entry.cpp File Reference

#include <ncbi_pch.hpp>
#include <objects/seqcode/Seq_code_type.hpp>
#include "ftacpp.hpp"
#include "index.h"
#include "ftaerr.hpp"
#include "indx_err.h"
#include "utilfun.h"
#include "ftablock.h"
#include "entry.h"
#include "indx_blk.h"
#include "genbank.h"

Include dependency graph for entry.cpp:

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Macros
#define	THIS_FILE   "entry.cpp"

Functions
	USING_SCOPE (objects)
static size_t	FileReadBuf (char *to, size_t len, FileBuf &ffbuf)
EntryPtr	LoadEntryGenbank (ParserPtr pp, size_t offset, size_t len)
DataBlkPtr	LoadEntry (ParserPtr pp, size_t offset, size_t len)

Macro Definition Documentation

THIS_FILE

#define THIS_FILE   "entry.cpp"

Definition at line 50 of file entry.cpp.

Function Documentation

FileReadBuf()

static size_t FileReadBuf ( char *  to, size_t  len, FileBuf &  ffbuf  )

static

Definition at line 190 of file entry.cpp.

References FileBuf::current, i, and len.

Referenced by LoadEntry(), and LoadEntryGenbank().

LoadEntry()

DataBlkPtr LoadEntry	(	ParserPtr	pp,
		size_t	offset,
		size_t	len
	)

Definition at line 300 of file entry.cpp.

References Parser::EMBL, ERR_FORMAT_DirSubMode, ERR_FORMAT_NonAsciiChar, ERR_INPUT_CannotReadEntry, ErrPostEx, ErrPostStr, Parser::ffbuf, FileReadBuf(), Parser::format, fta_StringCpy(), i, len, DataBlk::len, MemFree(), DataBlk::mOffset, DataBlk::mpData, DataBlk::mpNext, Parser::NCBI, offset, ParFlat_ENTRYNODE, FileBuf::set_offs(), SEV_FATAL, SEV_WARNING, Parser::source, and StringNew().

Referenced by EmblAscii(), EmblIndex(), GenBankAsciiOrig(), SprotAscii(), and SprotIndex().

LoadEntryGenbank()

EntryPtr LoadEntryGenbank	(	ParserPtr	pp,
		size_t	offset,
		size_t	len
	)

Definition at line 217 of file entry.cpp.

References Parser::EMBL, ERR_FORMAT_DirSubMode, ERR_FORMAT_NonAsciiChar, ERR_INPUT_CannotReadEntry, ErrPostEx, ErrPostStr, Parser::ffbuf, FileReadBuf(), Parser::format, fta_StringCpy(), i, len, DataBlk::len, MemFree(), DataBlk::mOffset, DataBlk::mpNext, Parser::NCBI, offset, ParFlat_ENTRYNODE, FileBuf::set_offs(), SEV_FATAL, SEV_WARNING, Parser::source, and StringNew().

Referenced by GenBankAscii().

USING_SCOPE()

USING_SCOPE

(

objects

)