Search Toolkit Book for CMSPepHit
#include <objects/omssa/MSPepHit.hpp>
Inheritance diagram for CMSPepHit:
Collaboration diagram for CMSPepHit:
Public Member Functions | |
| CMSPepHit (void) | |
| ~CMSPepHit (void) | |
| Public Member Functions inherited from CMSPepHit_Base | |
| CMSPepHit_Base (void) | |
| virtual | ~CMSPepHit_Base (void) |
| DECLARE_INTERNAL_TYPE_INFO () | |
| bool | IsSetStart (void) const |
| start position (inclusive) in sequence Check if a value has been assigned to Start data member. More... | |
| bool | CanGetStart (void) const |
| Check if it is safe to call GetStart method. More... | |
| void | ResetStart (void) |
| Reset Start data member. More... | |
| TStart | GetStart (void) const |
| Get the Start member data. More... | |
| void | SetStart (TStart value) |
| Assign a value to Start data member. More... | |
| TStart & | SetStart (void) |
| Assign a value to Start data member. More... | |
| bool | IsSetStop (void) const |
| stop position (inclusive) in sequence Check if a value has been assigned to Stop data member. More... | |
| bool | CanGetStop (void) const |
| Check if it is safe to call GetStop method. More... | |
| void | ResetStop (void) |
| Reset Stop data member. More... | |
| TStop | GetStop (void) const |
| Get the Stop member data. More... | |
| void | SetStop (TStop value) |
| Assign a value to Stop data member. More... | |
| TStop & | SetStop (void) |
| Assign a value to Stop data member. More... | |
| bool | IsSetGi (void) const |
| genbank identifier Check if a value has been assigned to Gi data member. More... | |
| bool | CanGetGi (void) const |
| Check if it is safe to call GetGi method. More... | |
| void | ResetGi (void) |
| Reset Gi data member. More... | |
| TGi | GetGi (void) const |
| Get the Gi member data. More... | |
| void | SetGi (TGi value) |
| Assign a value to Gi data member. More... | |
| TGi & | SetGi (void) |
| Assign a value to Gi data member. More... | |
| bool | IsSetAccession (void) const |
| sequence accession Check if a value has been assigned to Accession data member. More... | |
| bool | CanGetAccession (void) const |
| Check if it is safe to call GetAccession method. More... | |
| void | ResetAccession (void) |
| Reset Accession data member. More... | |
| const TAccession & | GetAccession (void) const |
| Get the Accession member data. More... | |
| void | SetAccession (const TAccession &value) |
| Assign a value to Accession data member. More... | |
| void | SetAccession (TAccession &&value) |
| TAccession & | SetAccession (void) |
| Assign a value to Accession data member. More... | |
| bool | IsSetDefline (void) const |
| sequence description Check if a value has been assigned to Defline data member. More... | |
| bool | CanGetDefline (void) const |
| Check if it is safe to call GetDefline method. More... | |
| void | ResetDefline (void) |
| Reset Defline data member. More... | |
| const TDefline & | GetDefline (void) const |
| Get the Defline member data. More... | |
| void | SetDefline (const TDefline &value) |
| Assign a value to Defline data member. More... | |
| void | SetDefline (TDefline &&value) |
| TDefline & | SetDefline (void) |
| Assign a value to Defline data member. More... | |
| bool | IsSetProtlength (void) const |
| length of protein Check if a value has been assigned to Protlength data member. More... | |
| bool | CanGetProtlength (void) const |
| Check if it is safe to call GetProtlength method. More... | |
| void | ResetProtlength (void) |
| Reset Protlength data member. More... | |
| TProtlength | GetProtlength (void) const |
| Get the Protlength member data. More... | |
| void | SetProtlength (TProtlength value) |
| Assign a value to Protlength data member. More... | |
| TProtlength & | SetProtlength (void) |
| Assign a value to Protlength data member. More... | |
| bool | IsSetOid (void) const |
| blast library oid Check if a value has been assigned to Oid data member. More... | |
| bool | CanGetOid (void) const |
| Check if it is safe to call GetOid method. More... | |
| void | ResetOid (void) |
| Reset Oid data member. More... | |
| TOid | GetOid (void) const |
| Get the Oid member data. More... | |
| void | SetOid (TOid value) |
| Assign a value to Oid data member. More... | |
| TOid & | SetOid (void) |
| Assign a value to Oid data member. More... | |
| bool | IsSetReversed (void) const |
