs(), CQueue::x_ChangeReadingStatus(), CQueue::x_CheckExecutionTimeout(), CFastaReader::x_CheckForPostponedMods(), CBlobCacher::x_CleanOrphanRecs(), CScope_Impl::x_ClearCacheOnNewData(), CScope_Impl::x_ClearCacheOnRemoveSeqId(), CSVGRenderer::x_ClippingRect(), CFastaReader::x_CloseGap(), CGBDocument::x_CloseProjectItemViews(), CSGAlignStatJob::x_CollectAlignStats(), CDataSource::x_CollectBlob_ids(), CPSGS_Dispatcher::x_ConcludeIDGetNARequestStatus(), CQueueDataBase::x_ConfigureQueueClasses(), CQueueDataBase::x_ConfigureQueues(), CSeq_align_Mapper_Base::x_ConvertSegment(), CSeq_align_Mapper::x_ConvertSegmentCvt(), CPromote::x_CopyCdregionToRNA(), CObjectListWidgetSel::x_CopyUniqueObjects(), CQueueDataBase::x_CountQueuesToAdd(), CSGFeatureJob::x_CreateFeatSmear(), CNSGroupsRegistry::x_CreateGroup(), CTraversalCodeGenerator::x_CreateNode(), CTaxTreeToolJob::x_CreateProjectItems(), CNcbiEncrypt::x_Decrypt(), CNSAffinityRegistry::x_DeleteAffinity(), CQueueDataBase::x_DeleteQueuesAndClasses(), CNSGroupsRegistry::x_DeleteSingleInMemory(), CQueueDataBase::x_DetectChangesInLinkedSection(), CMsvcSite::x_DirExists(), CNCMessageHandler::x_DoCmd_AckAlert(), CNCMessageHandler::x_DoCmd_ReConfig(), CImportFeatTable::x_DoImportCDS(), CQueueDataBase::x_Dump(), CQueue::x_DumpJobs(), CMemoryRegistry::x_Enumerate(), CCompoundRWRegistry::x_Enumerate(), CShowBlastDefline::x_FillDeflineAndId(), CSDB_ConnectionParam::x_FillLowerParams(), CThreadPoolEngine::x_Find(), CMaskedRangeSet::x_FindAndCombine(), CwxAnnotConfigDlg::x_FindAnnot(), CDataSource::x_FindBestTSE(), CTSE_Info::x_FindBioObject(), CDataSource::x_FindBioseq_Info(), CDataSource::x_FindBioseq_set_Info(), CSeqDBAliasSets::x_FindBlastDBPath(), CGencollIdMapper::x_FindChromosomeSequence(), CObjectManager::x_FindDataSource(), CTaxValidationAndCleanup::x_FindHostFixRequest(), CSeq_id_Local_Tree::x_FindIdInfo(), CSeq_id_General_Tree::x_FindInfo(), CSeq_id_Giim_Tree::x_FindInfo(), CSeq_id_Patent_Tree::x_FindInfo(), CFeatTree::x_FindInfo(), CSeq_id_Textseq_Tree::x_FindMatchByAcc(), CDockContainer::x_FindNodeByWindow(), CGencollIdMapper::x_FindParentSequence(), CQualLookupMap::x_FindRequest(), CSeq_id_Textseq_Tree::x_FindRevMatchByAccPacked(), CPhrapReader::x_FindSeq(), CDataSource::x_FindSeq_annot_Info(), CDataSource::x_FindSeq_entry_Info(), CPhyTreeFormatter::x_FindSeqType(), CDataSource::x_FindTSE_Info(), CGencollIdMapper::x_FixImperfectId(), CSeq_loc_Mapper_Base::x_ForceSeqTypes(), CGuiObjectInfoClone::x_FormatAccessionLinks(), CAnnot_Collector::x_FoundAllNamedAnnotAccessions(), CAlignFilter::x_FuncCall(), CAlignedFeatureGraph::x_GatherCluster(), CMemoryRegistry::x_Get(), CCompoundRWRegistry::x_Get(), CWindowManager::x_GetActiveClientByWindow(), CNAUtils::x_GetAllGIs(), CTableDataAlnSummary::x_GetAlnSummary(), CSeqDBVol::x_GetAmbigSeq(), CTSE_Info::x_GetBioseq(), CTSE_Info::x_GetBioseq_set(), CId2ReaderBase::x_GetBlobState(), CVcfGlyph::x_GetClinVarToolTip(), CMemoryRegistry::x_GetComment(), CSatInfoSchema::x_GetConnectionByConnectionPoint(), CSatInfoSchema::x_GetConnectionByService(), CTMgr_AnnotCounts::x_GetCount(), impl::CDriverContext::x_GetCounts(), CId2Reader::x_GetCurrentConnection(), CPubseq2Reader::x_GetCurrentResult(), CSeqGraphicPane::x_GetDefaultMarker(), CGff2Reader::x_GetFeatureById(), CVDBGraphDataLoader_Impl::x_GetFileInfo(), CLocAndGCodePanel::x_GetGeneticCode(), CSeqGraphicPane::x_GetGlyphByTipId(), CTSE_Info::x_GetIdObjects(), CFeatTree::x_GetInfo(), CTaxonCache::x_GetItem(), CDiagConsoleCache::x_GetItem(), CAppJobDispatcher::x_GetJobRecord(), CObjectManager::x_GetLoaderByName(), CMemoryFileMap::x_GetMemoryFileSegment(), CLocAndGCodePanel::x_GetMitochondrialCode(), CNAUtils::x_GetNAId(), CNAUtils::x_GetNAMetaData(), CMergeTree::x_GetNode(), CGeneFileWriter::x_GetNumPubMedLinksForGeneId(), CGeneFileWriter::x_GetOffsetForGeneId(), CGapAnalysis::x_GetOrCreateHistogramBinner(), CAlignGroup::x_GetOrgRef(), CRequestContext::x_GetPassThroughProp(), CSDB_ConnectionParam::x_GetPassword(), CLocAndGCodePanel::x_GetPlastidCode(), CSeq_loc_Mapper_Base::x_GetPrimaryId(), CAlignedFeatureGraph::x_GetRecsSortedByLength(), CAppJobDispatcher::x_GetRegisteredEngine(), CGuiRegistry::x_GetRegistryRef(), CUnculturedTool::x_GetReply(), CQueue::x_GetRunningJobsPerClientIP(), CCompartApp::x_GetSeqLength(), CAlnVec::x_GetSeqVector(), CTSE_Info::x_GetSNP_Info(), CUIToolRegistry::x_GetToolRecByName(), CLDS2_Manager::x_GetUrlHandler(), CLDS2_DataLoader::x_GetUrlHandler(), CDataTypeModule::x_GetVar(), CSeqGraphicPane::x_HasDefaultMarker(), CMemoryRegistry::x_HasEntry(), CCompoundRWRegistry::x_HasEntry(), CMultiReader::x_HasExactMatch(), CTSE_Info::x_HasFeaturesWithId(), CAlignMarkHandler::x_HitRangeBorder(), CAlnMixSequences::x_IdentifyAlnMixSeq(), CCommandArgDescriptions::x_IdentifyCommand(), CNSAlerts::x_IdToType(), CNSTAlerts::x_IdToType(), CAlignMarkHandler::x_InitDeltaMap(), CDBLB_ServiceMapper::x_IsEmpty(), CGencollIdMapper::x_IsExactIdInAssembly(), CGencollIdMapper::x_IsLoc_Int_InAGap(), CRequestContext::x_IsSetPassThroughProp(), CBlastAppArgs::x_IssueWarningsForIgnoredOptions(), CSVGRenderer::x_LinearGradient(), CMetaRegistry::x_Load(), CAppHitFilter::x_LoadConstraints(), CAppHitFilter::x_LoadIDs(), CSplign::x_LoadSequence(), CVarTrack::x_LoadSettings(), CVcfTrack::x_LoadSettings(), CHTMLPage::x_LoadTemplateLib(), CMacroEngine::x_LocateRTVar(), CMacroResolver::x_LocateRTVar(), CMacroQueryExec::x_LocateRTVar(), BlastdbCopyApplication::x_MakeDBwIDList(), CUpdateMultipleSeq_Input::x_MatchIdsAndAddUpdateToScope(), CAlnMixMerger::x_Merge(), CGff2Reader::x_MergeAlignments(), CAlnMixSegments::x_MinimizeGaps(), CSeqGraphicPane::x_ModifyMarker(), CAlignedFeatureGraph::x_mRNA_CDS_ToBePlaced(), CGeneModelTrack::x_NeedHighlight(), CObjectConverter::x_NormalizeTypeName(), CAppTaskService::x_OnTaskCanceled(), CAppTaskService::x_OnWakeUpSignal(), CQueueDataBase::x_Open(), CAlignedFeatureGraph::x_PlaceCluster(), CSVGRenderer::x_PolygonStippleToPattern(), CMacroEditingActionPanel::x_PopulateTreeCtrl(), CArgDescriptions::x_PostCheck(), CNSScopeRegistry::x_PrintSelected(), CAgpValidateReader::x_PrintTotals(), CGff2Reader::x_ProcessAlignmentScores(), CId2ReaderBase::x_ProcessGetSplitInfo(), CGeneModelFeatJob::x_ProcessLandMarkFeatures(), CCleanupHugeAsnReader::x_PruneAndReorderTopIds(), CCleanupHugeAsnReader::x_PruneIfFeatsIncomplete(), CCleanupHugeAsnReader::x_PruneIfSegsMissing(), CQueueDataBase::x_ReadLinkedSections(), CSeqDBColumn::x_ReadMetaData(), CUIToolRegistry::x_ReadToolInfo(), CDBUDRandomMapper::x_RecalculatePreferences(), CCleanupHugeAsnReader::x_RecordFeatureId(), CTSE_Info::x_RegisterBioObject(), CObjectManager::x_RegisterLoader(), CTrackContainer::x_ReinitNATrack(), CGFFReader::x_RemapGeneRefs(), CNSAffinityRegistry::x_RemoveClientFromAffinities(), CAppJobDispatcher::x_RemoveJobRecord(), CSeqGraphicPane::x_RemoveMarker(), CStringConstraintPanel::x_ReplaceChoices(), CTSE_Info::x_ResetBioseq_setId(), CTSE_Info::x_ResetBioseqId(), CQueue::x_ResetDueTo(), CRequestContext::x_ResetPassThroughProp(), CMacroEngine::x_ResolveFunctionName(), CTreeQueryExec::x_ResolveFunctionName(), CQueueDataBase::x_RestorePauseState(), CQueueDataBase::x_RestoreRefuseSubmitState(), CObjectManager::x_RevokeDataLoader(), CMacroInterpreter::x_RmvGeneXrefValidateArgs(), CAssemblyCache::x_Run(), CAlnMixMerger::x_SecondRowFits(), CTaxIdSet::x_SelectBestTaxid(), CBLASTToolManager::x_SelectCompatibleInputObjects(), CMemoryRegistry::x_Set(), CCompoundRWRegistry::x_Set(), CAgpConverter::x_SetChromosomeNameInSourceSubtype(), CMemoryRegistry::x_SetComment(), CFeatureGenerator::SImplementation::x_SetComment(), CPubseq2Reader::x_SetCurrentResult(), CGapsEditor::x_SetGapParameters(), CLocAndGCodePanel::x_SetGeneticCode(), CTSE_Info::x_SetIdObjects(), CLocAndGCodePanel::x_SetMitochondrialCode(), CQueryImpl::x_SetOutParameter(), CLocAndGCodePanel::x_SetPlastidCode(), CMappingObjectLoader::x_ShowMappingDlg(), x_SingleRange(), CUpdateMultiSeq_Dlg::x_SkipSelected(), x_SubAndSort(), x_SubNoSort(), CAlignedFeatureGraph::x_TryPlaceCDSFeature(), DTDParser::x_Type(), CSeq_id_General_Tree::x_Unindex(), CSeq_id_Giim_Tree::x_Unindex(), CSeq_id_Patent_Tree::x_Unindex(), CSeq_id_PDB_Tree::x_Unindex(), CDataSource::x_UnindexSplitInfo(), CDataSource::x_UnindexTSE(), CDataSource::x_Unmap(), CTSE_Info::x_UnmapAnnotObject(), CTSE_Info::x_UnregisterBioObject(), CMemoryRegistry::x_Unset(), CUpdateMultiSeq_Dlg::x_UpdateAlignmentPanel(), CQueue::x_UpdateDB_ProvideJobNoLock(), CQueue::x_UpdateDB_PutResultNoLock(), CCDSTranslationPanel::x_UpdateForceNear(), CAlignMarkHandler::x_UpdateMarks(), CHitMatrixDataSource::x_UpdateScoreMap(), CUpdateMultiSeq_Dlg::x_UpdateSelected(), CQueueDataBase::x_ValidateConfiguration(), CAgpValidateApplication::x_ValidateFile(), CQueue::x_ValidateMaxJobsPerClientIP(), CAgpConverter::x_VerifyComponents(), CObjectOStreamXml::x_WriteClassNamespace(), CGff3Reader::xAddPendingExon(), CReaderBase::xAddStringFlagsWithMap(), CGvfReadRecord::xAssignAttributesFromGff(), CGff3FlybaseWriter::xAssignDefline(), CGtfWriter::xAssignFeatureAttributeGeneId(), CGff3Writer::xAssignFeatureAttributeParentCds(), CGff3Writer::xAssignFeatureAttributeParentGene(), CGff3Writer::xAssignFeatureAttributeParentMrna(), CGff3Writer::xAssignFeatureAttributeParentpreRNA(), CGff3Writer::xAssignFeatureAttributeParentRegion(), CGff3Writer::xAssignFeatureAttributeParentVDJsegmentCregion(), CGtfWriter::xAssignFeatureAttributeTranscriptId(), CGff3FlybaseWriter::xAssignTaxid(), CVcfReader::xAssignVariantProps(), CVcfReader::xAssignVariantSource(), CGtfReader::xCheckForGeneIdConflict(), CGtfReader::xCreateParentGene(), CGtfReader::xCreateParentMrna(), CSoMap::xFeatureMakeImp(), CSoMap::xFeatureMakeMiscFeature(), CSoMap::xFeatureMakeMiscRecomb(), CSoMap::xFeatureMakeNcRna(), CSoMap::xFeatureMakeProt(), CSoMap::xFeatureMakeRegulatory(), CSoMap::xFeatureMakeRepeatRegion(), CSoMap::xFeatureMakeRna(), CGtfAnnotAssembler::xFeatureSetFeatId(), CGff3Reader::xFeatureSetXrefGrandParent(), CGff3Reader::xFeatureSetXrefParent(), CGtfReader::xFindFeatById(), CGff3Reader::xFindFeatureUnderConstruction(), CSrcWriter::xFormatTabDelimited(), CGtfWriter::xGenericGeneId(), CFeatureMap::xGetCookedFeatureType(), CGff3Reader::xGetPendingExons(), CGff3Reader::xInitializeFeature(), CSoMap::xMapBond(), CSoMap::xMapGeneric(), CSoMap::xMapMiscFeature(), CSoMap::xMapMiscRecomb(), CSoMap::xMapNcRna(), CSoMap::xMapRegulatory(), CSoMap::xMapRepeatRegion(), CSoMap::xMapRna(), CGff2Record::xMigrateAttributes(), CFeatTableEdit::xNextProteinId(), CFeatTableEdit::xNextTranscriptId(), CGff3Reader::xPostProcessAnnot(), CGtfReader::xPostProcessAnnot(), CSrcWriter::xPrepareTableColumn(), CSrcWriter::xProcessFieldNames(), CFeatTableEdit::xRenameFeatureId(), CGff3Reader::xUpdateAnnotCds(), CGff3Reader::xUpdateAnnotExon(), CGff3Reader::xUpdateAnnotGeneric(), CGtfReader::xUpdateAnnotParent(), CGvfReader::xVariationSetProperties(), CGff3Reader::xVerifyCdsParents(), CGff3Reader::xVerifyExonLocation(), CGff3Writer::xWriteFeatureProtein(), CGtfWriter::xWriteRecordsCds(), CWiggleWriter::xWriteTableBedStyle(), CEventHandler::~CEventHandler(), and FileMessenger::~FileMessenger().
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Definition at line 165 of file map.hpp.
