ftanet.h File Reference

#include <objtools/flatfile/flatfile_parse_info.hpp>

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Namespaces
	objects

Functions
CRef< objects::COrg_ref >	fta_fix_orgref_byid (ParserPtr pp, TTaxId taxid, bool *drop, bool isoh)
void	fta_find_pub_explore (ParserPtr pp, TEntryList &seq_entries)
void	fta_fill_find_pub_option (ParserPtr pp, bool htag, bool rtag)
Int4	fta_is_con_div (ParserPtr pp, const objects::CSeq_id &id, const Char *acc)
void	fta_fix_orgref (ParserPtr pp, objects::COrg_ref &org_ref, bool *drop, char *organelle)

Function Documentation

fta_fill_find_pub_option()

void fta_fill_find_pub_option	(	ParserPtr	pp,
		bool	htag,
		bool	rtag
	)

Definition at line 479 of file ftanet.cpp.

References Parser::SFindPubOptions::always_look, Parser::fpo, Parser::SFindPubOptions::merge_ids, and Parser::SFindPubOptions::replace_cit.

Referenced by Flat2AsnCheck().

fta_find_pub_explore()

void fta_find_pub_explore	(	ParserPtr	pp,
		TEntryList &	seq_entries
	)

Definition at line 753 of file ftanet.cpp.

References CFindPub::Apply(), fta_init_med_server(), Parser::medserver, and Parser::normalize.

Referenced by GenBankAsciiOrig(), OutputEmblAsn(), SpPrepareEntry(), and XMLAscii().

fta_fix_orgref()

void fta_fix_orgref	(	ParserPtr	pp,
		objects::COrg_ref &	org_ref,
		bool *	drop,
		char *	organelle
	)

fta_fix_orgref_byid()

CRef<objects::COrg_ref> fta_fix_orgref_byid	(	ParserPtr	pp,
		TTaxId	taxid,
		bool *	drop,
		bool	isoh
	)

Definition at line 848 of file ftanet.cpp.

References ERR_SERVER_TaxNameWasFound, ERR_SERVER_TaxServerDown, ErrPostEx, fta_get_orgref_byid(), fta_init_tax_server(), CRef< C, Locker >::NotEmpty(), SEV_FATAL, SEV_INFO, TAX_ID_TO, and Parser::taxserver.

Referenced by fta_replace_org(), and GetSprotDescr().

fta_is_con_div()

Int4 fta_is_con_div	(	ParserPtr	pp,
		const objects::CSeq_id &	id,
		const Char *	acc
	)