| reversed sequence Check if a value has been assigned to Reversed data member. More... | |
| bool | CanGetReversed (void) const |
| Check if it is safe to call GetReversed method. More... | |
| void | ResetReversed (void) |
| Reset Reversed data member. More... | |
| TReversed | GetReversed (void) const |
| Get the Reversed member data. More... | |
| void | SetReversed (TReversed value) |
| Assign a value to Reversed data member. More... | |
| TReversed & | SetReversed (void) |
| Assign a value to Reversed data member. More... | |
| bool | IsSetPepstart (void) const |
| AA before the peptide Check if a value has been assigned to Pepstart data member. More... | |
| bool | CanGetPepstart (void) const |
| Check if it is safe to call GetPepstart method. More... | |
| void | ResetPepstart (void) |
| Reset Pepstart data member. More... | |
| const TPepstart & | GetPepstart (void) const |
| Get the Pepstart member data. More... | |
| void | SetPepstart (const TPepstart &value) |
| Assign a value to Pepstart data member. More... | |
| void | SetPepstart (TPepstart &&value) |
| TPepstart & | SetPepstart (void) |
| Assign a value to Pepstart data member. More... | |
| bool | IsSetPepstop (void) const |
| AA after the peptide Check if a value has been assigned to Pepstop data member. More... | |
| bool | CanGetPepstop (void) const |
| Check if it is safe to call GetPepstop method. More... | |
| void | ResetPepstop (void) |
| Reset Pepstop data member. More... | |
| const TPepstop & | GetPepstop (void) const |
| Get the Pepstop member data. More... | |
| void | SetPepstop (const TPepstop &value) |
| Assign a value to Pepstop data member. More... | |
| void | SetPepstop (TPepstop &&value) |
| TPepstop & | SetPepstop (void) |
| Assign a value to Pepstop data member. More... | |
| virtual void | Reset (void) |
| Reset the whole object. More... | |
| Public Member Functions inherited from CSerialObject | |
| CSerialObject (void) | |
| virtual | ~CSerialObject (void) |
| virtual const CTypeInfo * | GetThisTypeInfo (void) const =0 |
| virtual void | Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) |
| Set object to copy of another one. More... | |
| virtual bool | Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const |
| Check if both objects contain the same values. More... | |
| virtual void | DebugDump (CDebugDumpContext ddc, unsigned int depth) const |
| Define method for dumping debug information. More... | |
| void | ThrowUnassigned (TMemberIndex index) const |
| void | ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const |
| bool | HasNamespaceName (void) const |
| Check if object data type has namespace name. More... | |
| const string & | GetNamespaceName (void) const |
| Get namespace name. More... | |
| bool | HasNamespacePrefix (void) const |
| Check if data type has namespace prefix. More... | |
| const string & | GetNamespacePrefix (void) const |
| Get namespace prefix. More... | |
| Public Member Functions inherited from CObject | |
| CObject (void) | |
| Constructor. More... | |
| CObject (const CObject &src) | |
| Copy constructor. More... | |
| virtual | ~CObject (void) |
| Destructor. More... | |
| CObject & | operator= (const CObject &src) THROWS_NONE |
| Assignment operator. More... | |
| bool | CanBeDeleted (void) const THROWS_NONE |
| Check if object can be deleted. More... | |
| bool | IsAllocatedInPool (void) const THROWS_NONE |
| Check if object is allocated in memory pool (not system heap) More... | |
| bool | Referenced (void) const THROWS_NONE |
| Check if object is referenced. More... | |
| bool | ReferencedOnlyOnce (void) const THROWS_NONE |
| Check if object is referenced only once. More... | |
| void | AddReference (void) const |
| Add reference to object. More... | |
| void | RemoveReference (void) const |
| Remove reference to object. More... | |
| void | ReleaseReference (void) const |
| Remove reference without deleting object. More... | |
| virtual void | DoNotDeleteThisObject (void) |
| Mark this object as not allocated in heap – do not delete this object. More... | |
| virtual void | DoDeleteThisObject (void) |
| Mark this object as allocated in heap – object can be deleted. More... | |
| void * | operator new (size_t size) |
| Define new operator for memory allocation. More... | |
| void * | operator new[] (size_t size) |
| Define new[] operator for 'array' memory allocation. More... | |
| void | operator delete (void *ptr) |
| Define delete operator for memory deallocation. More... | |
| void | operator delete[] (void *ptr) |
| Define delete[] operator for memory deallocation. More... | |
| void * | operator new (size_t size, void *place) |
| Define new operator. More... | |
| void | operator delete (void *ptr, void *place) |
| Define delete operator. More... | |
| void * | operator new (size_t size, CObjectMemoryPool *place) |
| Define new operator using memory pool. More... | |
| void | operator delete (void *ptr, CObjectMemoryPool *place) |
| Define delete operator. More... | |
| Public Member Functions inherited from CDebugDumpable | |
| CDebugDumpable (void) | |
| virtual | ~CDebugDumpable (void) |
| void | DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const |
| void | DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const |
| void | DumpToConsole (void) const |
Private Types | |
| typedef CMSPepHit_Base | Tparent |
Private Member Functions | |
| CMSPepHit (const CMSPepHit &value) | |
| CMSPepHit & | operator= (const CMSPepHit &value) |
Additional Inherited Members | |
| Public Types inherited from CMSPepHit_Base | |
| enum class | E_memberIndex { e__allMandatory = 0 , e_start , e_stop , e_gi , e_accession , e_defline , e_protlength , e_oid , e_reversed , e_pepstart , e_pepstop } |
| typedef int | TStart |
| typedef int | TStop |
| typedef NCBI_NS_NCBI::TGi | TGi |
| typedef string | TAccession |
| typedef string | TDefline |
| typedef int | TProtlength |
| typedef int | TOid |
| typedef bool | TReversed |
| typedef string | TPepstart |
| typedef string | TPepstop |
| typedef Tparent::CMemberIndex< E_memberIndex, 11 > | TmemberIndex |
| Public Types inherited from CObject | |
| enum | EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern } |
| Control filling of newly allocated memory. More... | |
| typedef CObjectCounterLocker | TLockerType |
| Default locker type for CRef. More... | |
| typedef atomic< Uint8 > | TCounter |
| Counter type is CAtomiCounter. More... | |
| typedef Uint8 | TCount |
| Alias for value type of counter. More... | |
| Static Public Member Functions inherited from CSerialObject | |
| static void | SetVerifyDataThread (ESerialVerifyData verify) |
| static void | SetVerifyDataGlobal (ESerialVerifyData verify) |
| static string | UnassignedString (void) |
| static CStringUTF8 | UnassignedStringUTF8 (void) |
| static char | UnassignedByte (void) |
| Static Public Member Functions inherited from CObject | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (void) |
| Define method to throw null pointer exception. More... | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (const type_info &type) |
| static EAllocFillMode | GetAllocFillMode (void) |
| static void | SetAllocFillMode (EAllocFillMode mode) |
| static void | SetAllocFillMode (const string &value) |
| Set mode from configuration parameter value. More... | |
| Static Public Member Functions inherited from CDebugDumpable | |
| static void | EnableDebugDump (bool on) |
| Static Public Attributes inherited from CSerialObject | |
| static const char * | ms_UnassignedStr = "<*unassigned*>" |
| static const char | ms_UnassignedByte = char(0xcd) |
| Static Public Attributes inherited from CObject | |
| static const TCount | eCounterBitsCanBeDeleted = 1 << 0 |
| Define possible object states. More... | |
| static const TCount | eCounterBitsInPlainHeap = 1 << 1 |
| Heap signature was found. More... | |
| static const TCount | eCounterBitsPlaceMask |
| Mask for 'in heap' state flags. More... | |
| static const int | eCounterStep = 1 << 2 |
| Skip over the "in heap" bits. More... | |
| static const TCount | eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2) |
| Minimal value for valid objects (reference counter is zero) Must be a single bit value. More... | |
| static const TCount | eCounterStateMask |
| Valid object, and object in heap. More... | |
| Protected Member Functions inherited from CObject | |
| virtual void | DeleteThis (void) |
| Virtual method "deleting" this object. More... | |
Detailed Description
CMSPepHit –.
Definition at line 65 of file MSPepHit.hpp.
The documentation for this class was generated from the following files:
- include/objects/omssa/MSPepHit.hpp
- src/objects/omssa/MSPepHit.cpp