Referenced by CObjectManager::AcquireSharedBioseq(), CObjectManager::AcquireSharedSeq_annot(), CObjectManager::AcquireSharedSeq_entry(), CPdfDictionary::Add(), SChunkInfo::Add(), CDBUDPriorityMapper::Add(), CPSGCache_Base< string, shared_ptr< SPsgBlobInfo > >::Add(), SCommon8Bytes::Add(), CRangeUnion< CBGZFPos >::add_range(), CAlignDistGraph::AddAlignment(), CLDS2_ObjectParser::AddAnnot(), CBLAST_Dlg_Item::AddChild(), SeqTreeAsnizer::addChildNode(), CSuspectCompoundConstraintPanel::AddConstraint(), CCompoundConstraintPanel::AddConstraint(), CMappingRanges::AddConversion(), RowSourceTable::addEntry(), CDomainStorage::AddField(), CSNPDataLoader_Impl::AddFixedFileOnce(), CFileCode::AddForwardDeclaration(), CGapAnalysis::AddGap(), CDRefresher::addSequence(), CMakeProject::AddSourceFile(), CExplicit_Mapper_Sequence_Info::AddSynonym(), CNcbiTestApplication::AddTestDependsOn(), CDataSource::AddTSE(), CGtfAttributes::AddValue(), CSimpleDictionary::AddWord(), CTaxNRCriteria::Apply(), CAddFluComments::Apply(), CDataSource_ScopeInfo::AttachTSE(), BOOST_AUTO_TEST_CASE(), WSDLParser::BuildDataTree(), CAlignFormatUtil::BuildFormatQueryString(), TaxTreeData::cacheRank(), CAlignDistGraph::CAlignDistGraph(), CAlnStats< _TAlnIdVec >::CAlnStats(), CBLASTParams::CBLASTParams(), CCSraDb_Impl::CCSraDb_Impl(), CGff2Record::CGff2Record(), CGffBaseRecord::CGffBaseRecord(), CDataTypeModule::CheckNames(), CHistogramGlyph::CHistogramGlyph(), CDataLoader::ChoiceToDetails(), CClassTypeInfoBase::ClassesById(), CMacroEditorContext::CMacroEditorContext(), CRegExFSA::Collect(), CProjBulderApp::CollectDep(), CEntropyCalculator::ComputeSlidingWindowEntropy(), CPepXML::ConvertFromOMSSA(), CPepXML::ConvertModifications(), CPepXML::ConvertModSetting(), CRunningJobLimit::CountJob(), SChunkAnnots::Create(), CProjectTreeFolders::CreateFolder(), CLadderContainer::CreateLadderArrays(), CBinsTrackFactory::CreateTracks(), CHapmapTrackFactory::CreateTracks(), CLDBlockTrackFactory::CreateTracks(), CAggregateFeatureTrackFactory::CreateTracks(), CVarTrackFactory::CreateTracks(), CEpigenomicsTrackFactory::CreateTracks(), CFeatureTrackFactory::CreateTracks(), CGraphTrackFactory::CreateTracks(), CSeqTableGraphTrackFactory::CreateTracks(), CSequenceTrackFactory::CreateTracks(), CAlignmentTrackFactory::CreateTracks(), CGeneModelFactory::CreateTracks(), CVcfTrackFactory::CreateTracks(), CTaxNRCriteria::CTaxNRCriteria(), CVDBGraphDb_Impl::CVDBGraphDb_Impl(), CWGSDataLoader_Impl::CWGSDataLoader_Impl(), IDBServiceMapper::Exclude(), CPriorityTaxNodes::findAncestor(), CSeq_id_int_Tree::FindOrCreate(), CSeq_id_Textseq_Tree::FindOrCreate(), CSeq_id_General_Tree::FindOrCreate(), SNetServerPoolImpl::FindOrCreateServerImpl(), SAccGuide::SHints::FindSubMap(), CScore_OrdinalPos::Get(), CLoadInfoMap< Key, Info >::Get(), CCacheWithLock< Key, Value, Less >::get_lock(), CBinaryRangeCacheWithLock< Position, Value >::get_lock(), SBamIndexRefIndex::GetAlnOverStarts(), CAlignDistGraph::GetAndRemoveNearestPair(), CSGSegmentSmearJob::GetAnnotNames(), CEpigenomicsDS::GetAnnotNames(), CTSE_ScopeInfo::GetBioseqLock(), CValidator::CCacheImpl::GetBioseqsOfFeatCache(), CDataSource::GetBlobs(), CDataSource_ScopeInfo::GetBlobs(), CPSGDataLoader_Impl::GetBlobsOnce(), CEnumeratedTypeValues::GetDisplayName(), CGetFeature::GetFeatInfo(), CUser_field::GetFieldsMap(), CMatchFeatureTableDlg::GetFtableIDToSeqIDMap(), CTaxon1::GetGCName(), CGeneInfoFileReader::GetGeneInfoForId(), CItemsInfo::GetItemsByName(), CItemsInfo::GetItemsByOffset(), CMsvcSite::GetLibInfo(), CSnpTrackFactory::GetMatchedAnnots(), CVcfTrackFactory::GetMatchedAnnots(), ILayoutTrackFactory::GetMatchedAnnots(), CClassTypeInfoBase::GetMayContainType(), CTaxon1::GetPopsetJoin(), CWGSDb_Impl::GetProtAccRanges(), CDBConnectionFactory::GetRuntimeData(), SNetServiceMap::GetServiceByNameImpl(), SNetStorageRPC::GetServiceIfLocator(), CAutoDefModifierCombo::GetSourceDescriptionString(), CCassConnection::GetTokenRanges(), CAlignFormatUtil::HspListToHitMap(), CAlignCollapser::InitContig(), CViewGraphic::InitView(), CScoreVector< Key, Score >::insert(), CMultAlign::InsertDashesInReads(), TaxTreeData::insertLineage(), InsertMapElement(), CMsvcPrjProjectContext::IsConfigEnabled(), CProjBulderApp::LoadDepGraph(), main(), value_slice::CMakeObject< SRunTimeCP, map< K, V >, CDB_Result >::Make(), value_slice::CMakeObject< SSafeCP, map< K, V >, CDB_Result >::Make(), CGtfRecord::MakeChildRecord(), CAlignMarkHandler::MarkRow(), CAlignMarkHandler::MarkRowSeq(), CEnumeratedTypeValues::NameToValue(), neighbor_query(), CAlignCompare::NextGroup(), CPhyloTreeWidget::OnExportSelection(), CAgpValidateReader::OnGapOrComponent(), CBioTreeFeatureDictionary::operator=(), SeqTree::prepare(), COMSSABase::PrintMods(), CBlastMasterNode::Processing(), CAlnIdMap< _TAlnVec, TAlnSeqIdExtract >::push_back(), CDeleteQueue< const CTSE_ScopeInfo *, CTSE_ScopeInternalLock >::Put(), CPriorityTaxNodes::putIntoMap(), CReverseObjectStore< TKey, TObject >::PutObject(), CRepeatLibrary::Read(), CNCPeriodicSync::ReConfig(), CBioTreeFeatureDictionary::Register(), CJobGCRegistry::RegisterJob(), CWriteObjectList::RegisterObject(), CAlignDistGraph::RemoveEquivs(), CSeqGraphicPane::RenameMarker(), CVectorScreen::Run(), CDemoApp::Run(), s_GetBlobs(), s_GetGeneWeight(), s_Match_id(), s_ParseSubNodes(), s_ReadIdsFromFile(), SeqAnnotMapSeqId(), CTSE_ScopeInfo::SetEditTSE(), CRR_MetaInfo< TTraits >::SetFieldName(), CFastaReader::SetGapLinkageEvidence(), CGlyphContainer::SetHighlights(), CQueryImpl::SetNullParameter(), CStatement::SetParam(), CQueryImpl::SetParameter(), CChoicePointerTypeInfo::SetPointerType(), CAlnMixSegment::SetStartIterator(), CStreamState< T >::slot(), CGtfRecord::StrAttributes(), CGtfRecord::StrStructibutes(), sx_AddId(), CMatchFeatureTableDlg::TransferDataToWindow(), CProjBulderApp::UpdateDepGraph(), CScore_OverlapBoth::UpdateState(), CAsnSubCacheCreateApplication::WriteBlobsInSubCache(), CTSE_Chunk_Info::x_AddAnnotType(), CTSE_Chunk_Info::x_AddFeat_ids(), CCSraAlignIterator::x_AddField(), CSGAnnotJob::x_AddGraphObject(), CAutoDefModifierCombo::x_AddHIVModifiers(), CAutoDefModifierCombo::x_AddInfluenzaModifiers(), CSeqGraphicPane::x_AddNewMarker(), CAutoDefModifierCombo::x_AddRequiredSubSourceModifiers(), CBamRefSeqInfo::x_AddSeqChunk(), CGencollIdMapper::x_AddSeqToMap(), SAccGuide::x_AddSpecial(), CAnnot_Collector::x_AddTSE(), CAutoDefModifierCombo::x_AddTypeStrainModifiers(), CTSE_Chunk_Info::x_AddXref_ids(), CQueueDataBase::x_AppendDumpLinkedSections(), CLocalTaxon::x_Cache(), CBlobCacher::x_CacheMetaRec(), CNewCleanup_imp::x_CleanupOrgModAndSubSourceOther(), CPhyTreeNodeAnalyzer::x_CombineNodeMaps(), CMatchesListCtrl::x_ConvertSelectedToBySeqid(), CSGFeatureJob::x_CreateFeatSmear(), CTraversalCodeGenerator::x_CreateNode(), CUpdateMultipleSeq_Input::x_CreateUpdateSeqInput(), CUpdateMultipleSeq_Input::x_CreateUpdateSeqInputForUnitTest(), CRemoteAppRequest::x_Deserialize(), CMsvcSite::x_DirExists(), CDisplaySeqalign::x_DisplayAlignSortInfo(), CShowBlastDefline::x_DisplayDeflineTable(), CShowBlastDefline::x_DisplayDeflineTableBody(), CEpigenomicsJob::x_Execute(), CAsnSubCacheCreateApplication::x_FetchMissingBlobs(), CVectorTrimPanel::x_FindCompleteDeletions(), CGeneFileWriter::x_Gene2Accn_LineToRecord(), CGeneFileWriter::x_Gene2PM_ProcessFile(), CGeneFileWriter::x_GeneInfo_LineToRecord(), CTMgr_AnnotCounts::x_GetCount(), CSeqGraphicPane::x_GetDefaultMarker(), CGapAnalysis::x_GetOrCreateHistogramBinner(), CTSE_ScopeInfo::x_GetScopeLock(), CScope_Impl::x_GetSeq_id_Info(), CAlignGroup::x_GetTaxId(), CDataTypeModule::x_GetVar(), CAlnStats< _TAlnIdVec >::x_IdentifyPotentialAnchors(), CTSE_Info::x_IndexAnnotTSE(), CDataSource::x_IndexSplitInfo(), CDataSource::x_IndexTSE(), CScoreLookup::x_Init(), CTaxFormat::x_InitBlastDBTaxInfo(), CSeqTableInfo::x_Initialize(), CPhyTreeNodeAnalyzer::x_InitLeafNodeStack(), CUpwardTreeFiller::x_InitTreeTaxInfo(), CRequestContext::x_LoadEnvContextProperties(), CAlignmentCollectionScore::x_LoadNamedScores(), CTaxFormat::x_LoadTaxTree(), CDataSource::x_Map(), CUpdateMultipleSeq_Input::x_MatchIdsAndAddUpdateToScope(), CSeqGraphicPane::x_ModifyMarker(), CGFFReader::x_ParseFeatRecord(), CArgDescriptions::x_PostCheck(), CAgpFastaComparator::x_Process(), CObjectManager::x_RegisterLoader(), CTrackContainer::x_ReinitNATrack(), CTSE_Info::x_ResetBioseq_setId(), CTSE_Info::x_ResetBioseqId(), CGFFReader::x_ResolveID(), CTSE_ScopeInfo::x_RestoreAdded(), CModHandler::x_SaveMods(), CBLASTToolManager::x_SelectCompatibleInputObjects(), CMemoryRegistry::x_Set(), CTSE_Info::x_SetAnnotObjs(), CTSE_Info::x_SetBioseq_setId(), CTSE_Info::x_SetBioseqId(), CTSE_Info::x_SetBioseqIds(), CMemoryRegistry::x_SetComment(), CBlastTabularInfo::x_SetFieldsToShow(), CTSE_Info::x_SetIdObjects(), CQueryImpl::x_SetOutParameter(), CTSE_Split_Info::x_TSEAttach(), and CAlignMarkHandler::x_UpdateMarks().
