#include <ncbi_pch.hpp>
#include <objmgr/util/seq_loc_util.hpp>
#include <util/sequtil/sequtil_convert.hpp>
#include <objmgr/util/feature.hpp>
#include <objmgr/util/sequence.hpp>
#include <objmgr/seq_annot_ci.hpp>
#include <objmgr/bioseq_ci.hpp>
#include <objmgr/object_manager.hpp>
#include <gui/widgets/edit/bioseq_editor.hpp>
#include <objtools/edit/string_constraint.hpp>
#include <gui/objutils/cmd_create_feat.hpp>
#include <gui/objutils/cmd_change_seq_feat.hpp>
#include <objects/seqfeat/seqfeat_macros.hpp>
#include <objects/seqfeat/Gb_qual.hpp>
#include <objects/general/Dbtag.hpp>
#include <objects/general/Object_id.hpp>
#include <objects/seqfeat/Genetic_code.hpp>
#include <objtools/edit/cds_fix.hpp>
#include <objects/seq/Seq_data.hpp>
#include <objmgr/seq_vector.hpp>
#include <objmgr/impl/synonyms.hpp>
#include <gui/packages/pkg_sequence_edit/editing_actions.hpp>
#include <gui/packages/pkg_sequence_edit/editing_action_features.hpp>
#include <gui/packages/pkg_sequence_edit/editing_action_constraint.hpp>

Include dependency graph for editing_action_features.cpp:

Go to the SVN repository for this file.

Functions
	USING_SCOPE (objects)

static bool	s_IsATGC (char ch)

static const string	s_GetExpansion (const string &ch)

static vector< string >	ParseDegenerateCodons (string codon)

IEditingActionFeat *	CreateActionFeat (CSeq_entry_Handle seh, string field, const CSeqFeatData::ESubtype subtype, const CSeqFeatData::E_Choice feat_type, const string &ncRNA_class)

IEditingActionFeat *	CreateActionRna (CSeq_entry_Handle seh, string field, const CSeqFeatData::ESubtype subtype, const string &ncRNA_class)

IEditingActionFeat *	CreateActionCdsGeneProt (CSeq_entry_Handle seh, string field, const CSeqFeatData::ESubtype subtype, const string &ncRNA_class)

Variables
static const string	kAmbiguities = "MRSVWYHKDBN"

static const string	kReplacements []

Function Documentation

◆ CreateActionCdsGeneProt()

IEditingActionFeat* CreateActionCdsGeneProt	(	CSeq_entry_Handle	seh,
		string	field,
		const CSeqFeatData::ESubtype	subtype,
		const string &	ncRNA_class
	)

Definition at line 4084 of file editing_action_features.cpp.

References CSeqFeatData::GetTypeFromSubtype(), NULL, and NStr::ToLower().

Referenced by CreateAction().

◆ CreateActionFeat()

IEditingActionFeat* CreateActionFeat	(	CSeq_entry_Handle	seh,
		string	field,
		const CSeqFeatData::ESubtype	subtype,
		const CSeqFeatData::E_Choice	feat_type,
		const string &	ncRNA_class
	)