Search Toolkit Book for CSrcTableDbxrefColumn
#include <gui/packages/pkg_sequence_edit/srcedit_util.hpp>
Inheritance diagram for CSrcTableDbxrefColumn:
Collaboration diagram for CSrcTableDbxrefColumn:
Public Member Functions | |
| CSrcTableDbxrefColumn (const string &db_name=kEmptyStr) | |
| virtual string | GetFromBioSource (const objects::CBioSource &biosrc) const |
| virtual vector< string > | GetValsFromBioSource (const objects::CBioSource &biosrc) const |
| virtual bool | AllowMultipleValues () |
| virtual bool | AddToBioSource (objects::CBioSource &in_out_bioSource, const string &newValue, objects::edit::EExistingText existing_text) |
| virtual void | ClearInBioSource (objects::CBioSource &in_out_bioSource) |
| Public Member Functions inherited from CSrcTableColumnBase | |
| virtual string | GetLabel () const |
| virtual vector< string > | IsValid (const vector< string > &values) |
| virtual void | SetConstraint (const string &field_name, CConstRef< edit::CStringConstraint > string_constraint) |
| vector< CRef< objects::edit::CApplyObject > > | GetApplyObjects (CBioseq_Handle bsh) |
| vector< CConstRef< CObject > > | GetObjects (CBioseq_Handle bsh) |
| string | GetVal (const CObject &object) |
| vector< string > | GetVals (const CObject &object) |
| void | ClearVal (CObject &object) |
| void | SetSourceType (ESourceType type) |
| virtual void | AddToBioSource (objects::CBioSource &in_out_bioSource, const string &newValue) |
| virtual string | GetLabel () const |
| Public Member Functions inherited from CObject | |
| CObject (void) | |
| Constructor. More... | |
| CObject (const CObject &src) | |
| Copy constructor. More... | |
| virtual | ~CObject (void) |
| Destructor. More... | |
| CObject & | operator= (const CObject &src) THROWS_NONE |
| Assignment operator. More... | |
| bool | CanBeDeleted (void) const THROWS_NONE |
| Check if object can be deleted. More... | |
| bool | IsAllocatedInPool (void) const THROWS_NONE |
| Check if object is allocated in memory pool (not system heap) More... | |
| bool | Referenced (void) const THROWS_NONE |
| Check if object is referenced. More... | |
| bool | ReferencedOnlyOnce (void) const THROWS_NONE |
| Check if object is referenced only once. More... | |
| void | AddReference (void) const |
| Add reference to object. More... | |
| void | RemoveReference (void) const |
| Remove reference to object. More... | |
| void | ReleaseReference (void) const |
| Remove reference without deleting object. More... | |
| virtual void | DoNotDeleteThisObject (void) |
| Mark this object as not allocated in heap – do not delete this object. More... | |
| virtual void | DoDeleteThisObject (void) |
| Mark this object as allocated in heap – object can be deleted. More... | |
| void * | operator new (size_t size) |
| Define new operator for memory allocation. More... | |
| void * | operator new[] (size_t size) |
| Define new[] operator for 'array' memory allocation. More... | |
| void | operator delete (void *ptr) |
| Define delete operator for memory deallocation. More... | |
| void | operator delete[] (void *ptr) |
| Define delete[] operator for memory deallocation. More... | |
| void * | operator new (size_t size, void *place) |
| Define new operator. More... | |
| void | operator delete (void *ptr, void *place) |
| Define delete operator. More... | |
| void * | operator new (size_t size, CObjectMemoryPool *place) |
| Define new operator using memory pool. More... | |
| void | operator delete (void *ptr, CObjectMemoryPool *place) |
| Define delete operator. More... | |
| virtual void | DebugDump (CDebugDumpContext ddc, unsigned int depth) const |
| Define method for dumping debug information. More... | |
| Public Member Functions inherited from CDebugDumpable | |
| CDebugDumpable (void) | |
| virtual | ~CDebugDumpable (void) |
| void | DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const |
| void | DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const |
| void | DumpToConsole (void) const |
Private Attributes | |
| string | m_DbName |
Additional Inherited Members | |