◆ insert() [2/2]
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◆ lower_bound() [1/2]
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◆ lower_bound() [2/2]
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Definition at line 154 of file map.hpp.
Referenced by CPSGCache_Base< string, shared_ptr< SPsgBlobInfo > >::Add(), CAlnStats< _TAlnIdVec >::CAlnStats(), CHttpCookie_CI::CHttpCookie_CI(), CAlignCollapser::CleanSelfTranscript(), CNcbiEnvironment::Enumerate(), CAlignCollapser::FillGapsInAlignmentAndAddToGenomicGaps(), SAccGuide::Find(), CSeq_id_Textseq_Tree::FindMatch(), CSeq_id_Textseq_Tree::FindOrCreate(), CSeq_id_General_Tree::FindOrCreate(), SAccGuide::SHints::FindSubMap(), CCacheWithLock< Key, Value, Less >::get_lock(), CTSE_ScopeInfo::GetBioseqLock(), CAlignCollapser::GetCollapsedAlgnments(), CPhrap_Seq::GetPaddedPos(), CWGSDb_Impl::GetProtAccRanges(), IDBServiceMapper::GetServerOptions(), CPhrap_Seq::GetUnpaddedPos(), CGnomonAnnotator_Base::MapOneModelToOrigContig(), CFeatureTableReader::MoveRegionsToProteins(), CCommandArgDescriptions::PrintUsage(), s_HasPrefixMatch(), sx_FindBestId(), CCgiResponse::WriteHeader(), CCSraAlignIterator::x_AddField(), CAnnot_Collector::x_AddTSE(), CBlobCacher::x_CacheMetaRec(), CHttpCookies::x_Find(), CSeq_id_Textseq_Tree::x_FindMatchByAcc(), CScope_Impl::x_FindSeq_id_Info(), CTSE_Info::x_GetAnnotObjs(), CCleanupHugeAsnReader::x_GetFluLabel(), CSimpleDictionary::x_GetMetaphoneKeys(), CTSE_ScopeInfo::x_GetScopeLock(), CScope_Impl::x_GetSeq_id_Info(), CAlnStats< _TAlnIdVec >::x_IdentifyPotentialAnchors(), CTSE_Info::x_IndexAnnotTSE(), CDataSource::x_IndexTSE(), CAlnMixMerger::x_Merge(), CTSE_Info::x_ResetBioseq_setId(), CTSE_Info::x_ResetBioseqId(), CAlnMixMerger::x_SecondRowFits(), CTSE_Info::x_SetAnnotObjs(), CDBPoolBalancer::x_TryPool(), CTSE_Info::x_UnindexAnnotTSE(), and CSNPDb_Impl::x_Update().
◆ operator<()
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◆ operator=()
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◆ operator==()
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◆ operator[]()
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◆ RLock()
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◆ RUnlock()
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◆ size()
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Definition at line 148 of file map.hpp.
