Search Toolkit Book for CSeq_data
#include <objects/seq/Seq_data.hpp>
Inheritance diagram for CSeq_data:
Collaboration diagram for CSeq_data:
Public Member Functions | |
| CSeq_data (void) | |
| CSeq_data (const string &value, E_Choice index) | |
| CSeq_data (const vector< char > &value, E_Choice index) | |
| ~CSeq_data (void) | |
| Public Member Functions inherited from CSeq_data_Base | |
| CSeq_data_Base (void) | |
| virtual | ~CSeq_data_Base (void) |
| DECLARE_INTERNAL_TYPE_INFO () | |
| virtual void | Reset (void) |
| Reset the whole object. More... | |
| virtual void | ResetSelection (void) |
| Reset the selection (set it to e_not_set). More... | |
| E_Choice | Which (void) const |
| Which variant is currently selected. More... | |
| void | CheckSelected (E_Choice index) const |
| Verify selection, throw exception if it differs from the expected. More... | |
| void | ThrowInvalidSelection (E_Choice index) const |
| Throw 'InvalidSelection' exception. More... | |
| void | Select (E_Choice index, EResetVariant reset=eDoResetVariant) |
| Select the requested variant if needed. More... | |
| void | Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool) |
| Select the requested variant if needed, allocating CObject variants from memory pool. More... | |
| bool | IsIupacna (void) const |
| Check if variant Iupacna is selected. More... | |
| const TIupacna & | GetIupacna (void) const |
| Get the variant data. More... | |
| TIupacna & | SetIupacna (void) |
| Select the variant. More... | |
| void | SetIupacna (const TIupacna &value) |
| Select the variant and set its data. More... | |
| bool | IsIupacaa (void) const |
| Check if variant Iupacaa is selected. More... | |
| const TIupacaa & | GetIupacaa (void) const |
| Get the variant data. More... | |
| TIupacaa & | SetIupacaa (void) |
| Select the variant. More... | |
| void | SetIupacaa (const TIupacaa &value) |
| Select the variant and set its data. More... | |
| bool | IsNcbi2na (void) const |
| Check if variant Ncbi2na is selected. More... | |
| const TNcbi2na & | GetNcbi2na (void) const |
| Get the variant data. More... | |
| TNcbi2na & | SetNcbi2na (void) |
| Select the variant. More... | |
| bool | IsNcbi4na (void) const |
| Check if variant Ncbi4na is selected. More... | |
| const TNcbi4na & | GetNcbi4na (void) const |
| Get the variant data. More... | |
| TNcbi4na & | SetNcbi4na (void) |
| Select the variant. More... | |
| bool | IsNcbi8na (void) const |
| Check if variant Ncbi8na is selected. More... | |
| const TNcbi8na & | GetNcbi8na (void) const |
| Get the variant data. More... | |
| TNcbi8na & | SetNcbi8na (void) |
| Select the variant. More... | |
| bool | IsNcbipna (void) const |
| Check if variant Ncbipna is selected. More... | |
| const TNcbipna & | GetNcbipna (void) const |
| Get the variant data. More... | |
| TNcbipna & | SetNcbipna (void) |
| Select the variant. More... | |
| bool | IsNcbi8aa (void) const |
| Check if variant Ncbi8aa is selected. More... | |
| const TNcbi8aa & | GetNcbi8aa (void) const |
| Get the variant data. More... | |
| TNcbi8aa & | SetNcbi8aa (void) |
| Select the variant. More... | |
| bool | IsNcbieaa (void) const |
| Check if variant Ncbieaa is selected. More... | |
| const TNcbieaa & | GetNcbieaa (void) const |
| Get the variant data. More... | |
| TNcbieaa & | SetNcbieaa (void) |
| Select the variant. More... | |
| void | SetNcbieaa (const TNcbieaa &value) |
| Select the variant and set its data. More... | |
| bool | IsNcbipaa (void) const |
| Check if variant Ncbipaa is selected. More... | |
| const TNcbipaa & | GetNcbipaa (void) const |
| Get the variant data. More... | |
| TNcbipaa & | SetNcbipaa (void) |
| Select the variant. More... | |
| bool | IsNcbistdaa (void) const |
| Check if variant Ncbistdaa is selected. More... | |
| const TNcbistdaa & | GetNcbistdaa (void) const |
| Get the variant data. More... | |
| TNcbistdaa & | SetNcbistdaa (void) |
| Select the variant. More... | |
| bool | IsGap (void) const |
| Check if variant Gap is selected. More... | |
| const TGap & | GetGap (void) const |
| Get the variant data. More... | |
| TGap & | SetGap (void) |
| Select the variant. More... | |
| void | SetGap (TGap &value) |
| Select the variant and set its data. More... | |
| Public Member Functions inherited from CSerialObject | |
| CSerialObject (void) | |
| virtual | ~CSerialObject (void) |
| virtual const CTypeInfo * | GetThisTypeInfo (void) const =0 |
| virtual void | Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) |
