U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



M_zebra_UMD2

Organism name:
Maylandia zebra (zebra mbuna)
Infraspecific name:
Ecotype: Mazinzi reef
Isolate:
#2_Kocher and #3_Kocher
Sex:
pooled male and female
BioSample:
SAMN03892560
BioProject:
PRJNA60369
Submitter:
University of Maryland
Date:
2018/01/10
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000238955.4 (replaced)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
AGTA04
Assembly method:
FALCON v. 0.4.0
Expected final version:
yes
Genome coverage:
65.0x
Sequencing technology:
PacBio; Illumina

IDs: 1516161 [UID] 5853318 [GenBank]

See Genome Information for Maylandia zebra

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length957,200,631
Total ungapped length957,136,531
Gaps between scaffolds0
Number of scaffolds1,690
Scaffold N5032,647,892
Scaffold L5013
Number of contigs2,331
Contig N501,407,087
Contig L50189
Total number of chromosomes and plasmids23
Number of component sequences (WGS or clone)1,690

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_000238965.4)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Linkage Group LG1CM009180.1n/an/a0
Linkage Group LG2CM009181.1n/an/a0
Linkage Group LG3CM009182.1n/an/a0
Linkage Group LG4CM009183.1n/an/a0
Linkage Group LG5CM009184.1n/an/a0
Linkage Group LG6CM009185.1n/an/a0
Linkage Group LG7CM009186.1n/an/a0
Linkage Group LG8CM009187.1n/an/a0
Linkage Group LG9CM009188.1n/an/a0
Linkage Group LG10CM009189.1n/an/a0
Linkage Group LG11CM009190.1n/an/a0
Linkage Group LG12CM009191.1n/an/a0
Linkage Group LG13CM009192.1n/an/a0
Linkage Group LG14CM009193.1n/an/a0
Linkage Group LG15CM009194.1n/an/a0
Linkage Group LG16CM009195.1n/an/a0
Linkage Group LG17CM009196.1n/an/a0
Linkage Group LG18CM009197.1n/an/a0
Linkage Group LG19CM009198.1n/an/a0
Linkage Group LG20CM009199.1n/an/a0
Linkage Group LG22CM009200.1n/an/a0
Linkage Group LG23CM009201.1n/an/a0
unplacedn/an/an/a1,667

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All957,184,0421,689957,119,94232,647,8926410
Linkage Group LG138,662,702138,660,10238,662,702260
Linkage Group LG232,647,892132,645,59232,647,892230
Linkage Group LG337,309,556137,304,15637,309,556540
Linkage Group LG430,507,480130,504,58030,507,480290
Linkage Group LG536,154,892136,152,49236,154,892240
Linkage Group LG639,760,669139,757,56939,760,669310
Linkage Group LG764,889,811164,885,01164,889,811480
Linkage Group LG823,959,896123,957,69623,959,896220
Linkage Group LG921,018,370121,016,37021,018,370200
Linkage Group LG1032,346,187132,342,98732,346,187320
Linkage Group LG1132,434,411132,432,01132,434,411240
Linkage Group LG1234,077,077134,075,17734,077,077190
Linkage Group LG1332,061,881132,059,38132,061,881250
Linkage Group LG1437,855,742137,853,14237,855,742260
Linkage Group LG1534,537,245134,534,04534,537,245320
Linkage Group LG1634,727,877134,724,57734,727,877330
Linkage Group LG1735,766,785135,763,38535,766,785340
Linkage Group LG1829,494,144129,490,94429,494,144320
Linkage Group LG1925,955,740125,953,34025,955,740240
Linkage Group LG2029,774,176129,772,47629,774,176170
Linkage Group LG2234,717,234134,715,13434,717,234210
Linkage Group LG2342,076,657142,072,15742,076,657450
unplaced196,447,6181,667196,447,618211,15400
MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Mitochondrion MT16,589116,58916,58900