| Public Types inherited from CSrcTableColumnBase | |
| enum | ESourceType { eNotSet = 0 , eDescriptor , eFeature } |
| Public Types inherited from CObject | |
| enum | EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern } |
| Control filling of newly allocated memory. More... | |
| typedef CObjectCounterLocker | TLockerType |
| Default locker type for CRef. More... | |
| typedef atomic< Uint8 > | TCounter |
| Counter type is CAtomiCounter. More... | |
| typedef Uint8 | TCount |
| Alias for value type of counter. More... | |
| Static Public Member Functions inherited from CObject | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (void) |
| Define method to throw null pointer exception. More... | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (const type_info &type) |
| static EAllocFillMode | GetAllocFillMode (void) |
| static void | SetAllocFillMode (EAllocFillMode mode) |
| static void | SetAllocFillMode (const string &value) |
| Set mode from configuration parameter value. More... | |
| Static Public Member Functions inherited from CDebugDumpable | |
| static void | EnableDebugDump (bool on) |
| Static Public Attributes inherited from CObject | |
| static const TCount | eCounterBitsCanBeDeleted = 1 << 0 |
| Define possible object states. More... | |
| static const TCount | eCounterBitsInPlainHeap = 1 << 1 |
| Heap signature was found. More... | |
| static const TCount | eCounterBitsPlaceMask |
| Mask for 'in heap' state flags. More... | |
| static const int | eCounterStep = 1 << 2 |
| Skip over the "in heap" bits. More... | |
| static const TCount | eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2) |
| Minimal value for valid objects (reference counter is zero) Must be a single bit value. More... | |
| static const TCount | eCounterStateMask |
| Valid object, and object in heap. More... | |
| Protected Member Functions inherited from CObject | |
| virtual void | DeleteThis (void) |
| Virtual method "deleting" this object. More... | |
Detailed Description
Definition at line 338 of file srcedit_util.hpp.
Constructor & Destructor Documentation
◆ CSrcTableDbxrefColumn()
Definition at line 341 of file srcedit_util.hpp.
Member Function Documentation
◆ AddToBioSource()
|
virtual |
Reimplemented from CSrcTableColumnBase.
Definition at line 2537 of file srcedit_util.cpp.
References AddValueToString(), EDIT_EACH_DBXREF_ON_ORGREF, eExistingText_leave_old, NStr::EqualCase(), NStr::IsBlank(), m_DbName, CDbtag_Base::SetDb(), CBioSource_Base::SetOrg(), CDbtag_Base::SetTag(), NStr::Split(), NStr::SplitInTwo(), NStr::StringToInt(), tag, val, and rapidjson::value.
◆ AllowMultipleValues()
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virtual |
Reimplemented from CSrcTableColumnBase.
Definition at line 2532 of file srcedit_util.cpp.
References NStr::IsBlank(), m_DbName, and true.
◆ ClearInBioSource()
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virtual |
Reimplemented from CSrcTableColumnBase.
Definition at line 2590 of file srcedit_util.cpp.
◆ GetFromBioSource()
Implements CSrcTableColumnBase.
Definition at line 2490 of file srcedit_util.cpp.
References NStr::EqualCase(), FOR_EACH_DBXREF_ON_ORGREF, COrg_ref_Base::GetDb(), CBioSource_Base::GetOrg(), NStr::IsBlank(), COrg_ref_Base::IsSetDb(), kEmptyStr, label, and m_DbName.
Referenced by GetValsFromBioSource().
◆ GetValsFromBioSource()
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virtual |
Reimplemented from CSrcTableColumnBase.
Definition at line 2512 of file srcedit_util.cpp.
References FOR_EACH_DBXREF_ON_ORGREF, GetFromBioSource(), CBioSource_Base::GetOrg(), NStr::IsBlank(), COrg_ref_Base::IsSetDb(), label, and m_DbName.
Member Data Documentation
◆ m_DbName
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private |
Definition at line 352 of file srcedit_util.hpp.
Referenced by AddToBioSource(), AllowMultipleValues(), GetFromBioSource(), and GetValsFromBioSource().
The documentation for this class was generated from the following files:
- include/gui/packages/pkg_sequence_edit/srcedit_util.hpp
- src/gui/packages/pkg_sequence_edit/srcedit_util.cpp