| Set object to copy of another one. More... | |
| virtual bool | Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const |
| Check if both objects contain the same values. More... | |
| virtual void | DebugDump (CDebugDumpContext ddc, unsigned int depth) const |
| Define method for dumping debug information. More... | |
| void | ThrowUnassigned (TMemberIndex index) const |
| void | ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const |
| bool | HasNamespaceName (void) const |
| Check if object data type has namespace name. More... | |
| const string & | GetNamespaceName (void) const |
| Get namespace name. More... | |
| bool | HasNamespacePrefix (void) const |
| Check if data type has namespace prefix. More... | |
| const string & | GetNamespacePrefix (void) const |
| Get namespace prefix. More... | |
| Public Member Functions inherited from CObject | |
| CObject (void) | |
| Constructor. More... | |
| CObject (const CObject &src) | |
| Copy constructor. More... | |
| virtual | ~CObject (void) |
| Destructor. More... | |
| CObject & | operator= (const CObject &src) THROWS_NONE |
| Assignment operator. More... | |
| bool | CanBeDeleted (void) const THROWS_NONE |
| Check if object can be deleted. More... | |
| bool | IsAllocatedInPool (void) const THROWS_NONE |
| Check if object is allocated in memory pool (not system heap) More... | |
| bool | Referenced (void) const THROWS_NONE |
| Check if object is referenced. More... | |
| bool | ReferencedOnlyOnce (void) const THROWS_NONE |
| Check if object is referenced only once. More... | |
| void | AddReference (void) const |
| Add reference to object. More... | |
| void | RemoveReference (void) const |
| Remove reference to object. More... | |
| void | ReleaseReference (void) const |
| Remove reference without deleting object. More... | |
| virtual void | DoNotDeleteThisObject (void) |
| Mark this object as not allocated in heap – do not delete this object. More... | |
| virtual void | DoDeleteThisObject (void) |
| Mark this object as allocated in heap – object can be deleted. More... | |
| void * | operator new (size_t size) |
| Define new operator for memory allocation. More... | |
| void * | operator new[] (size_t size) |
| Define new[] operator for 'array' memory allocation. More... | |
| void | operator delete (void *ptr) |
| Define delete operator for memory deallocation. More... | |
| void | operator delete[] (void *ptr) |
| Define delete[] operator for memory deallocation. More... | |
| void * | operator new (size_t size, void *place) |
| Define new operator. More... | |
| void | operator delete (void *ptr, void *place) |
| Define delete operator. More... | |
| void * | operator new (size_t size, CObjectMemoryPool *place) |
| Define new operator using memory pool. More... | |
| void | operator delete (void *ptr, CObjectMemoryPool *place) |
| Define delete operator. More... | |
| Public Member Functions inherited from CDebugDumpable | |
| CDebugDumpable (void) | |
| virtual | ~CDebugDumpable (void) |
| void | DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const |
| void | DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const |
| void | DumpToConsole (void) const |
Private Types | |
| typedef CSeq_data_Base | Tparent |
Private Member Functions | |
| CSeq_data (const CSeq_data &value) | |
| CSeq_data & | operator= (const CSeq_data &value) |
| void | DoConstruct (const string &value, E_Choice index) |
| void | DoConstruct (const vector< char > &value, E_Choice index) |
Additional Inherited Members | |
| Public Types inherited from CSeq_data_Base | |
| enum | E_Choice { e_not_set = 0 , e_Iupacna , e_Iupacaa , e_Ncbi2na , e_Ncbi4na , e_Ncbi8na , e_Ncbipna , e_Ncbi8aa , e_Ncbieaa , e_Ncbipaa , e_Ncbistdaa , e_Gap } |
| Choice variants. More... | |
| enum | E_ChoiceStopper { e_MaxChoice = 12 } |
| Maximum+1 value of the choice variant enumerator. More... | |
| typedef CIUPACna | TIupacna |
| typedef CIUPACaa | TIupacaa |
| typedef CNCBI2na | TNcbi2na |
| typedef CNCBI4na | TNcbi4na |
| typedef CNCBI8na | TNcbi8na |
| typedef CNCBIpna | TNcbipna |
| typedef CNCBI8aa | TNcbi8aa |
| typedef CNCBIeaa | TNcbieaa |
| typedef CNCBIpaa | TNcbipaa |
| typedef CNCBIstdaa | TNcbistdaa |
| typedef CSeq_gap | TGap |
| Public Types inherited from CObject | |
| enum | EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern } |
| Control filling of newly allocated memory. More... | |
| typedef CObjectCounterLocker | TLockerType |
| Default locker type for CRef. More... | |
| typedef atomic< Uint8 > | TCounter |