Referenced by CCriteriaSet::AddCriteria(), CFeatTree::AddFeature(), CTrackContainer::AddTracks(), AppendChildrenToTree(), CAddFluComments::Apply(), CAddCitSubForUpdate::ApplyToCSeq_entry(), CRemoveDuplicateStructuredComment::ApplyToUserObject(), CCassPrm::Assign(), BOOST_AUTO_TEST_CASE(), CSeqAnnotFromFasta::BuildMasterSlaveSeqAlign(), CProjectTreeBuilder::BuildProjectTree(), ResidueProfiles::calculateRowWeights(), CNSAffinityRegistry::CanAccept(), CNSGroupsRegistry::CanAccept(), CNSScopeRegistry::CanAccept(), CWNJobWatcher::CheckForInfiniteLoop(), CPhyloTreeDataSource::Clusterize(), CReadBlastApp::CollectFrameshiftedSeqs(), CReadBlastApp::CollectRNAFeatures(), CFileDBEngine::CommitTransaction(), SeqTree::compareSequenceCompositions(), CQueueDataBase::Configure(), CDeleteQueue< const CTSE_ScopeInfo *, CTSE_ScopeInternalLock >::Contains(), COperationTiming::COperationTiming(), CSUCBlock::CountLines(), CNCDistributionConf::CountServersForSlot(), CPSGSCounters::CPSGSCounters(), CQueueDataBase::CreateDynamicQueue(), AlignmentSet::CreateFromMultiple(), CPhrap_Seq::CreatePadsFeat(), CTaxTreeDS_ObjMgr::CTaxTreeDS_ObjMgr(), CVariantDescriptors::CVariantDescriptors(), CSeq_id_int_Tree::Dump(), CSeq_id_Textseq_Tree::Dump(), CSeq_id_Local_Tree::Dump(), CSeq_id_General_Tree::Dump(), CDeleteQueue< const CTSE_ScopeInfo *, CTSE_ScopeInternalLock >::Erase(), CAlignCollapser::FilterAlignments(), CVecscreenRun::CFormatter::FormatResults(), CScore_OrdinalPos::Get(), CLoadInfoMap< Key, Info >::Get(), CDeleteQueue< const CTSE_ScopeInfo *, CTSE_ScopeInternalLock >::Get(), SeqItem::getAllInstances(), CAlignDistGraph::GetAndRemoveNearestPair(), GetAvailableCriteria(), CAppTaskService::GetBackgroundedTasks(), CRemoteBlastDbDataLoader::GetBlobs(), CPhyloTreeDataSource::GetColsCount(), CCriteriaSet::GetCriteriaCount(), CDataMiningService::GetDefaultToolName(), CFeatIdRemapper::GetFeatIdsCount(), CWNJobWatcher::GetJobsRunningNumber(), CAlignDistGraph::GetLastAlignEquivs(), CReadBlastApp::GetLocMap(), CHistogramGlyph::GetMapNum(), CNCBlobStorage::GetNDBFiles(), CAlnTableDS::GetNumColumns(), CPhyTreeLabelTracker::GetNumLabels(), CBlastMasterNode::GetNumNodes(), SeqTree::getOrdersInTree(), CSNPDataLoader_Impl::GetOrphanAnnotRecordsOnce(), CVDBGraphDataLoader_Impl::GetOrphanAnnotRecordsOnce(), CNCBlobAccessor::GetPurgeCount(), CQualLookupMap::GetRequestList(), CConversionResultPanel::GetSelectedIndices(), CConversionResultPanel::GetSelection(), CSeqsRange::GetSingleId(), CScoreVector< Key, Score >::GetSize(), CCassConnection::GetTokenRanges(), CUIToolRegistry::GetToolNames(), CReadBlastApp::hasProblems(), CCdDbPriority::Initialize(), CNCDistributionConf::InitMirrorConfig(), COrgRefCache::InitNameClasses(), CMultAlign::InsertDashesInReads(), CHandleRangeMap::IntersectingWithMap(), CBlastMasterNode::IsActive(), TaxTreeData::isEmpty(), CBlastMasterNode::IsFull(), CTaxFormat::isTaxidInAlign(), CPriorityTaxNodes::Load(), CReportNode::Merge(), CBlobSplitterImpl::NextChunk(), CObjectListWidgetSel::OnAddAccessionClick(), CEditingBtnsPanel::OnAddMacroClick(), CMacroFlowEditor::OnAppendClick(), CHitMatrixWidget::OnColorByScore(), CMacroFlowEditor::OnDeleteFromLibrary(), CMacroFlowEditor::OnDuplicateClick(), CMacroFlowEditor::OnDuplicateUpdate(), CMacroFlowEditor::OnExportMenuClick(), CAgpValidateReader::OnGapOrComponent(), CMacroFlowEditor::OnManualEditMacro(), CMacroFlowEditor::OnManualEditMacroUpdate(), CAgpValidateReader::OnObjectChange(), CMacroWordSubstitutionDlg::OnRemove(), operator<<(), operator==(), CSeq_annot_SNP_Info_Reader::ParseAnnot(), CAlignDistGraph::Print(), CWNJobWatcher::Print(), CPdfDictionary::PrintTo(), CArgDependencyGroup::PrintUsage(), CCommandArgDescriptions::PrintUsage(), CReadBlastApp::ProcessCDD(), CBlastMasterNode::Processing(), CReportNode::Promote(), CDeleteQueue< const CTSE_ScopeInfo *, CTSE_ScopeInternalLock >::Put(), CPriorityTaxNodes::putIntoMap(), CGFFReader::Read(), ReadEnvironment(), CReadBlastApp::ReadTagMap(), CNCDistributionConf::ReConfig(), CNCPeriodicSync::ReConfig(), CFeatIdRemapper::RemapId(), SPSG_StatsData::SData< TDataId >::Report(), COperationTiming::Reset(), CDataSource_ScopeInfo::ResetHistory(), COperationTiming::Rotate(), CAnnotMetaDataJob::Run(), CAsnSubCacheCreateApplication::Run(), CFeatTreeSampleApp::Run(), s_AnalyzeLibraryOrder(), s_CompareOverlapping(), s_InitFeatures(), s_PopulateExtSet(), s_ShouldFetchOneByOne(), CGff3LocationMerger::SequenceSize(), CURLFetchCache::Set(), CMacroCompoundConstraintPanel::SetConstraints(), CLoadInfoMap< Key, Info >::SetMaxSize(), CConversionResultPanel::SetObjects(), TaxonomyTree::ShowTreeForAlignment(), CAlignResultsSet::size(), CAlignDistGraph::Size(), CTSE_LockSet::size(), CSeqsRange::size(), CNSAffinityRegistry::size(), CNSClientsRegistry::size(), CNSGroupsRegistry::size(), CNSScopeRegistry::size(), CNSTClientRegistry::Size(), CNSTServiceRegistry::Size(), CNSTUserCache::Size(), CBlobSplitterImpl::Split(), sReadAA_M(), CReadBlastApp::StoreBlast(), CGffBaseRecord::StrAttributes(), CDiscrepancyVisitorImpl< _Name >::Summarize(), sx_AddBits2(), CHandleRangeMap::TotalRangeIntersectingWith(), CObjectListWidgetSel::TransferDataToWindow(), CSparseGraph::Update(), CMacroFlowEditor::UpdateEditedMacro(), CMultAlign::Variations(), CSeq_annot_SNP_Info_Reader::Write(), CAsnSubCacheCreateApplication::WriteBlobsInSubCache(), CCSraAlignIterator::x_AddField(), CFastaReader::x_AddMultiwayAlignment(), CAlnTableDS::x_AdjustColumns(), CConsolidateLikeMods::x_ApplyToBioSource(), CObjectConverter::x_BuildGraph(), CWriteDB_ColumnIndex::x_BuildMetaData(), CScope_Impl::x_ClearCacheOnNewData(), CSVGRenderer::x_ClippingRect(), CAlnMixSegments::x_ConsolidateGaps(), CSeq_align_Mapper::x_ConvertAlignCvt(), CSelectionControl::x_DebugValid(), CNCMessageHandler::x_DoCmd_SyncStart(), CHistogramGlyph::x_DrawGraphMap(), CArgDependencyGroup::x_Evaluate(), CSGAlignScoringJob::x_Execute(), CLoadInfoMap< Key, Info >::x_GC(), CCreateGeneModelTask::x_GetCommand(), CDiagConsoleCache::x_GetItem(), CQueueDataBase::x_GetLastPurged(), CCompartApp::x_GetSeqLength(), CSelectionEvent::x_Init(), NSnpBins::CGeneMap::x_Init(), CSeq_annot_Info::x_InitFeatTableKeys(), CPSGCache_Base< string, shared_ptr< SPsgBlobInfo > >::x_LimitSize(), CSVGRenderer::x_LinearGradient(), CAsnSubCacheCreateApplication::x_LocateBlobsInCache(), CAlnMixMerger::x_Merge(), CSVGRenderer::x_PolygonStippleToPattern(), CObjectListWidgetSel::x_PopulateGroups(), CPhyTreeNodeAnalyzer::x_PrintNodeMap(), CAgpValidateReader::x_PrintTotals(), CNSClientsRegistry::x_PurgeWNodesAndReaders(), CSeq_loc_Mapper_Base::x_PushRangesToDstMix(), CAgpValidateApplication::x_ReportFastaSeqCount(), COperationTiming::x_SetupBlobSizeBins(), CMappingObjectLoader::x_ShowMappingDlg(), CSGFeatureJob::x_SortFeature_recursive(), CVectorTrimPanel::x_TrimSelected(), CRR_MetaInfo< TTraits >::x_UpdateNameRef(), CObjectListWidgetSel::x_UpdateUI(), CValidError_bioseq::x_ValidateCDSmRNAmatch(), CAgpValidateApplication::x_ValidateFile(), and FileMessenger::~FileMessenger().
◆ swap()
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Definition at line 118 of file map.hpp.
Referenced by CSGAlignmentDS::CalculateAlignmentScore(), CWriteDB_PackedSemiTree::Clear(), CPhrap_Seq::CopyFrom(), CTSE_ScopeInfo::ReleaseUsedTSEs(), CTSE_ScopeInfo::SetEditTSE(), CId2ReaderBase::x_ProcessGetSeqIdSeqId(), CVDBAliasNode::x_ReadLine(), CSeqDBAliasNode::x_ReadLine(), and CHttpResponse::x_Update().
◆ upper_bound() [1/2]
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◆ upper_bound() [2/2]
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Definition at line 155 of file map.hpp.
Referenced by CRangeUnion< CBGZFPos >::add_range(), CAlignCollapser::AddAlignment(), SBDB_CacheUnitStatistics::AddToHistogram(), CCompactLayout::BuildLayout(), CChainer::DropAlignmentInfo(), CAlignCollapser::FillGapsInAlignmentAndAddToGenomicGaps(), CAlignCollapser::FilterAlignments(), CChainer::FindSelenoproteinsClipProteinsToStartStop(), CBinaryRangeCacheWithLock< Position, Value >::get_lock(), SBamIndexRefIndex::GetAlnOverStarts(), CGnomonAnnotator_Base::MapModelsToOrigContig(), CGnomonAnnotator_Base::MapOneModelToOrigContig(), and CDiskFlusher::x_FlushNextFile().
◆ WLock()
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Definition at line 77 of file map.hpp.
Referenced by map_checker< std::map< string, string, less< string > > >::operator=(), map_checker< std::map< string, string, less< string > > >::operator[](), map_checker< std::map< string, string, less< string > > >::swap(), and map_checker< std::map< string, string, less< string > > >::~map_checker().
◆ WUnlock()
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Member Data Documentation
◆ m_Container
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Definition at line 61 of file map.hpp.
Referenced by map_checker< std::map< string, string, less< string > > >::check(), map_checker< std::map< string, string, less< string > > >::operator<(), map_checker< std::map< string, string, less< string > > >::operator=(), map_checker< std::map< string, string, less< string > > >::operator==(), map_checker< std::map< string, string, less< string > > >::operator[](), and map_checker< std::map< string, string, less< string > > >::swap().
◆ m_RCounter
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Definition at line 63 of file map.hpp.
Referenced by map_checker< std::map< string, string, less< string > > >::RLock(), map_checker< std::map< string, string, less< string > > >::RUnlock(), map_checker< std::map< string, string, less< string > > >::WLock(), and map_checker< std::map< string, string, less< string > > >::WUnlock().
◆ m_WCounter
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Definition at line 62 of file map.hpp.
Referenced by map_checker< std::map< string, string, less< string > > >::RLock(), map_checker< std::map< string, string, less< string > > >::RUnlock(), map_checker< std::map< string, string, less< string > > >::WLock(), and map_checker< std::map< string, string, less< string > > >::WUnlock().
The documentation for this class was generated from the following file:
- include/util/debug/map.hpp
