Search Toolkit Book for CSeq_id_Handle

#include <objects/seq/seq_id_handle.hpp>

Inheritance diagram for CSeq_id_Handle:

Collaboration diagram for CSeq_id_Handle:

Classes
struct	PLessOrdered
	Predicate for sorting CSeq_id_Handles in a defined order. More...

Public Types
typedef CSeq_id_Info::TPacked	TPacked

typedef CSeq_id_Info::TVariant	TVariant

typedef set< CSeq_id_Handle >	TMatches

Public Member Functions
	CSeq_id_Handle (void)

	CSeq_id_Handle (const CSeq_id_Info *info, TPacked packed=0, TVariant variant=0)

	CSeq_id_Handle (ENull)

bool	operator== (const CSeq_id_Handle &handle) const

bool	operator!= (const CSeq_id_Handle &handle) const

bool	operator< (const CSeq_id_Handle &handle) const

bool	operator== (const CSeq_id &id) const

int	CompareOrdered (const CSeq_id_Handle &id) const
	Compare ids in a defined order (see CSeq_id::CompareOrdered()) More...

	DECLARE_OPERATOR_BOOL_REF (m_Info)
	Check if the handle is a valid or an empty one. More...

void	Reset (void)
	Reset the handle (remove seq-id reference) More...

bool	HaveMatchingHandles (void) const

bool	HaveReverseMatch (void) const

bool	HaveMatchingHandles (EAllowWeakMatch allow_weak_match) const

bool	HaveReverseMatch (EAllowWeakMatch allow_weak_match) const

void	GetMatchingHandles (TMatches &matches) const

void	GetReverseMatchingHandles (TMatches &matches) const

void	GetMatchingHandles (TMatches &matches, EAllowWeakMatch allow_weak_match) const

void	GetReverseMatchingHandles (TMatches &matches, EAllowWeakMatch allow_weak_match) const

bool	MatchesTo (const CSeq_id_Handle &h) const
	True if *this matches to h. More...

bool	IsBetter (const CSeq_id_Handle &h) const
	True if "this" is a better bioseq than "h". More...

string	AsString (void) const

CSeq_id::E_Choice	Which (void) const

bool	IsPacked (void) const

TPacked	GetPacked (void) const

bool	IsSetVariant (void) const

TVariant	GetVariant (void) const

bool	IsGi (void) const

TGi	GetGi (void) const

bool	IsAccVer (void) const

unsigned	GetHash (void) const

CSeq_id::EAccessionInfo	IdentifyAccession (void) const

CConstRef< CSeq_id >	GetSeqId (void) const

CConstRef< CSeq_id >	GetSeqIdOrNull (void) const

CSeq_id_Mapper &	GetMapper (void) const

void	Swap (CSeq_id_Handle &idh)

bool	IsAllowedSNPScaleLimit (CSeq_id::ESNPScaleLimit scale_limit) const

const CSeq_id_Info *	x_GetInfo (void) const

Static Public Member Functions
static CSeq_id_Handle	GetHandle (const CSeq_id &id)
	Normal way of getting a handle, works for any seq-id. More...

static CSeq_id_Handle	GetHandle (const string &str_id)
	Construct CSeq_id from string representation and return handle for it. More...

static CSeq_id_Handle	GetHandle (TGi gi)
	Faster way to create a handle for a gi. More...

static CSeq_id_Handle	GetGiHandle (TGi gi)
	Faster way to create a handle for a gi. More...

Private Attributes
CConstRef< CSeq_id_Info, CSeq_id_InfoLocker >	m_Info

TPacked	m_Packed

TVariant	m_Variant

Friends
class	CSeq_id_Mapper

class	CSeq_id_Which_Tree

Detailed Description

Definition at line 157 of file seq_id_handle.hpp.

The documentation for this class was generated from the following files:

include/objects/seq/seq_id_handle.hpp
src/objects/seq/seq_id_handle.cpp

Classes

Public Types

Public Member Functions

Static Public Member Functions

Private Attributes

Friends

Detailed Description