| Counter type is CAtomiCounter. More... | |
| typedef Uint8 | TCount |
| Alias for value type of counter. More... | |
| Static Public Member Functions inherited from CSeq_data_Base | |
| static string | SelectionName (E_Choice index) |
| Retrieve selection name (for diagnostic purposes). More... | |
| Static Public Member Functions inherited from CSerialObject | |
| static void | SetVerifyDataThread (ESerialVerifyData verify) |
| static void | SetVerifyDataGlobal (ESerialVerifyData verify) |
| static string | UnassignedString (void) |
| static CStringUTF8 | UnassignedStringUTF8 (void) |
| static char | UnassignedByte (void) |
| Static Public Member Functions inherited from CObject | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (void) |
| Define method to throw null pointer exception. More... | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (const type_info &type) |
| static EAllocFillMode | GetAllocFillMode (void) |
| static void | SetAllocFillMode (EAllocFillMode mode) |
| static void | SetAllocFillMode (const string &value) |
| Set mode from configuration parameter value. More... | |
| Static Public Member Functions inherited from CDebugDumpable | |
| static void | EnableDebugDump (bool on) |
| Static Public Attributes inherited from CSerialObject | |
| static const char * | ms_UnassignedStr = "<*unassigned*>" |
| static const char | ms_UnassignedByte = char(0xcd) |
| Static Public Attributes inherited from CObject | |
| static const TCount | eCounterBitsCanBeDeleted = 1 << 0 |
| Define possible object states. More... | |
| static const TCount | eCounterBitsInPlainHeap = 1 << 1 |
| Heap signature was found. More... | |
| static const TCount | eCounterBitsPlaceMask |
| Mask for 'in heap' state flags. More... | |
| static const int | eCounterStep = 1 << 2 |
| Skip over the "in heap" bits. More... | |
| static const TCount | eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2) |
| Minimal value for valid objects (reference counter is zero) Must be a single bit value. More... | |
| static const TCount | eCounterStateMask |
| Valid object, and object in heap. More... | |
| Protected Member Functions inherited from CObject | |
| virtual void | DeleteThis (void) |
| Virtual method "deleting" this object. More... | |
Detailed Description
Definition at line 52 of file Seq_data.hpp.
Member Typedef Documentation
◆ Tparent
|
private |
Definition at line 54 of file Seq_data.hpp.
Constructor & Destructor Documentation
◆ CSeq_data() [1/4]
|
inline |
Definition at line 79 of file Seq_data.hpp.
◆ CSeq_data() [2/4]
Definition at line 63 of file Seq_data.cpp.
References DoConstruct(), CSeq_data_Base::e_Iupacaa, CSeq_data_Base::e_Iupacna, CSeq_data_Base::e_Ncbi2na, CSeq_data_Base::e_Ncbi4na, CSeq_data_Base::e_Ncbi8aa, CSeq_data_Base::e_Ncbi8na, CSeq_data_Base::e_Ncbieaa, CSeq_data_Base::e_Ncbipaa, CSeq_data_Base::e_Ncbipna, CSeq_data_Base::e_Ncbistdaa, eUnknown, NCBI_THROW, and rapidjson::value.
◆ CSeq_data() [3/4]
Definition at line 97 of file Seq_data.cpp.
References DoConstruct(), CSeq_data_Base::e_Iupacaa, CSeq_data_Base::e_Iupacna, CSeq_data_Base::e_Ncbi2na, CSeq_data_Base::e_Ncbi4na, CSeq_data_Base::e_Ncbi8aa, CSeq_data_Base::e_Ncbi8na, CSeq_data_Base::e_Ncbieaa, CSeq_data_Base::e_Ncbipaa, CSeq_data_Base::e_Ncbipna, CSeq_data_Base::e_Ncbistdaa, eUnknown, NCBI_THROW, and rapidjson::value.
◆ ~CSeq_data()
| CSeq_data::~CSeq_data | ( | void | ) |
Definition at line 129 of file Seq_data.cpp.
◆ CSeq_data() [4/4]
Member Function Documentation
◆ DoConstruct() [1/2]
Definition at line 133 of file Seq_data.cpp.
References CSeq_data_Base::e_Iupacaa, CSeq_data_Base::e_Iupacna, CSeq_data_Base::e_Ncbieaa, eUnknown, NCBI_THROW, CSeq_data_Base::SetIupacaa(), CSeq_data_Base::SetIupacna(), CSeq_data_Base::SetNcbieaa(), and rapidjson::value.
Referenced by CSeq_data().
◆ DoConstruct() [2/2]
Definition at line 153 of file Seq_data.cpp.
References CSeq_data_Base::e_Ncbi2na, CSeq_data_Base::e_Ncbi4na, CSeq_data_Base::e_Ncbi8aa, CSeq_data_Base::e_Ncbi8na, CSeq_data_Base::e_Ncbipaa, CSeq_data_Base::e_Ncbipna, CSeq_data_Base::e_Ncbistdaa, eUnknown, NCBI_THROW, CAliasBase< TPrim >::Set(), CSeq_data_Base::SetNcbi2na(), CSeq_data_Base::SetNcbi4na(), CSeq_data_Base::SetNcbi8aa(), CSeq_data_Base::SetNcbi8na(), CSeq_data_Base::SetNcbipaa(), CSeq_data_Base::SetNcbipna(), CSeq_data_Base::SetNcbistdaa(), and rapidjson::value.
◆ operator=()
The documentation for this class was generated from the following files:
- include/objects/seq/Seq_data.hpp
- src/objects/seq/Seq_data.cpp
